RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	203766872	G	A	1.42518E-06	ZC3H11A,ZBED6	+	FALSE
chr1	144823139	G	A	0.00941	NBPF20,NBPF9	+	FALSE
chr3	33481400	G	C	1.12603E-05	UBP1	-	FALSE
chr1	32697110	A	T	5.19592E-06	EIF3I	+	FALSE	AluSp	SINE,Alu
chr1	33148367	C	G	0.00020	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	204520000	A	G	0.00032	MDM4	+	TRUE	Charlie2a	SINE,Alu
chr1	65692499	C	T	0.00930	AK4	+	FALSE	(T)n	SINE,Alu
chr1	21793644	G	A	0.00698	NBPF3	+	FALSE
chr5	6372180	C	T	0.00034	MED10	-	FALSE
chr1	10519936	T	C	0.00607		.	FALSE	AluJr	SINE,Alu
chr3	45126558	C	T	0.00000	CDCP1	-	FALSE
chr17	5288079	A	C	0.00085	RABEP1	+	FALSE
chr3	184429155	A	T	0.00056	MAGEF1	-	FALSE
chr1	56961756	A	G	0.00263	PLPP3	-	FALSE
chr6	96054540	G	T	0.00358	MANEA	+	FALSE
chr9	127711532	T	C	0.00018	SCAI	-	TRUE	AluSp	SINE,Alu
chr7	44917405	C	T	0.00024	PURB	-	FALSE	AluSz	SINE,Alu
chr5	149829071	T	C	0.00360	RPS14	-	FALSE
chr1	145273431	A	G	0.00203	NBPF20,NOTCH2NL	+	FALSE
chr1	9160982	T	C	0.00304		.	FALSE	AluJb	SINE,Alu
chr14	67852040	A	G	4.57409E-05	EIF2S1	+	TRUE	AluJb	SINE,Alu
chr6	13788297	T	C	0.00077	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	145693958	A	G	3.55543E-06	NBPF20,NBPF10	+	TRUE	AluSz	SINE,Alu
chr1	117529752	C	A	0.00024	PTGFRN	+	FALSE
chr1	227071525	C	T	0.00085	PSEN2	+	FALSE
chr16	68962	C	T	0.00852		.	FALSE
chr4	190864378	T	G	0.00247	FRG1	+	FALSE	GA-rich	SINE,Alu
chr1	70904800	G	T	0.00678	CTH	+	FALSE
chr5	9546451	G	A	0.00030	SNHG18	+	FALSE
chr5	139876355	G	A	0.00815	ANKHD1,ANKHD1-EIF4EBP3	+	FALSE	GA-rich	SINE,Alu
chr1	10517952	C	A	0.00341		.	FALSE
chr1	10518052	T	C	0.00831		.	FALSE	AluJr	SINE,Alu
chr1	109239334	A	T	0.00035	PRPF38B	+	FALSE
chr1	35658260	C	G	0.00477	SFPQ	-	FALSE
chr1	36067752	T	C	5.48772E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	53684924	A	G	0.00913	C1orf123	-	FALSE	L1MA5A	SINE,Alu
chr4	57194712	A	C	0.00399	KIAA1211	+	FALSE
chr1	11347152	A	T	0.00295	UBIAD1	+	FALSE
chr1	205739266	C	T	0.00125	RAB29	-	FALSE
chr1	33145958	G	T	0.00080	SYNC,RBBP4	+,-	FALSE	(T)n	SINE,Alu
chr1	100489992	A	G	0.00297	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr6	150047423	T	C	0.00688	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	146643580	G	A	0.00113	PRKAB2	-	FALSE
chr1	226171340	T	C	0.00462	SDE2	-	TRUE	BC200	SINE,Alu
chr1	23636273	A	T	0.00442	HNRNPR	-	FALSE
chr1	79109353	G	T	0.00214	IFI44L	+	FALSE	LTR26	SINE,Alu
chr1	145283733	A	G	0.00458	NBPF20,NOTCH2NL	+	FALSE
chr5	37291446	T	C	6.87884E-05		.	FALSE	AluSx3	SINE,Alu
chr4	155457052	T	A	0.00833	PLRG1	-	FALSE	L2d2	SINE,Alu
chr1	39989926	T	C	0.00354	BMP8A,PPIEL	+,-	FALSE
chr4	39550715	T	C	0.00995	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr1	79109337	G	T	0.00790	IFI44L	+	FALSE	LTR26	SINE,Alu
chr1	28662157	A	G	0.00159	MED18	+	TRUE	AluSq2	SINE,Alu
chr7	6694922	G	C	0.00996	ZNF316	+	FALSE
chr2	86947783	C	T	0.00515	RNF103-CHMP3,RMND5A	+,-	FALSE
chr1	40537924	G	A	0.00245	CAP1	+	FALSE	(A)n	SINE,Alu
chr12	98943182	A	G	1.41026E-08	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	210006603	C	T	0.00829	DIEXF	+	FALSE
chr1	38327586	C	T	0.00198	INPP5B	-	FALSE	AluSx3	SINE,Alu
chr6	38670804	G	C	0.00400	GLO1	-	FALSE
chr1	226259443	C	A	0.00927	H3F3AP4,H3F3A	+	FALSE
chr21	40195059	A	G	0.00817	ETS2	+	FALSE
chr1	87328433	T	C	3.09926E-06	SEP15	-	FALSE
chr17	76799795	G	A	0.00363	USP36	-	FALSE
chr2	98388811	C	G	0.00123	TMEM131	-	FALSE
chr1	10521238	T	C	0.00096	DFFA	-	TRUE	AluY	SINE,Alu
chr2	38971644	T	G	0.00239	SRSF7	-	FALSE
chr1	23636275	G	T	0.00185	HNRNPR	-	FALSE
chr1	35817022	T	A	0.00072	ZMYM4	+	FALSE
chr1	11782935	A	G	0.00067		.	FALSE	AluSx	SINE,Alu
chr17	58156064	G	A	9.79781E-05	HEATR6	-	FALSE
chr4	17804847	T	C	0.00512	DCAF16	-	TRUE	AluSx	SINE,Alu
chr8	25272447	A	T	0.00770	DOCK5	+	FALSE
chr2	174773510	T	A	0.00775	SP3	-	FALSE	A-rich	SINE,Alu
chr1	91486838	G	C	0.00370	ZNF644	-	FALSE
chr12	133298349	A	G	0.00000	PGAM5	+	TRUE	AluSp	SINE,Alu
chr6	74134673	T	C	0.00340		.	FALSE	AluSz	SINE,Alu
chr1	19578576	G	A	0.00347	MRTO4	+	FALSE
chr1	16576291	A	G	0.00842	FBXO42	-	FALSE	A-rich	SINE,Alu
chr1	211921422	T	G	0.00686	LPGAT1	-	FALSE
chr4	177249593	T	G	0.00038	SPCS3	+	FALSE	(T)n	SINE,Alu
chr1	145116027	T	C	1.71852E-07	NBPF20,SEC22B	+	FALSE
chr2	72403402	C	A	0.00108	EXOC6B	-	FALSE	GA-rich	SINE,Alu
chr6	42856937	A	G	0.00122	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr4	16258050	C	T	0.00617	TAPT1-AS1	+	FALSE
chr2	24224000	A	G	0.00464		.	FALSE	AluSp	SINE,Alu
chr1	158631171	A	C	0.00815	SPTA1	-	FALSE
chr2	203744240	T	C	0.00595		.	FALSE	AluSx	SINE,Alu
chr1	24935337	A	G	0.00773	NCMAP	+	TRUE	AluJb	SINE,Alu
chr1	110951224	A	G	0.00352	LAMTOR5-AS1	+	TRUE	AluJr	SINE,Alu
chr17	49041732	T	C	0.00135	SPAG9	-	TRUE	AluSx	SINE,Alu
chr1	9163096	T	C	0.00185		.	FALSE	FRAM	SINE,Alu
chr1	144922523	C	T	0.00566	NBPF20,PDE4DIP	+,-	FALSE
chr8	12879707	T	G	0.00780	KIAA1456	+	FALSE
chr14	62262587	T	C	0.00153	SNAPC1	+	FALSE	FLAM_C	SINE,Alu
chr1	1595603	C	G	0.00017	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr1	38275802	T	C	2.04657E-06	MTF1	-	FALSE
chr1	1573181	C	A	0.00038	CDK11B	-	FALSE
chr1	36067817	T	C	1.59583E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	159946779	G	A	0.00019	LINC01133	+	FALSE	(GAAA)n	SINE,Alu
chr1	145688664	A	T	0.00087	NBPF20,NBPF10,RNF115	+	FALSE
chr1	46076642	A	G	0.00552	NASP	+	TRUE	AluSx	SINE,Alu
chr2	127826533	A	G	0.00104	BIN1	-	FALSE
chr1	76255228	G	A	0.00073	RABGGTB,SNORD45B	+	FALSE
chr19	39433142	T	A	0.00215	FBXO17	-	FALSE	AluJb	SINE,Alu
chr1	205577901	G	A	0.00904	ELK4	-	FALSE
chr18	19445881	T	A	0.00224	MIB1	+	FALSE
chr1	65297860	A	T	0.00847	RAVER2	+	FALSE
chr19	2917287	C	A	0.00243	ZNF57	+	FALSE
chr1	19585554	A	G	2.15626E-06	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr2	37328042	T	C	6.80414E-06		.	FALSE
chrX	77084042	T	C	0.00703	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	153643449	G	C	0.00704	ILF2	-	FALSE
chr1	229736656	G	C	0.00793	TAF5L	-	FALSE
chr10	129910475	T	G	0.00061	MKI67	-	FALSE
chr2	132481480	T	C	0.00989	C2orf27A	+	FALSE
chr1	1636355	A	G	0.00857	CDK11B,CDK11A	-	FALSE
chr1	207247478	C	T	0.00995	PFKFB2	+	FALSE	MER5B	SINE,Alu
chr12	7052982	T	G	0.00199	C12orf57	+	FALSE	U7	SINE,Alu
chr1	32687475	T	C	0.00785	TMEM234,EIF3I	+,-	FALSE
chr2	229890660	A	G	0.00596	PID1	-	FALSE
chr6	41888827	C	G	0.00936	MED20	-	FALSE
chr1	145513112	A	G	0.00080	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	53291435	A	G	0.00049	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	16576295	G	A	0.00139	FBXO42	-	FALSE	A-rich	SINE,Alu
chr1	23636028	T	A	0.00029	HNRNPR	-	FALSE
chr19	811933	C	T	0.00026	PTBP1	+	FALSE
chr7	6063283	C	T	0.00032	AIMP2,EIF2AK1	+,-	FALSE
chr1	24128467	C	T	0.00086	HMGCL	-	FALSE
chr6	34213986	T	A	0.00262	HMGA1	+	FALSE
chr1	16889642	T	C	0.00480	NBPF1	-	TRUE
chr1	85787118	G	C	0.00104	DDAH1	-	FALSE
chr2	45640374	C	A	0.00578	SRBD1	-	FALSE
chr1	19545145	A	T	0.00510	LOC101927895,EMC1	+,-	FALSE
chr1	109746825	A	G	0.00094	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr2	218696215	A	G	0.00915	TNS1	-	FALSE
chr2	224622242	T	C	0.00873	AP1S3	-	TRUE	AluSx1	SINE,Alu
chr1	3371371	C	G	0.00844	ARHGEF16	+	FALSE
chr1	115110683	A	C	0.00168	BCAS2	-	FALSE
chr4	53364	G	A	0.00714	ZNF718,ZNF595	+	FALSE
chr3	14986104	T	C	0.00992	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	10521254	T	C	0.00522	DFFA	-	TRUE	AluY	SINE,Alu
chr17	421931	T	C	0.00260	VPS53	-	TRUE	AluSx	SINE,Alu
chr16	2882267	G	C	0.00252	ZG16B	+	FALSE
chr1	33148623	A	G	4.79591E-07	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr6	71298639	A	G	0.00339		.	FALSE	AluSp	SINE,Alu
chr1	33149486	A	G	5.00374E-05	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr5	60050122	A	T	0.00272	ELOVL7	-	FALSE
chr2	85548639	A	G	0.00687	TGOLN2	-	FALSE
chr12	42719890	A	G	0.00730	ZCRB1	-	FALSE
chr2	236957822	G	A	0.00929	AGAP1	+	FALSE
chr19	9672981	T	C	0.00041		.	FALSE	AluSx3	SINE,Alu
chr19	65489	C	A	0.00494	WASH5P	-	FALSE	L2b	SINE,Alu
chr1	240255561	G	A	0.00224	FMN2	+	FALSE	(GGC)n	SINE,Alu
chr1	144932220	G	T	0.00449	NBPF20,PDE4DIP	+,-	FALSE
chr2	69548320	C	T	7.68354E-05	GFPT1	-	FALSE
chr1	46075612	A	G	0.00153	NASP	+	TRUE	AluSx4	SINE,Alu
chr3	44790781	T	C	0.00887	KIAA1143	-	TRUE	AluY	SINE,Alu
chr2	113334241	A	G	0.00388	POLR1B	+	TRUE
chr2	99812464	A	G	1.88485E-05	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	36024788	C	T	5.60663E-14	NCDN	+	FALSE
chr7	75677504	C	T	0.00768	MDH2	+	FALSE
chr2	206987635	T	C	0.00930		.	FALSE	AluJb	SINE,Alu
chr1	145509570	A	G	0.00043	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr1	32697085	T	C	0.00366	EIF3I	+	FALSE	AluSp	SINE,Alu
chr7	26708303	G	T	0.00095	SKAP2	-	FALSE	AluSx3	SINE,Alu
chr2	11323106	G	T	0.00860	ROCK2	-	FALSE	(TA)n	SINE,Alu
chr1	28920944	A	G	0.00446	RAB42	+	TRUE	AluSx	SINE,Alu
chr15	41593269	A	G	0.00196		.	FALSE	AluSz6	SINE,Alu
chr15	31619607	G	A	0.00887	KLF13	+	FALSE
chr22	29904354	G	A	0.00072	THOC5	-	FALSE
chr3	196659892	T	G	0.00620	SENP5	+	FALSE	AluSz	SINE,Alu
chr19	53914819	A	G	5.13713E-06	ZNF765	+	TRUE	AluSp	SINE,Alu
chr1	144931392	G	A	0.00172	NBPF20,PDE4DIP	+,-	FALSE
chr3	194789663	T	C	0.00754	XXYLT1	-	FALSE	MARNA	SINE,Alu
chr14	90509582	T	C	0.00017	TDP1	+	FALSE
chr19	9673107	T	C	1.71894E-07		.	FALSE	AluSx3	SINE,Alu
chr1	212534448	T	C	0.00926	PPP2R5A	+	FALSE
chr6	159396143	T	C	0.00185		.	FALSE	AluSc	SINE,Alu
chr2	37331560	T	C	0.00040		.	FALSE	AluJb	SINE,Alu
chr1	148561089	T	C	0.00010	NBPF15	+	FALSE
chr3	124950421	T	A	0.00713	ZNF148	-	FALSE
chr4	17629921	A	G	0.00454		.	FALSE	MER90	SINE,Alu
chr1	10519982	T	C	0.00417		.	FALSE	AluJr	SINE,Alu
chr4	17629434	A	G	0.00661		.	FALSE	AluSx3	SINE,Alu
chr7	6501830	G	A	0.00217	KDELR2	-	FALSE
chr1	40361783	G	C	0.00023	MYCL	-	FALSE
chr1	214813487	A	G	0.00027	CENPF	+	FALSE
chr1	26774224	A	G	0.00349	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr3	15113716	T	C	2.87067E-10	RBSN	-	TRUE	AluSz6	SINE,Alu
chr6	134492482	A	C	0.00108	SGK1	-	FALSE
chr10	114209912	A	G	0.00060	VTI1A	+	TRUE	AluSx3	SINE,Alu
chr1	2323041	T	C	0.00970	MORN1	-	FALSE
chr1	46828653	T	A	0.00920	NSUN4	+	FALSE
chr1	65298791	A	T	0.00242	RAVER2	+	FALSE
chr6	42047426	A	G	0.00676	TAF8	+	TRUE	AluSz6	SINE,Alu
chr1	213069783	A	G	0.00600	FLVCR1	+	FALSE
chr3	141668922	T	C	0.00937	TFDP2	-	TRUE	AluSz	SINE,Alu
chr12	125267857	T	C	0.00702	SCARB1	-	TRUE	FRAM	SINE,Alu
chr1	35650014	C	A	0.00012	SFPQ	-	FALSE
chr1	10518921	C	T	0.00398		.	FALSE	AluSx3	SINE,Alu
chr2	47129284	A	G	0.00327	MCFD2	-	FALSE
chr2	63817855	C	G	0.00096	MDH1	+	FALSE
chr1	1597356	G	C	0.00995	CDK11B,SLC35E2B	-	FALSE
chr5	176883676	A	T	0.00456	DBN1	-	FALSE	(A)n	SINE,Alu
chr1	145284134	G	C	0.00203	NBPF20,NOTCH2NL	+	FALSE	(TG)n	SINE,Alu
chr4	119555142	A	G	4.95460E-05	LOC729218	+	FALSE
chr2	190636411	C	G	0.00870	ORMDL1	-	FALSE
chr20	46284868	A	T	0.00681	NCOA3	+	FALSE
chr16	48386442	A	G	0.00824	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr1	32373837	G	T	0.00068	PTP4A2	-	FALSE	(T)n	SINE,Alu
chr15	41590973	A	G	1.61675E-06	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr15	90375419	T	C	0.00521	C15orf38-AP3S2,AP3S2	-	TRUE	AluJr	SINE,Alu
chr14	74526952	T	C	0.00019	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr19	3053116	G	C	0.00276	AES	-	FALSE
chr1	168218574	A	G	0.00898		.	FALSE	AluSz	SINE,Alu
chr12	56345408	T	G	0.00885	DGKA	+	FALSE
chr3	98518155	A	T	0.00777	DCBLD2	-	FALSE
chr2	91843471	C	T	0.00095	LOC654342	-	FALSE
chr2	24227417	A	G	0.00831		.	FALSE	AluSc	SINE,Alu
chr4	247533	A	G	0.00972	ZNF876P	+	FALSE
chr5	56177846	G	C	0.00952	MAP3K1	+	FALSE
chr1	9331227	A	G	0.00181	H6PD	+	TRUE	AluSx	SINE,Alu
chr7	129472357	A	G	0.00287	UBE2H	-	FALSE
chr2	55452458	G	T	0.00113	CLHC1	-	FALSE

RBP	TRIM25
Knock-Method	siRNA
RBP Family	Non-canonical_RBP
Biosample Name	MDA-231-D
Tissue Type	Breast
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	GEO
Profile ID	GSE79586
Platform	GPL167891
Pubmed ID	28813674

TRIM25 - Target Gene Network