Dataset Overview
RBPRPL7
Knock-MethodsiRNA
RBP FamilyRibosomal_L30_N
Biosample NameBT549
Tissue TypeBreast
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceGEO
Profile IDGSE79586
PlatformGPL167891
Pubmed ID28813674

RPL7 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of RPL7
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of RPL7


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr116890639CT0.00095NBPF1-FALSE
chr644222158TA0.00856SLC35B2-FALSE
chr237331116TC0.00286.FALSEAluSx1SINE,Alu
chr187328396AT0.00148SEP15-FALSE
chr439550977TC3.35724E-05UGDH-AS1,SMIM14+,-FALSEAluSzSINE,Alu
chr1120455441AG0.00872NOTCH2-FALSE
chr1160920966CT0.00980ITLN2-FALSE
chr2101623533CT0.00784RPL31+FALSE
chr297020049TC0.00070NCAPH+FALSE
chr3128339057AT0.00535RPN1-FALSE(A)nSINE,Alu
chr543575009TC0.00498NNT-AS1-TRUEAluSq2SINE,Alu
chr165299558CT0.00162JAK1-FALSE
chr1150969257TC0.00400.FALSEAluSq2SINE,Alu
chr3176739663AG5.46505E-07TBL1XR1-FALSE
chr8145159705GA0.00383MAF1+FALSE
chr456236480TA0.00967SRD5A3,SRD5A3-AS1+,-FALSE
chr1201488170AG0.00997.FALSEAluSzSINE,Alu
chr2113494520TC0.00267CKAP2L-FALSEAluSx1SINE,Alu
chr1932005AG0.00110.FALSE
chr193297595GT0.00479RPL5+FALSE
chr634252328TA0.00062.FALSE(T)nSINE,Alu
chr4187509420GA0.00121FAT1-FALSE
chr110521238TC0.00173DFFA-TRUEAluYSINE,Alu
chr19162348TC0.00824.FALSEAluSxSINE,Alu
chr136032276AT0.00012NCDN+FALSE(CA)nSINE,Alu
chr1742876398TC0.00697GJC1-FALSEAluSz6SINE,Alu
chr642856029AG7.18756E-05RPL7L1+TRUEAluSzSINE,Alu
chr7100271437CA0.00026GNB2+FALSE
chr1220231946TC0.00439RNU5F-1,BPNT1+,-FALSEAluSzSINE,Alu
chr517276848CA0.00634BASP1+FALSE(A)nSINE,Alu
chr825272447AT0.00770DOCK5+FALSE
chr1142688599AG0.00860.FALSE
chr1145513017AG0.00037NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr154571374AG0.00916TCEANC2+TRUEAluScSINE,Alu
chr1949472GA9.07885E-12ISG15+FALSE
chr269548320CT7.68354E-05GFPT1-FALSE
chr19160963TC0.00098.FALSEAluJbSINE,Alu
chr132661600CT0.00235TXLNA+FALSE(T)nSINE,Alu
chr133961147TG0.00196ZSCAN20+FALSE
chr11255412CA0.00751CPSF3L-FALSE(GCAGG)nSINE,Alu
chr5180682607AC0.00161CTC-338M12.4+FALSE
chr63021448TC0.00126HTATSF1P2-TRUEAluJr4SINE,Alu
chr4128756737AG8.66859E-06.FALSEAluSxSINE,Alu
chr127992824GA0.00503IFI6-FALSE
chr3128215735GA0.00734GATA2-AS1+FALSE
chr111084103TA0.00968TARDBP+FALSE
chr119586458AG1.61978E-09MRTO4+TRUEAluSzSINE,Alu
chr1298942904AG0.00259TMPO+TRUEAluScSINE,Alu
chr629911284TC0.00019.FALSE
chr1648387215AG0.00864LONP2,MIR5095+TRUEAluJbSINE,Alu
chr830643549GC0.00257PPP2CB-FALSE
chr45743512TC0.00045EVC+FALSE
chr261315734AG0.00396KIAA1841+TRUEAluSgSINE,Alu
chr124086788CT0.00040TCEB3+FALSE
chr1490509564CT0.00552TDP1+FALSE
chr117998CT0.00194WASH7P-FALSE
chr237331201TC0.00291.FALSEAluSx1SINE,Alu
chr167874859TC1.49998E-05SERBP1-TRUEAluSxSINE,Alu
chr1254634284TC0.00247CBX5-TRUEAluJrSINE,Alu
chr1118502767GA0.00624WDR3,SPAG17+,-FALSE(GT)nSINE,Alu
chr123240255GA0.00873EPHB2+FALSE
chr1183155546GA0.00103LAMC2+FALSE
chr1109817245CT2.70011E-05CELSR2+FALSE
chr1669151495TA0.00304HAS3+FALSE(T)nSINE,Alu
chr314986080TC4.44089E-16FGD5-AS1-TRUEFLAM_CSINE,Alu
chr1179829096TC4.38746E-06TOR1AIP2-TRUEAluJrSINE,Alu
chr721941586AC0.00016CDCA7L-FALSE
chr19328120AG0.00128H6PD+TRUEAluJrSINE,Alu
chr237327590TC0.00063.FALSE
chr625986717AG0.00217TRIM38+TRUEAluJbSINE,Alu
chr1168220479AG0.00113.FALSEAluSz6SINE,Alu
chr127175047AG0.00634C1S+FALSE
chr1205320515AG0.00022KLHDC8A-FALSE
chr3101284940TC1.85568E-05TRMT10C+FALSE
chr211728089CT0.00352GREB1+FALSEAluSzSINE,Alu
chr177759578AG0.00404AK5+FALSE
chr174665493GA7.81871E-05FPGT-TNNI3K,FPGT+FALSE
chr119542310TC0.00510LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr110042955AG0.00430NMNAT1+TRUEAluScSINE,Alu
chr2162849312GC0.00840DPP4-FALSE
chr13697486CG0.00110LRRC47-FALSEAluScSINE,Alu
chr110367424GA0.00286KIF1B+FALSEAluSxSINE,Alu
chr112071680AG0.00985MFN2+FALSE
chr1075008815TC5.77576E-09DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr167874697TC0.00163SERBP1-TRUEAluSx3SINE,Alu
chr117287301AG0.00104CROCC+FALSE
chr2035521049GA0.00711TLDC2,SAMHD1+,-FALSE
chr153289686AG0.00222ZYG11B+TRUEAluSzSINE,Alu
chr2206987205TC0.00039.FALSEAluSxSINE,Alu
chr16659505GA0.00196KLHL21-FALSE
chr1656510334TC0.00494OGFOD1+FALSE
chr1145281633CA0.00510NBPF20,NOTCH2NL+FALSE
chr1114443606AG0.00014AP4B1-AS1,AP4B1+,-FALSEAluSpSINE,Alu
chr1017362784AG0.00261ST8SIA6-FALSE
chr145244411CA0.00149RPS8+FALSE
chr315113657TC2.06253E-05RBSN-TRUEAluSz6SINE,Alu
chr299812988AG0.00474MRPL30+TRUEAluJbSINE,Alu
chr110520202TC0.00529.FALSEAluSxSINE,Alu
chr237331560TC0.00040.FALSEAluJbSINE,Alu
chr110517314TC0.00617.FALSEAluJrSINE,Alu
chr131732603AC0.00148SNRNP40-FALSE
chr1183105534TC0.00424LAMC1+FALSE
chr1153782011CT0.00913GATAD2B-FALSE
chr1248539888CA0.00088PFKM+FALSE
chr1143467373TC0.00182.FALSE
chr1109746728AG0.00171KIAA1324+TRUEAluJbSINE,Alu
chr1162557871GC0.00273TMEM179B,TMEM223+,-FALSE
chr170833400CT0.00224HHLA3+FALSELTR7SINE,Alu
chr12121118CT0.00234FAAP20-FALSE
chr119542458TC1.01966E-05LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1138356CA0.00199LOC729737-FALSE
chr1120166681GA0.00879ZNF697-FALSE
chr2197000455TC0.00426STK17B-FALSEAluSzSINE,Alu
chr124086807TC0.00352TCEB3+FALSE(T)nSINE,Alu
chr128826190AG0.00233PHACTR4+TRUEAluJbSINE,Alu
chr11662694TC0.00398SLC35E2-TRUEAluYSINE,Alu
chr5172385223TC0.00796LOC100268168-FALSEAluSpSINE,Alu
chr1161160460TA0.00298ADAMTS4-FALSE(CA)nSINE,Alu
chr3172115590AG0.00355FNDC3B+FALSE
chr197543764CT0.00901DPYD-FALSE
chr191457883CG2.74690E-05APC2+FALSE
chr224225006AG0.00555.FALSEAluSxSINE,Alu
chr1156692052TA0.00369ISG20L2-FALSEAluYSINE,Alu
chr1116237273AG0.00814VANGL1+FALSE
chr133086834TC0.00251ZBTB8OS-TRUEAluYSINE,Alu
chr1419686329GA0.00117DUXAP10+FALSE
chr11252441TC0.00602CPSF3L-TRUEAluJrSINE,Alu
chr2217366674AG0.00889.FALSEAluSzSINE,Alu
chr830536078TC0.00509GSR-FALSEAluJrSINE,Alu
chr344791554TC7.29341E-07KIAA1143-FALSEAluJrSINE,Alu
chr110519912TC5.10285E-06.FALSEAluJrSINE,Alu
chr5167898510CG0.00013WWC1+FALSE
chr119542310TC2.12437E-06LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr5130540369CA0.00126LYRM7+FALSETigger4aSINE,Alu
chr187794771GC0.00989LMO4+FALSE
chr1114227223GA0.00699MAGI3+FALSE
chr1145689533AG0.00618NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr1075008731TC8.90942E-06DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr1101443701AG0.00749SLC30A7+FALSE
chr19643155AG0.00015.FALSEAluSxSINE,Alu
chr825272425CT0.00605DOCK5+FALSE
chr120976075TC0.00351PINK1,PINK1-AS+,-FALSEAluSzSINE,Alu
chr159120961GA0.00383MYSM1-FALSE
chr145975269AG0.00098MMACHC+TRUEAluSg7SINE,Alu
chr237331929TC0.00518.FALSEL1MC4SINE,Alu
chr145987557GC0.00921PRDX1-FALSE
chr398517013TC1.12976E-12DCBLD2-FALSE
chr12990912AC0.00244WNK1+FALSE
chr2102484489AC0.00281MAP4K4+FALSE
chr146077218AG0.00543NASP+TRUEAluSc8SINE,Alu
chr140214261AG0.00879PPIE+TRUEAluSq2SINE,Alu
chr12336210CT0.00206RER1+FALSE
chr398299365TG3.92075E-11CPOX-FALSE
chr133148365GC0.00062SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr1231398555AG0.00401GNPAT+FALSE
chr12336210CT0.00509RER1+FALSE
chr1145291217CT0.00415NBPF20+FALSE
chr2206988452AT0.00669NDUFS1-FALSE
chr349395695AC0.00159GPX1-FALSE
chr1234561498TC2.33971E-05TARBP1-FALSE
chr1145369589TC0.00046NBPF20,NBPF10+FALSEL1MC4SINE,Alu
chr2171699153CG0.00247GAD1+FALSE
chr146032974TC0.00196AKR1A1+FALSE
chr237331627TC0.00044.FALSEAluJbSINE,Alu
chr2128603114TC0.00143.FALSEAluSpSINE,Alu
chr1171501831AG0.00037PRRC2C+FALSE
chr1145369709AG0.00019NBPF20,NBPF10+TRUEL1MC4SINE,Alu
chr16283306TC2.62084E-05ICMT-TRUEAluSx3SINE,Alu
chr124022909TA0.00177RPL11+FALSE
chr3170893070GA0.00071TNIK-FALSE
chr110519973TC0.00745.FALSEAluJrSINE,Alu
chr521883662TG0.00108CDH12-FALSE
chr116889502TC0.00516NBPF1-TRUEL1MC4SINE,Alu
chr110517273TC0.00583.FALSEAluJrSINE,Alu
chr140307166GA0.00026TRIT1-FALSE
chr119543364TC0.00447LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1423300642CA0.00266MRPL52+FALSEMIRbSINE,Alu
chr5180682604AT0.00037CTC-338M12.4+FALSE
chr269689699TC0.00800AAK1-TRUEAluSgSINE,Alu
chr310005392TC8.76084E-06EMC3-FALSEAluSg7SINE,Alu
chr1264842925AG0.00345.FALSEAluSzSINE,Alu
chr5130537710AG0.00899LYRM7+TRUEAluJbSINE,Alu
chr1773940094TC0.00557ACOX1-TRUEAluJbSINE,Alu
chr237331531TC0.00389.FALSEAluJbSINE,Alu
chr224223291AG0.00512UBXN2A+TRUEAluScSINE,Alu
chr1144931330CT0.00066NBPF20,PDE4DIP+,-FALSE
chr5133956668GA0.00419SAR1B-FALSE
chr2206983298TC0.00811.FALSEAluJbSINE,Alu
chr1154554947TG0.00511ADAR-FALSE
chr128824360AG0.00971PHACTR4+TRUEAluSx3SINE,Alu
chr116890607GA0.00869NBPF1-FALSE
chr3182639121AG0.00048ATP11B+FALSE
chr125169634AG0.00531CLIC4+FALSE
chr2224621887TC0.00373AP1S3-FALSEAluScSINE,Alu
chr1932618CG0.00569.FALSE
chr11683565GA7.19943E-05NADK-FALSE
chr140537937AC0.00091CAP1+FALSE(A)nSINE,Alu
chr457326126AG0.00790PAICS+TRUEAluJrSINE,Alu
chr116929148GA0.00037NBPF1-FALSELTR16B2SINE,Alu
chr154493197TC0.00064TMEM59-TRUEAluSz6SINE,Alu
chr16585215CT0.00286NOL9-FALSEFAMSINE,Alu
chr8146016990CT0.00027RPL8-FALSE
chr738765149CT0.00785VPS41-FALSE
chr136067925TC0.00397PSMB2-TRUEAluSzSINE,Alu
chr273301687GA0.00618RAB11FIP5-FALSE
chr190478690AC0.00035ZNF326+FALSE
chr227838058CA0.00063ZNF512+FALSE
chr2113509977CT0.00197CKAP2L-FALSE
chr5125961648AG4.28370E-08PHAX+FALSEAluSz6SINE,Alu
chr1160990878CT9.31086E-06F11R-FALSE
chr1156163906CT0.00130SLC25A44+FALSE
chr128835934AG0.00069SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr110042987AG0.00488NMNAT1+TRUEAluScSINE,Alu
chr1742225547AC0.00240C17orf53+FALSE
chr895805071AG1.12730E-06DPY19L4+TRUEAluYf1SINE,Alu
chr1101444071GA0.00963SLC30A7+FALSEMIR3SINE,Alu
chr115992470GA0.00605.FALSE
chr316301148TC0.00050DPH3-FALSE
chr146077218AG0.00783NASP+TRUEAluSc8SINE,Alu
chr1144931727GA0.00037NBPF20,PDE4DIP+,-FALSE
chr2198572083TA0.00272MARS2+FALSE
chr1175128444CA0.00036KIAA0040-FALSE
chr2134728175AG6.62284E-07IFNAR1+TRUEAluScSINE,Alu
chr12109887765TG0.00091KCTD10-FALSE
chr8145159708AG0.00101MAF1+FALSE
chr633679439AC0.00192UQCC2-FALSE
chr194995236GA0.00803F3-FALSE
chr19160982TC0.00350.FALSEAluJbSINE,Alu
chr317200677TG0.00371TBC1D5-FALSE
chr1148251952CA0.00905NBPF8,NBPF14,NBPF9-FALSE
chr11458255TG0.00438ATAD3A+FALSE
chr19989022AG0.00038LZIC-FALSEL1MB5SINE,Alu
chr439528976CT8.52335E-05UGDH-FALSE
chr127181647GA0.00103ZDHHC18+FALSE
chr14103372465CA0.00600TRAF3+FALSE(AC)nSINE,Alu
chr119542456TC0.00193LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr830536606TC0.00017GSR-TRUEAluSpSINE,Alu
chr123408939TA1.04314E-06KDM1A+FALSE
chr3195961254CT0.00119.FALSE
chr811701343TC0.00280CTSB-TRUEAluSx1SINE,Alu
chr5180663940AG0.00331RACK1-FALSE
chr119578576GA0.00347MRTO4+FALSE
chr1675479891TC9.48885E-06TMEM170A-TRUEAluSg4SINE,Alu
chr738764340TC0.00630VPS41-TRUEAluSpSINE,Alu
chr1921366997AG0.00727ZNF431+TRUEAluScSINE,Alu
chr128920925AG0.00294RAB42+TRUEAluSxSINE,Alu
chr128661656AG0.00026MED18+TRUEAluSgSINE,Alu
chr1194863488CT0.00615ENDOD1+FALSE
chr47762848GA4.98180E-08AFAP1,AFAP1-AS1+,-FALSE
chr299772813AG0.00670LIPT1+TRUEAluSx1SINE,Alu
chr119585771AG0.00029MRTO4+FALSEAluSc8SINE,Alu
chr1346700519CA0.00089LCP1-FALSE
chr439551179TC0.00142UGDH-AS1,SMIM14+,-FALSEAluSzSINE,Alu
chr1181026558GA0.00217MR1+FALSE
chr350150360AG0.00827RBM5+TRUEAluSxSINE,Alu
chr1117532798CG0.00466PTGFRN+FALSE
chr116895634TG0.00472NBPF1-FALSE
chr210923581CT0.00593ATP6V1C2,PDIA6+,-FALSE
chr195362514GT7.06346E-05CNN3-FALSE
chr1610623553TC0.00024EMP2-TRUEAluSpSINE,Alu
chr112040479TC0.00505MFN2+FALSE
chr120826790TC0.00208MUL1-FALSE
chr1120163007GA0.00573ZNF697-FALSE
chr1946053369TC0.00504OPA3-TRUEAluSx1SINE,Alu
chr1144881463CT0.00147NBPF20,PDE4DIP+,-FALSE
chr4129924977CA0.00760SCLT1-FALSE
chr2114356336CT0.00680WASH2P+FALSE
chr1117945049GA0.00120MAN1A2+FALSE
chr12125514120AG0.00232.FALSE(TA)nSINE,Alu
chr101086797AC0.00499IDI2-AS1,IDI1+,-FALSE
chr457327092AG0.00091PAICS+TRUEAluSx1SINE,Alu
chr717384354AG0.00908AHR+TRUEAluSxSINE,Alu
chr1182569318GT0.00101RGS16-FALSE
chr167451522AT0.00883MIER1+FALSE
chr2128620438CA0.00230AMMECR1L-FALSE
chr6160101723TC0.00234SOD2-TRUEAluSzSINE,Alu
chr343098969TG0.00596FAM198A+FALSEL1ME3GSINE,Alu
chr11126147713CG0.00384FOXRED1+FALSE

Differential Expression Gene Analysis