Dataset Overview
RBPTUT3
Knock-MethodsiRNA
RBP FamilyPAP_assoc
Biosample NameHela
Tissue TypeCervix
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceGEO
Profile IDGSE115529
PlatformGPL16791
Pubmed ID30026317

TUT3 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of TUT3
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of TUT3


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr190401416TC6.95799E-05LRRC8D+FALSE
chr272403405AC0.00227EXOC6B-FALSEGA-richSINE,Alu
chr4128757415AG0.00367.FALSEAluYSINE,Alu
chr344791343TC0.00220KIAA1143-FALSEAluJrSINE,Alu
chr126608008TA0.00496SH3BGRL3+FALSE
chr2102508655GT0.00817MAP4K4+FALSE
chr116890428TA0.00233NBPF1-FALSE
chr386991598GT0.00179VGLL3-FALSE
chr119238562GA3.36880E-06IFFO2-FALSE
chr1156256064CT0.00619SMG5,TMEM79+,-FALSE
chr13107196415CT0.00285ARGLU1-FALSE(TTG)nSINE,Alu
chr7116339672CT0.00876MET+FALSE
chr5175816759TA0.00018.FALSE
chr1542503335TC0.00023TMEM87A-FALSE(T)nSINE,Alu
chrX77083941TC0.00271MAGT1-TRUEAluSzSINE,Alu
chr719736460AG6.53378E-05TWISTNB-FALSEMER33SINE,Alu
chr919373160AG0.00404DENND4C+FALSEMADE1SINE,Alu
chr1225360463AT0.00118KRAS-FALSE
chr116577794CT0.00805FBXO42-FALSE
chr128939803CT1.27013E-09TAF12-FALSE
chr1919792403AG1.20818E-05ZNF101+TRUEAluJbSINE,Alu
chr1475202856AG3.12821E-09FCF1+TRUEAluSxSINE,Alu
chr19643106AG0.00088.FALSEAluSxSINE,Alu
chr29661424GC0.00130ADAM17-FALSE
chr1184661773GT0.00082EDEM3-FALSE
chr146159823TA0.00461TMEM69+FALSE
chr1160967855TC0.00050F11R-TRUEAluSpSINE,Alu
chr1202848587GA2.63176E-05RABIF-FALSE
chr116892274AT0.00371NBPF1-FALSE
chr1212910930GA2.01027E-05NSL1-FALSE
chr299812450AG7.07141E-05MRPL30+TRUEAluSxSINE,Alu
chr3183900680GC0.00294AP2M1+FALSEMIR3SINE,Alu
chr1179042719AG2.68049E-06FAM20B+TRUEAluSx1SINE,Alu
chr5149823794GT0.00204RPS14-FALSE
chr159004766GT0.00213OMA1-FALSE
chr1495555551CT0.00404DICER1-FALSE
chr2054963816TC0.00750AURKA-TRUEAluSq10SINE,Alu
chr110520154TC0.00380.FALSEAluSxSINE,Alu
chr16282383TC0.00130ICMT-TRUEAluSzSINE,Alu
chr2242173247GA0.00345HDLBP-FALSE
chr1214638296GA3.68085E-08PTPN14-FALSE
chr193826775TC0.00172DR1+FALSE
chr1179044180AG0.00416FAM20B+TRUEAluSxSINE,Alu
chr291843429GA0.00037LOC654342-FALSE
chr1207219603TC0.00341YOD1-FALSE
chr1674656352TC0.00187RFWD3-TRUEAluJbSINE,Alu
chr5175816760TA0.00016.FALSE
chr1201488143AG0.00492.FALSEAluSzSINE,Alu
chr11126147697GA0.00237FOXRED1+FALSE
chr1179044181AG1.64117E-06FAM20B+TRUEAluSxSINE,Alu
chr264860431TG0.00213SERTAD2-FALSE
chr1109240642AC0.00373PRPF38B+FALSE
chr117287301AG0.00104CROCC+FALSE
chr1203767822TG0.00064ZC3H11A,ZBED6+FALSE
chr1120611964GC0.00077NOTCH2-FALSE
chr112058869CT0.00027MFN2+FALSE
chr4170017406AT0.00534SH3RF1-FALSE
chr297494866CT0.00069CNNM3+FALSE
chr1262928633GA0.00307MON2+FALSE
chr11251841TC0.00915CPSF3L-TRUEAluSq2SINE,Alu
chr1563111739TC0.00914TLN2+FALSE
chr19788153GA0.00198PIK3CD+FALSEAluSxSINE,Alu
chr1114940230TG0.00413TRIM33-FALSE(T)nSINE,Alu
chr3195242996CA0.00136PPP1R2-FALSE
chr239010088AG0.00192.FALSEAluSpSINE,Alu
chr337317605AG9.02711E-05GOLGA4+FALSE
chr146828657CT0.00378NSUN4+FALSE
chr1950370106TG0.00359PNKP-FALSE
chr121544447GA0.00115ECE1-FALSE
chr132799435AT0.00515MARCKSL1-FALSE
chr12123346997GC0.00275HIP1R+FALSE
chr128218100TC0.00080RPA2-FALSE
chr1120612154CG0.00803NOTCH2-FALSE
chr1100316589AG0.00147AGL+FALSE
chr1327407AG0.00752.FALSE
chr386993604GT0.00253VGLL3-FALSEAluJoSINE,Alu
chr175288084TA0.00232RABEP1+FALSE
chr9132266648AG0.00230LINC00963+TRUEAluSxSINE,Alu
chr2179368982AC0.00530MIR548N,PLEKHA3+FALSE
chr1145689566AG0.00918NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr1203277245GA0.00115BTG2+FALSE
chr1656510331GT0.00181OGFOD1+FALSE
chr4248840AG0.00655ZNF876P+TRUEAluYk3SINE,Alu
chr675797290TA0.00147COL12A1-FALSE
chr1154989595TC0.00264ZBTB7B+FALSE
chr1475202734AG0.00016FCF1+TRUEAluScSINE,Alu
chr110520154TC0.00018.FALSEAluSxSINE,Alu
chr116907328GT0.00973NBPF1-FALSE
chr744618448AG0.00962TMED4-FALSEAluSq2SINE,Alu
chr642856156AG0.00190RPL7L1+TRUEAluSzSINE,Alu
chr118708789AG0.00237RPL27A+TRUEAluSpSINE,Alu
chr1117945049GA0.00030MAN1A2+FALSE
chr199673275TC0.00081.FALSETigger1SINE,Alu
chr642849746AG0.00042RPL7L1+TRUEAluSzSINE,Alu
chr2218572597AG0.00322PEX26+TRUEAluYf1SINE,Alu
chr194351064AT0.00212GCLM-FALSE
chr357913810GA0.00477SLMAP+FALSE
chr231611143CT0.00117XDH-FALSE
chr261278017AG8.96590E-05PEX13+TRUEAluYSINE,Alu
chr3113370193CT4.09251E-05USF3-FALSEUCON34SINE,Alu
chr3195243006CA0.00982PPP1R2-FALSE
chr1726672363GA0.00599TNFAIP1+FALSE
chr110520072TC0.00529.FALSEAluSxSINE,Alu
chr1209796329TA0.00136LAMB3-FALSE
chr1144594373CG0.00715NBPF20+FALSE
chr42841551AG0.00258SH3BP2+TRUEAluJrSINE,Alu
chr237327666TC0.00028.FALSE
chr1109884775TG0.00026SORT1-FALSE
chr1033189606AG0.00011ITGB1-FALSE
chr1988503AT8.91206E-06AGRN+FALSE
chr116133978TC0.00625UQCRHL-FALSE
chr153289860AG0.00119ZYG11B+TRUEFRAMSINE,Alu
chr3107526033TA0.00056BBX+FALSE
chr128566461TC1.61071E-05.FALSEAluSx1SINE,Alu
chr119542679TC0.00738LOC101927895,EMC1+,-FALSEFRAMSINE,Alu
chr136067760TC0.00213PSMB2-TRUEAluSzSINE,Alu
chr1148010972AG0.00068NBPF8-FALSE
chr2234749258TC0.00710HJURP-FALSE
chr1218617066AT0.00211TGFB2-OT1,TGFB2+FALSE
chr1466209686TA7.37485E-06FUT8+FALSE(TT)nSINE,Alu
chr6153292179TC0.00755FBXO5-FALSE
chr1201846618CA0.00404IPO9+FALSE(CA)nSINE,Alu
chr110519982TC0.00417.FALSEAluJrSINE,Alu
chr1099504630GT0.00544ZFYVE27+FALSE
chr119447819TC0.00337UBR4-FALSE
chr574669972CT0.00711COL4A3BP-FALSE
chr1146740502CG0.00692CHD1L+FALSE
chr316357494GA2.87472E-06RFTN1-FALSE
chr1143189473CA0.00626LOC102723769-FALSE
chr230864980AG7.96700E-05LCLAT1+FALSE
chr110517276TC0.00283.FALSEAluJrSINE,Alu
chr3191116133CT0.00032CCDC50+FALSE
chr341281407GT0.00011CTNNB1+FALSE
chr133150643GA0.00606SYNC,RBBP4+,-FALSEAluJoSINE,Alu
chr2206981874TC0.00060.FALSEAluJbSINE,Alu
chr193602673CT0.00252MTF2+FALSE
chr1913884422AG0.00878MRI1+TRUEAluJrSINE,Alu
chr191990450AT0.00405CDC7+FALSELFSINE_VertSINE,Alu
chr1109239334AT0.00035PRPF38B+FALSE
chr29629298GC0.00590ADAM17-FALSE(TGT)nSINE,Alu
chr1591044378CT0.00453IQGAP1+FALSE
chr1146650337GT0.00589PDIA3P1+FALSE
chr116912014AC0.00029NBPF1-FALSE
chr8143739343TC0.00999JRK-FALSE
chr2208619461AG2.24939E-05CCNYL1+TRUEFAMSINE,Alu
chr10104661031AG0.00265BORCS7-ASMT,AS3MT+TRUEAluYSINE,Alu
chr6150045755TC0.00041NUP43-TRUEAluSqSINE,Alu
chr410447986TA0.00077ZNF518B-FALSE
chr140537923GA0.00609CAP1+FALSE(A)nSINE,Alu
chr193467751CA0.00182NFIC+FALSE(TA)nSINE,Alu
chr1549283066TG0.00065SECISBP2L-FALSE
chr116889820CT0.00012NBPF1-FALSE
chr1610624926TC0.00029EMP2-TRUEAluSx3SINE,Alu
chr1150704413TC0.00236CTSS-TRUEAluJoSINE,Alu
chr152817393TC0.00139CC2D1B-TRUEAluSg4SINE,Alu
chr5176728458GT0.00901RAB24-FALSE
chr1145512123AG3.10159E-05NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr110518591AT0.00811.FALSE
chr110517635TC0.00124.FALSEAluSx1SINE,Alu
chr147716043AG0.00794STIL-FALSE
chr220401855GA0.00107SDC1-FALSE
chr1113212976CT0.00904CAPZA1+FALSE
chr642048297AG0.00307TAF8+TRUEAluSq2SINE,Alu
chr1431916770TC0.00153LOC101927124,DTD2+,-FALSEAluSc8SINE,Alu
chr232534897AG0.00111.FALSEAluSx1SINE,Alu
chr1276423035AG0.00025PHLDA1-FALSE
chr124128467CT0.00481HMGCL-FALSE
chr347627382AT2.68370E-06SMARCC1-FALSE
chr1145693060AG2.60299E-05NBPF20,NBPF10+TRUEAluSz6SINE,Alu
chr537290397TC0.00305.FALSEAluSzSINE,Alu
chr7131241049GA0.00145PODXL-FALSE(GGCGAC)nSINE,Alu
chr1113001409CT2.24539E-06CTTNBP2NL+FALSEAluJrSINE,Alu
chr1341635234TC0.00395.FALSE
chr2010036845AG0.00110SNAP25-AS1,ANKEF1+,-FALSE
chr2106510201CA0.00638NCK2+FALSE
chr357882601CT0.00987SLMAP+FALSE
chr119545142AG0.00071LOC101927895,EMC1+,-FALSE
chr121795388AG0.00790NBPF3+FALSE
chr127108245TC0.00265ARID1A+FALSE
chr11119533723AG0.00169NECTIN1-FALSE
chr2198339559GT0.00712COQ10B+FALSE
chr1200521297CT0.00133KIF14-FALSE(T)nSINE,Alu
chr5130494984AT0.00018HINT1-FALSE
chr110177553CG0.00474UBE4B+FALSE
chr1148251009TC0.00065NBPF8,NBPF14,NBPF9-TRUE
chr1453242746TC0.00051GNPNAT1-TRUEAluJrSINE,Alu
chr1047221452TC0.00869.FALSEAluJbSINE,Alu
chr285546320GT0.00749TGOLN2-FALSEAluScSINE,Alu
chr119542463TC0.00111LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1108113839TC1.78857E-05VAV3-FALSE
chr133148210AG0.00342SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr1145281656AT0.00202NBPF20,NOTCH2NL+FALSE
chr1168218543AG0.00547.FALSEAluSzSINE,Alu
chr110518921CT0.00398.FALSEAluSx3SINE,Alu
chr1146650289CT0.00024PDIA3P1+FALSE
chr153291382AG0.00691ZYG11B+TRUEAluJrSINE,Alu
chr193827991AC0.00533DR1+FALSE
chr11251841TC0.00222CPSF3L-TRUEAluSq2SINE,Alu
chr399515750AG0.00216MIR548G-FALSE
chr18072233TC0.00647ERRFI1-FALSE
chr192862826AG0.00100.FALSEAluJrSINE,Alu
chr729962664AC0.00077SCRN1-FALSE
chr1145368461AC0.00542NBPF20,NBPF10+FALSE
chr4170037423GT0.00802SH3RF1-FALSE
chr167874849TC0.00266SERBP1-TRUEAluSxSINE,Alu
chr344790773TC0.00122KIAA1143-TRUEAluYSINE,Alu
chr129464350GC0.00209LOC642846+FALSE
chr125169201GT0.00341CLIC4+FALSE
chr116929100CT0.00249NBPF1-FALSELTR16B2SINE,Alu
chr140539201AG0.00028PPT1-FALSE
chr495173779TC0.00771SMARCAD1+FALSE
chr1145369709AG0.00073NBPF20,NBPF10+TRUEL1MC4SINE,Alu
chr764435685AT0.00239ZNF117-FALSE
chr237328082TC1.18454E-08.FALSE
chr3101542436AG0.00023NXPE3+TRUEAluJrSINE,Alu
chr116890598TA0.00375NBPF1-FALSE
chr167875011GT0.00359SERBP1-FALSE
chr146829013AG0.00360NSUN4+FALSE
chr237331555TC0.00992.FALSEAluJbSINE,Alu
chr1145511958AG0.00038NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr193804952GA0.00421CCDC18-AS1-FALSE
chr1179852074TC0.00338TOR1AIP1+FALSE
chr5141691255CA0.00323SPRY4-FALSE
chr1160967857TC0.00032F11R-TRUEAluSpSINE,Alu
chr11549354GA0.00132.FALSEHAL1SINE,Alu
chr167874859TC0.00209SERBP1-TRUEAluSxSINE,Alu
chr138463504CT0.00068FHL3-FALSE
chr140219280TC8.82951E-05PPIE+FALSE
chr299812429AG0.00504MRPL30+TRUEAluSxSINE,Alu
chr537290496TC0.00410.FALSEAluSzSINE,Alu
chr1179327008AG0.00168SOAT1+TRUE
chr3195436334AG0.00017LINC00969+TRUEAluJrSINE,Alu
chr1150190851GT0.00339ANP32E-FALSE
chr1186646405CA9.05139E-05PRSS23+FALSEL2bSINE,Alu
chr110520117TC0.00188.FALSEAluSxSINE,Alu
chr2217366499AG0.00183.FALSEAluSzSINE,Alu
chr794060361CT2.02320E-06COL1A2+FALSE
chr1182809019GA0.00274DHX9+FALSE
chr1244219904TG0.00482ZBTB18+FALSE
chr152817504TC0.00934CC2D1B-TRUEAluSg4SINE,Alu
chr1110136458AG0.00136GNAI3+FALSE
chr1474526984TC0.00496BBOF1,ALDH6A1+,-FALSEAluJoSINE,Alu
chr316301791GA4.37274E-05DPH3-FALSE
chr489181451TC8.32748E-05PPM1K-TRUEAluSx1SINE,Alu
chr110517950GC0.00449.FALSE
chr5175811091GA0.00592NOP16-FALSE
chr9130209956AT0.00221RPL12-FALSE
chr1231377081CT0.00895GNPAT+FALSE
chr1918476176AG0.00452PGPEP1+TRUEAluJbSINE,Alu
chr1160231113CT0.00204DCAF8-FALSE
chr7100957852TC1.09184E-06LOC101927746,IFT22+,-FALSEMADE1SINE,Alu
chr116932931CA0.00169NBPF1-FALSEL1MC2SINE,Alu
chr1100203693GA0.00142FRRS1-FALSE
chr1145513031AG0.00713NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr1559952905AG0.00150BNIP2-FALSE
chr7112579815GT0.00997BMT2-FALSE(CGC)nSINE,Alu
chr1144053567CT0.00353.FALSE
chr4119555142AG4.95460E-05LOC729218+FALSE
chr11118620064AG0.00192DDX6-FALSE(A)nSINE,Alu
chr126608019TA3.63623E-05.FALSE
chr1566678CT0.00559.FALSE
chr5178986987CT0.00651RUFY1+FALSE
chr110517659TC0.00012.FALSEAluSx1SINE,Alu
chr138280618GT0.00020MTF1-FALSE(T)nSINE,Alu
chr162821024CT0.00406SRRM2+FALSE
chr225013062TC0.00327.FALSE
chr42940265TC4.71601E-06NOP14-AS1,NOP14+,-FALSEAluJoSINE,Alu
chr133149363AG0.00368SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr2191799592AG0.00010GLS+TRUE
chr237430603TC0.00483CEBPZOS,CEBPZ+,-FALSE
chr2101622881CA1.48865E-05RPL31+FALSE
chr344790781TC0.00158KIAA1143-TRUEAluYSINE,Alu
chr110517456TC0.00722.FALSEAluSx1SINE,Alu
chr1155106227AT0.00137EFNA1+FALSE
chr2204162277AG0.00097CYP20A1+TRUEAluSxSINE,Alu
chr3182632684GA0.00116ATP11B+FALSE
chr146076599AG0.00116NASP+TRUEAluSxSINE,Alu
chr642857057AG0.00020RPL7L1+TRUEAluSpSINE,Alu
chr117345246AT0.00812SDHB-FALSE
chr1156613517CA0.00011BCAN+FALSE
chr310142949CT0.00721FANCD2,FANCD2OS+,-FALSE
chr2183643905AT0.00841DNAJC10+FALSE
chr3100083427TA0.00456TOMM70-FALSEFAMSINE,Alu
chr219908316CT0.00719TEKT4P2-FALSE
chr3195963500CT0.00014.FALSE
chr1115313039AG0.00895SIKE1-FALSE
chr6109001948GA0.00030FOXO3+FALSE(A)nSINE,Alu
chr1075009921TC5.40286E-05DNAJC9-AS1,MRPS16+,-FALSEAluYSINE,Alu
chr127879800TG0.00473AHDC1-FALSEMIRbSINE,Alu
chr116935130CT0.00019NBPF1-FALSE
chr1144606963GT0.00965NBPF20+FALSE
chr136067760TC0.00768PSMB2-TRUEAluSzSINE,Alu
chr3194789330GT0.00150XXYLT1-FALSEAluJrSINE,Alu
chr1201845880TA0.00491IPO9+FALSE
chr315112630CT0.00017RBSN-FALSEAluSq2SINE,Alu
chr186817074GT9.65311E-06ODF2L-FALSEL1PA7SINE,Alu
chr145975673AG0.00242MMACHC+TRUEAluSx4SINE,Alu
chr1179852074TC0.00033TOR1AIP1+FALSE
chr1155851645AG4.46102E-05SYT11+TRUEAluSq2SINE,Alu
chr2206987636TC0.00093.FALSEAluJbSINE,Alu
chr1200521412GA0.00588KIF14-FALSE
chr127216740GA0.00801GPN2-FALSE
chr1154454628TC0.00099SHE-TRUEAluSq2SINE,Alu
chr115991645TC0.00361.FALSEAluSpSINE,Alu
chr63021360TC0.00321HTATSF1P2-TRUEAluJr4SINE,Alu
chr1109181317CG0.00166FAM102B+FALSE
chr3126156660CG0.00182ZXDC-FALSE
chr136770073AT4.33965E-05THRAP3+FALSE
chr125894469AT0.00326LDLRAP1+FALSEMIRbSINE,Alu
chr19160975TC0.00858.FALSEAluJbSINE,Alu
chr417804852TC0.00056DCAF16-TRUEAluSxSINE,Alu
chr20279774AC0.00056ZCCHC3+FALSEL2bSINE,Alu
chr16683581AC0.00126PHF13+FALSE
chr1298943202AG6.48893E-05TMPO+TRUEAluSzSINE,Alu
chr1171509327GA0.00110PRRC2C+FALSE
chr228002602CA0.00037MRPL33+FALSE
chr1144053664AC0.00050.FALSE
chr167874859TC0.00071SERBP1-TRUEAluSxSINE,Alu
chr47060959TC0.00832GRPEL1-FALSE
chr417626174TA0.00534MED28+FALSE
chr203905907AG0.00325PANK2+TRUEAluSxSINE,Alu
chr110520154TC0.00021.FALSEAluSxSINE,Alu
chr232535692AG0.00236.FALSEAluJbSINE,Alu
chr133149443AG0.00897SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr228636644AG0.00269FOSL2+FALSE
chr825272423GT0.00659DOCK5+FALSE
chr638670804GC0.00400GLO1-FALSE
chr163790503TC0.00289FOXD3+FALSE
chr185488830TC0.00137MCOLN3-TRUEAluJrSINE,Alu
chr9133579674AG0.00018EXOSC2+TRUEAluSx3SINE,Alu
chr145975348TC0.00062MMACHC+FALSEAluSg7SINE,Alu
chr237429626AG0.00028CEBPZOS,CEBPZ+,-FALSEAluSzSINE,Alu
chr135319605AC0.00226SMIM12-FALSEAluSgSINE,Alu
chr1200375418CT0.00671ZNF281-FALSE
chr643738977CT0.00088VEGFA+FALSE
chr116889502TC0.00178NBPF1-TRUEL1MC4SINE,Alu

Differential Expression Gene Analysis