RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	28864731	A	G	0.00477	RCC1	+	FALSE
chr2	37331546	T	C	0.00694		.	FALSE	AluJb	SINE,Alu
chr16	81064533	A	G	0.00686	CENPN	+	TRUE	AluSg	SINE,Alu
chr3	195701388	G	A	0.00274	SDHAP1	-	FALSE
chr1	144481235	A	G	1.18230E-05	NBPF20	+	FALSE
chr1	145512073	A	G	0.00505	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr4	7764131	A	T	5.82585E-11	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	212114666	C	G	0.00858	INTS7	-	FALSE
chr5	130537747	A	G	1.40133E-05	LYRM7	+	TRUE	AluJb	SINE,Alu
chr5	149763305	A	G	0.00640	TCOF1	+	FALSE
chr4	25253995	C	T	9.95051E-10	PI4K2B	+	FALSE
chr1	53289892	A	G	0.00079	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr2	208619320	A	G	0.00339	CCNYL1	+	FALSE	EutTc1-N1	SINE,Alu
chr1	146649884	T	A	0.00338	PDIA3P1	+	FALSE
chr1	6932082	T	A	0.00330	CAMTA1	+	FALSE
chr1	1683565	G	A	0.00269	NADK	-	FALSE
chr2	73957124	A	G	2.00679E-05	TPRKB	-	FALSE
chr9	132268259	A	G	0.00032	LINC00963	+	TRUE	AluJb	SINE,Alu
chr1	10517513	T	C	0.00088		.	FALSE	AluSx1	SINE,Alu
chr1	214524496	T	C	0.00114	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	1717439	T	A	0.00663	GNB1	-	FALSE
chr1	155282600	A	G	0.00019	FDPS	+	TRUE	AluSp	SINE,Alu
chrX	9863112	A	G	0.00498	SHROOM2	+	FALSE
chr2	37327677	T	C	0.00019		.	FALSE
chr14	76680377	T	A	0.00143		.	FALSE	L1M5	SINE,Alu
chr2	3592602	T	C	0.00232	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr2	37330614	T	C	0.00410		.	FALSE	AluSq2	SINE,Alu
chr1	1169973	G	A	0.00783	B3GALT6	+	FALSE
chr12	125511942	A	G	0.00015	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	182569318	G	T	0.00829	RGS16	-	FALSE
chr4	38946481	A	G	0.00168	FAM114A1	+	FALSE	MER1B	SINE,Alu
chr1	179829096	T	C	4.38746E-06	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr2	37329300	T	C	0.00092		.	FALSE	AluJr4	SINE,Alu
chr19	46053316	T	C	4.53847E-05	OPA3	-	TRUE	AluSx1	SINE,Alu
chr2	36704033	T	A	0.00012	CRIM1	+	FALSE
chr1	86815303	T	C	0.00571	ODF2L	-	FALSE
chr1	100489297	G	C	0.00669	SLC35A3	+	FALSE	AluSc	SINE,Alu
chr19	58356540	A	G	0.00019	ZNF587B	+	TRUE	AluSx	SINE,Alu
chr6	52442880	G	T	5.05556E-08	TRAM2-AS1	+	FALSE
chr1	1246978	A	T	0.00760	PUSL1,CPSF3L	+,-	FALSE
chr1	109474776	A	G	0.00149	GPSM2,CLCC1	+,-	FALSE	AluSz	SINE,Alu
chr1	89299658	G	A	0.00779	PKN2	+	FALSE
chr5	81571878	A	T	8.61300E-05	RPS23	-	FALSE
chr1	155161737	G	C	0.00482	MUC1	-	FALSE
chr1	183876182	C	T	0.00494	RGL1	+	FALSE
chr7	99917927	T	C	0.00320	SPDYE3	+	FALSE	AluJb	SINE,Alu
chr1	36067760	T	C	0.00768	PSMB2	-	TRUE	AluSz	SINE,Alu
chr8	95805071	A	G	1.12730E-06	DPY19L4	+	TRUE	AluYf1	SINE,Alu
chr2	220422583	G	A	0.00089	OBSL1	-	FALSE
chr1	115248084	C	T	0.00171	NRAS	-	FALSE
chr2	204298783	A	C	0.00179	RAPH1	-	FALSE	(AT)n	SINE,Alu
chr1	44088547	C	A	0.00018	PTPRF	+	FALSE	A-rich	SINE,Alu
chr1	54493197	T	C	0.00148	TMEM59	-	TRUE	AluSz6	SINE,Alu
chr16	10624905	T	C	1.13117E-09	EMP2	-	FALSE	AluSx3	SINE,Alu
chr1	230416410	G	T	0.00516	GALNT2	+	FALSE
chr1	789187	C	G	5.07459E-05	LINC01128	+	FALSE
chr7	44800040	C	A	0.00565	ZMIZ2	+	FALSE
chr11	6703162	A	T	0.00726	MRPL17	-	FALSE
chr10	61548852	G	A	0.00693	CCDC6	-	FALSE
chr1	204189357	C	T	0.00835	PLEKHA6	-	FALSE
chr1	113672640	A	G	0.00629		.	FALSE	AluJb	SINE,Alu
chr3	119545349	T	C	0.00805	GSK3B	-	FALSE
chr1	9163405	T	C	0.00014		.	FALSE	AluSp	SINE,Alu
chr2	85773689	T	C	0.00104	GGCX	-	TRUE	AluSx1	SINE,Alu
chr4	56298300	G	A	7.51019E-06	CLOCK	-	FALSE
chr4	1066073	T	A	0.00387	RNF212	-	FALSE	L1MC1	SINE,Alu
chr2	20424655	G	A	0.00193	SDC1	-	FALSE
chr1	33066859	A	G	0.00403	ZBTB8A	+	TRUE	AluSq4	SINE,Alu
chr1	27992824	G	A	0.00025	IFI6	-	FALSE
chr1	66058513	A	G	0.00091	LEPR	+	FALSE
chr1	25717365	C	G	0.00229	RHCE	-	FALSE
chr5	75469427	G	A	0.00155	SV2C	+	FALSE
chr1	77759578	A	G	0.00031	AK5	+	FALSE
chr2	69689699	T	C	0.00800	AAK1	-	TRUE	AluSg	SINE,Alu
chr12	27953266	G	T	0.00198	KLHL42	+	FALSE
chrX	16781687	A	G	0.00298		.	FALSE	AluSx1	SINE,Alu
chr17	45219755	G	T	0.00592	CDC27	-	FALSE
chr1	36068237	T	C	0.00075	PSMB2	-	TRUE	AluSc	SINE,Alu
chr3	48787046	T	C	0.00699	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	67874849	T	C	0.00169	SERBP1	-	TRUE	AluSx	SINE,Alu
chr12	98943214	A	G	4.64520E-05	TMPO	+	TRUE	AluSz	SINE,Alu
chr17	65334885	T	C	2.77388E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr5	98128999	G	A	0.00663	RGMB	+	FALSE
chr1	26143726	G	T	0.00128	SEPN1	+	FALSE	AluSx	SINE,Alu
chr4	2516791	T	G	4.75740E-05	RNF4	+	FALSE
chr1	10368092	A	C	0.00945	KIF1B	+	FALSE
chr20	62572487	A	C	0.00390	UCKL1	-	FALSE
chr1	1251841	T	C	0.00915	CPSF3L	-	TRUE	AluSq2	SINE,Alu
chr17	49042289	G	T	0.00737	SPAG9	-	FALSE	AluJb	SINE,Alu
chr1	35648840	G	T	0.00543	SFPQ	-	FALSE	AluSx3	SINE,Alu
chr2	39664278	C	A	0.00053	MAP4K3	-	FALSE	(CGC)n	SINE,Alu
chr16	48388258	A	G	8.02686E-05	MIR5095	+	TRUE	AluSz	SINE,Alu
chr15	33064465	C	G	0.00735	FMN1	-	FALSE
chr1	90470915	T	A	9.94810E-07	ZNF326	+	FALSE
chr2	32535692	A	G	0.00236		.	FALSE	AluJb	SINE,Alu
chr6	109001952	A	G	0.00978	FOXO3	+	FALSE	(A)n	SINE,Alu
chr3	15113681	T	C	0.00048	RBSN	-	TRUE	AluSz6	SINE,Alu
chr4	39550967	T	C	2.19217E-06	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr5	53841241	T	A	0.00179	SNX18	+	FALSE
chr1	201845881	A	C	0.00032	IPO9	+	FALSE
chr1	87573963	T	C	0.00787	HS2ST1	+	FALSE
chr1	156005447	C	A	0.00337	UBQLN4	-	FALSE
chr1	144598641	C	T	0.00250	NBPF20	+	FALSE
chrX	123046741	A	G	0.00169	XIAP	+	TRUE	AluSz	SINE,Alu
chr2	100899665	G	A	0.00758	LONRF2	-	FALSE
chr1	6583383	T	C	0.00305	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	36067752	T	C	0.00402	PSMB2	-	TRUE	AluSz	SINE,Alu
chr4	2940462	T	C	6.45116E-07	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	19586455	A	G	0.00772	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	230974329	A	G	0.00355	C1orf198	-	FALSE
chr2	176791183	T	C	0.00252	LNPK	-	TRUE	MSTD	SINE,Alu
chr4	57326291	A	G	0.00424	PAICS	+	TRUE	AluJr	SINE,Alu
chrX	2824933	T	C	0.00066	ARSD	-	TRUE	AluSx1	SINE,Alu
chr1	214524178	T	C	0.00265	PTPN14	-	TRUE	AluSx	SINE,Alu
chr7	65618870	A	G	0.00097	CRCP	+	TRUE	AluSx3	SINE,Alu
chr3	179117280	T	C	0.00624	GNB4	-	TRUE	AluSz	SINE,Alu
chr12	98943192	A	G	0.00011	TMPO	+	FALSE	AluSz	SINE,Alu
chr2	202028727	A	G	0.00833	CFLAR	+	TRUE	AluSx1	SINE,Alu
chr1	28826118	A	G	0.00948	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	569991	T	G	0.00980		.	FALSE
chr9	68413593	C	A	0.00342		.	FALSE
chr3	195694448	C	T	0.00025	SDHAP1	-	FALSE
chr1	145284883	A	G	0.00329	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr1	67874859	T	C	0.00071	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	100489619	A	G	0.00319	SLC35A3	+	TRUE
chr1	145689568	A	G	8.25649E-05	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	16932809	C	T	0.00887	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	70696606	C	A	0.00362	SRSF11	+	FALSE
chr1	90049040	A	G	0.00190	LRRC8B	+	FALSE
chr8	143763622	C	T	0.00470	PSCA	+	FALSE
chr1	19586519	A	G	0.00310	MRTO4	+	TRUE	AluSz	SINE,Alu
chr5	118174745	T	C	0.00084	DTWD2	-	TRUE	AluY	SINE,Alu
chrX	123046779	A	G	0.00629	XIAP	+	TRUE	AluSz	SINE,Alu
chr7	22983890	T	C	0.00097	FAM126A	-	FALSE
chr4	190881971	A	C	0.00183	FRG1	+	FALSE
chr1	51822219	G	A	0.00283	EPS15	-	FALSE
chr1	52817432	T	C	0.00518	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr1	204526554	A	G	0.00194	MDM4	+	TRUE	AluSx	SINE,Alu
chr17	79838088	T	C	6.81311E-05		.	FALSE	AluSx	SINE,Alu
chr1	65900357	G	T	0.00851	LEPR,LEPROT	+	FALSE
chr19	3465142	T	C	0.00100	NFIC	+	FALSE
chr1	43897496	G	A	0.00481	SZT2	+	FALSE
chr1	231468953	G	A	0.00085	EXOC8	-	FALSE
chr4	2517223	A	G	2.74855E-08	RNF4	+	FALSE
chr1	179852074	T	C	0.00309	TOR1AIP1	+	FALSE
chr1	117531621	A	G	0.00577	PTGFRN	+	FALSE
chr3	45721874	A	G	0.00314	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	10093457	C	T	0.00777	UBE4B	+	FALSE
chr1	38155698	G	T	0.00368	C1orf109	-	FALSE	AluSx1	SINE,Alu
chr1	93826775	T	C	0.00172	DR1	+	FALSE
chr2	55255314	A	C	0.00638	RTN4	-	FALSE
chr1	16890320	T	C	0.00045	NBPF1	-	FALSE
chr1	6681836	G	A	5.48259E-05	PHF13	+	FALSE
chr3	14986098	T	C	0.00996	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	10520378	T	C	0.00047		.	FALSE	AluSx1	SINE,Alu
chr4	110971055	A	T	0.00048	ELOVL6	-	FALSE
chr1	53289686	A	G	0.00460	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr5	128430757	T	C	0.00338	ISOC1	+	FALSE
chr1	16890639	C	T	5.60894E-05	NBPF1	-	FALSE
chr1	9328255	A	G	0.00729	H6PD	+	TRUE	AluJr	SINE,Alu
chr6	26368938	C	T	0.00121	BTN3A2	+	FALSE
chr3	191097966	T	C	1.34670E-13	CCDC50	+	FALSE
chr1	148003756	T	C	0.00162	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr2	72403405	A	C	0.00227	EXOC6B	-	FALSE	GA-rich	SINE,Alu
chr3	73115126	A	T	0.00228	PPP4R2	+	FALSE
chr2	20648946	C	T	0.00531	RHOB	+	FALSE
chr1	204525548	A	G	0.00027	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	229762054	T	A	0.00535	URB2	+	FALSE
chr2	99812464	A	G	1.88485E-05	MRPL30	+	TRUE	AluSx	SINE,Alu
chr2	85548639	A	G	0.00687	TGOLN2	-	FALSE
chr1	1252513	T	C	0.00013	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr2	196602326	T	G	0.00503	SLC39A10	+	FALSE
chr1	113001409	C	T	2.24539E-06	CTTNBP2NL	+	FALSE	AluJr	SINE,Alu
chr5	81571669	C	T	0.00143	RPS23	-	FALSE
chr19	18476176	A	G	0.00452	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr19	46214293	C	T	0.00137	FBXO46	-	FALSE
chr5	149829068	C	T	0.00038	RPS14	-	FALSE
chr4	7764501	T	A	5.61153E-09	AFAP1,AFAP1-AS1	+,-	FALSE
chr11	65404866	T	G	0.00664	PCNX3	+	FALSE	(T)n	SINE,Alu
chr3	155660873	A	G	0.00018		.	FALSE	AluSz	SINE,Alu
chr3	107773064	T	C	0.00421	CD47	-	TRUE	FLAM_A	SINE,Alu
chr1	33148706	A	G	0.00087	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	220231254	T	C	0.00376	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	45244419	T	A	0.00027		.	FALSE
chr1	26802401	T	G	4.43852E-05	HMGN2	+	FALSE
chr1	168220341	A	G	0.00179		.	FALSE	AluSz6	SINE,Alu
chr1	28608338	A	G	0.00341	SESN2	+	FALSE
chr1	2520435	G	C	0.00041	FAM213B	+	FALSE
chr1	24798520	A	C	0.00110	NIPAL3	+	FALSE
chr1	6582498	T	C	0.00403	NOL9	-	TRUE	AluSx1	SINE,Alu
chr17	49042386	T	C	4.28426E-05	SPAG9	-	TRUE	AluJb	SINE,Alu
chr1	10042988	A	G	3.32241E-06	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	1684347	C	T	0.00550	NADK	-	FALSE
chr6	74133913	T	C	0.00439		.	FALSE	AluY	SINE,Alu
chr1	145511968	A	G	0.00411	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	87573331	T	C	0.00699	HS2ST1	+	FALSE	(AT)n	SINE,Alu
chr17	7482018	C	A	9.29146E-05	SENP3-EIF4A1,EIF4A1	+	FALSE
chr4	154257510	A	C	0.00121	TRIM2	+	FALSE	(A)n	SINE,Alu
chr1	16919961	C	T	0.00133	NBPF1	-	FALSE
chr19	3053116	G	C	0.00276	AES	-	FALSE
chr1	46164493	T	C	0.00325	IPP	-	TRUE	AluJb	SINE,Alu
chr3	44790772	T	C	0.00024	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	26608018	G	A	2.25777E-05		.	FALSE
chr4	17802819	T	C	0.00316	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	160967856	T	C	0.00116	F11R	-	TRUE	AluSp	SINE,Alu

RBP	SRSF1
Knock-Method	siRNA
RBP Family	RRM_1
Biosample Name	Foreskin keratinocytes
Tissue Type	Foreskin
Biosample Type	Cell line
# of Control	3
# of Treat	3
Species	Human
Data Source	GEO
Profile ID	GSE114529
Platform	GPL18573
Pubmed ID	30380419

SRSF1 - Target Gene Network