RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chrX	77083645	T	C	4.59952E-07	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr1	160967856	T	C	0.00100	F11R	-	TRUE	AluSp	SINE,Alu
chr1	55224131	T	C	0.00169	PARS2	-	FALSE
chr1	19545145	A	T	0.00510	LOC101927895,EMC1	+,-	FALSE
chr7	299881	A	G	1.23967E-06	FAM20C	+	FALSE
chr5	125961661	A	G	4.29043E-06	PHAX	+	TRUE	AluSz6	SINE,Alu
chr10	79552107	G	A	0.00092	DLG5	-	FALSE
chr7	128142833	A	G	6.82570E-05	METTL2B	+	TRUE	AluSx1	SINE,Alu
chr1	1534205	G	A	1.69659E-11	FNDC10	-	FALSE
chr12	133298349	A	G	2.42844E-07	PGAM5	+	TRUE	AluSp	SINE,Alu
chr3	48787118	T	C	0.00359	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	94995585	G	A	0.00266	F3	-	FALSE	AluSx	SINE,Alu
chr3	5026729	C	T	0.00539	BHLHE40	+	FALSE
chr1	10366487	T	G	0.00187	KIF1B	+	FALSE
chr3	15113810	T	C	0.00201	RBSN	-	TRUE	AluSz6	SINE,Alu
chr2	143638993	C	G	0.00016	KYNU	+	FALSE
chr2	37331119	T	C	0.00122		.	FALSE	AluSx1	SINE,Alu
chr3	141879040	T	C	0.00101	GK5	-	TRUE	FLAM_C	SINE,Alu
chr1	220231959	T	C	2.75997E-05	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	36068294	T	C	0.00321	PSMB2	-	TRUE	AluSc	SINE,Alu
chr7	156763172	A	G	0.00874	NOM1	+	TRUE	AluSx	SINE,Alu
chr8	12283473	C	T	0.00582	FAM86B2	-	FALSE
chr1	320211	A	G	6.69717E-05		.	FALSE	AluJo	SINE,Alu
chr1	26796922	G	C	0.00401	DHDDS	+	FALSE	FLAM_C	SINE,Alu
chr7	100278998	C	A	0.00022	GIGYF1	-	FALSE	(A)n	SINE,Alu
chr1	16945227	G	T	0.00353	CROCCP2	-	FALSE
chr1	1344757	A	G	0.00024		.	FALSE	AluSx1	SINE,Alu
chr7	6064012	T	C	0.00240	EIF2AK1	-	FALSE
chr1	1595603	C	G	0.00017	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr1	28662199	A	G	0.00138	MED18	+	TRUE	AluSq2	SINE,Alu
chr17	4840811	A	G	0.00554	SLC25A11	-	FALSE
chr1	36068295	T	C	0.00393	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	148752615	C	A	0.00042		.	FALSE
chr11	33694645	T	C	2.61039E-05	KIAA1549L	+	FALSE
chr3	88199298	T	C	0.00112	C3orf38	+	FALSE
chr1	26449327	A	G	0.00330	PDIK1L	+	FALSE
chr1	16889414	T	C	0.00384	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr22	18571477	A	G	4.57932E-05	PEX26	+	TRUE	AluSz	SINE,Alu
chr18	47919174	A	G	0.00820	SKA1	+	TRUE	AluYk4	SINE,Alu
chr7	6064010	C	A	0.00304	EIF2AK1	-	FALSE
chr15	65442523	G	A	0.00068	CLPX	-	FALSE	AluSg4	SINE,Alu
chr1	120165038	A	G	0.00926	ZNF697	-	FALSE
chr3	169810385	C	T	0.00621	PHC3	-	FALSE
chr1	9162223	T	C	0.00586		.	FALSE	AluSx	SINE,Alu
chr12	7074517	C	T	0.00369	PHB2	-	FALSE
chr16	9200168	A	T	0.00908	C16orf72	+	FALSE	AluSx1	SINE,Alu
chr1	90152146	C	T	1.61967E-05	LRRC8C	+	FALSE
chr7	44841791	C	T	0.00182	PPIA	+	FALSE
chr1	10521238	T	C	0.00232	DFFA	-	TRUE	AluY	SINE,Alu
chr1	16910172	G	A	0.00958	NBPF1	-	FALSE
chr6	33268621	T	C	0.00367		.	FALSE	AluY	SINE,Alu
chr1	19542250	T	C	9.94571E-09	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	67874859	T	C	0.00071	SERBP1	-	TRUE	AluSx	SINE,Alu
chr3	15113657	T	C	2.06253E-05	RBSN	-	TRUE	AluSz6	SINE,Alu
chr2	121749583	T	C	0.00120	GLI2	+	FALSE
chr1	160966351	T	C	0.00034	F11R	-	TRUE	AluSg	SINE,Alu
chr11	19245854	T	C	0.00078	E2F8	-	FALSE
chr5	179157298	T	G	0.00816	CANX	+	FALSE
chr14	90865627	T	C	0.00162	CALM1	+	FALSE
chr1	19810693	G	C	0.00042	CAPZB	-	FALSE
chr2	87821033	C	A	0.00474		.	FALSE
chr14	75202856	A	G	3.12821E-09	FCF1	+	TRUE	AluSx	SINE,Alu
chr1	6282298	T	C	2.81673E-05	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	53288897	A	G	0.00439	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	26143725	A	T	0.00291	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	3697550	C	A	0.00078	LRRC47	-	FALSE	AluSc	SINE,Alu
chr6	52860422	G	C	0.00024		.	FALSE	7SK	SINE,Alu
chr3	42266360	T	C	0.00279	TRAK1	+	FALSE
chr22	18571475	A	G	0.00019	PEX26	+	TRUE	AluSz	SINE,Alu
chr19	9672989	T	C	0.00044		.	FALSE	AluSx3	SINE,Alu
chr3	195963399	G	A	0.00341		.	FALSE
chr6	26095454	A	G	0.00284	HFE	+	TRUE	AluY	SINE,Alu
chr2	128950515	A	G	0.00052	UGGT1	+	TRUE	AluSc	SINE,Alu
chr1	54692341	T	C	0.00027	SSBP3	-	FALSE	(T)n	SINE,Alu
chr6	42849616	A	G	0.00092	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	226589958	G	A	0.00613	PARP1	-	FALSE
chr1	6283273	T	C	0.00109	ICMT	-	TRUE	AluSx3	SINE,Alu
chr3	172224303	A	G	0.00524	TNFSF10	-	FALSE
chr9	125866693	C	T	0.00255	RABGAP1	+	FALSE
chr8	8750467	A	G	0.00131	MFHAS1	-	FALSE
chr1	16928737	C	T	0.00448	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr1	31902343	T	C	1.48709E-05	SERINC2	+	FALSE
chr16	29454297	T	C	0.00104	SMG1P6,BOLA2-SMG1P6	-	TRUE	Tigger4a	SINE,Alu
chr1	114306374	G	A	5.13313E-06	RSBN1	-	FALSE
chr2	74090064	A	T	0.00197	STAMBP	+	FALSE
chr12	125512173	A	G	0.00285		.	FALSE	AluSx1	SINE,Alu
chr1	28261661	G	A	0.00872	SMPDL3B	+	FALSE
chr1	146650542	A	G	0.00172	PDIA3P1	+	FALSE
chr2	37330487	T	C	0.00242		.	FALSE	AluSq2	SINE,Alu
chr1	43996594	T	C	0.00836	PTPRF	+	FALSE	(CGGCTC)n	SINE,Alu
chr1	36642420	T	C	0.00188	MAP7D1	+	FALSE
chr7	75958151	G	C	0.00250	YWHAG	-	FALSE
chr1	8045340	C	A	0.00056	PARK7	+	FALSE
chr1	33149400	A	G	0.00407	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	9330479	C	T	0.00027	H6PD	+	FALSE
chr2	98272734	A	G	0.00996	ACTR1B	-	FALSE
chr16	48386354	A	G	0.00064	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr1	109855150	A	C	0.00062	SORT1	-	FALSE	A-rich	SINE,Alu
chr4	89181456	T	C	0.00024	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr1	1653093	A	G	0.00674	CDK11B,CDK11A	-	FALSE	L2	SINE,Alu
chr6	8014786	T	C	0.00086	BLOC1S5-TXNDC5,BLOC1S5,EEF1E1-BLOC1S5	-	TRUE	AluSz	SINE,Alu
chr1	24933701	A	G	0.00372	NCMAP	+	TRUE	AluJr	SINE,Alu
chr1	19585554	A	G	2.15626E-06	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr15	42192345	T	C	0.00039	EHD4	-	TRUE
chr1	880052	C	T	0.00231	NOC2L	-	FALSE
chr15	71124666	C	A	4.50846E-10	LARP6	-	FALSE
chr2	3592602	T	C	0.00232	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr1	36067817	T	C	0.00339	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	10517659	T	C	0.00010		.	FALSE	AluSx1	SINE,Alu
chr2	105881071	C	A	0.00851	TGFBRAP1	-	FALSE
chr1	231154935	C	T	0.00093	FAM89A	-	FALSE
chr1	150281011	A	G	0.00016	MRPS21	+	TRUE	AluSz	SINE,Alu
chr19	42375624	A	G	0.00049		.	FALSE	AluSx	SINE,Alu
chr1	16933638	G	A	4.07227E-05	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr7	22984967	A	G	0.00108	FAM126A	-	FALSE
chr1	204521616	A	G	4.81420E-06	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	1593750	A	G	0.00191	CDK11B,SLC35E2B	-	FALSE
chr5	77655342	T	C	0.00919	SCAMP1-AS1	-	TRUE	AluSx4	SINE,Alu
chr1	8045341	T	A	0.00750	PARK7	+	FALSE
chr1	3546128	A	G	0.00213	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr1	183112505	T	C	0.00525	LAMC1	+	FALSE
chr1	110950295	C	A	0.00359	LAMTOR5	-	FALSE
chr3	196659892	T	G	0.00620	SENP5	+	FALSE	AluSz	SINE,Alu
chr1	169799880	G	T	0.00118	C1orf112	+	FALSE
chr1	173864944	G	T	2.40127E-05		.	FALSE
chr1	87379494	A	T	0.00364	SEP15	-	FALSE
chr1	93307479	C	A	0.00809	FAM69A,RPL5	+,-	FALSE
chr8	73958240	G	A	0.00093	TERF1	+	FALSE
chr4	84011911	G	A	0.00675	PLAC8	-	FALSE
chr7	197322	A	G	2.25895E-09	FAM20C	+	FALSE
chr3	45722253	A	G	0.00670	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	16717888	G	A	0.00979	SZRD1	+	FALSE
chr1	207942535	A	G	0.00102	CD46	+	TRUE	AluSg4	SINE,Alu
chr5	176863519	G	C	0.00567	GRK6	+	FALSE
chr5	151041877	C	A	1.29615E-05	SPARC	-	FALSE
chr1	145513090	A	G	0.00017	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	6583109	T	C	6.65543E-05	NOL9	-	TRUE	AluSx4	SINE,Alu
chr14	74526984	T	C	0.00496	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr1	173457945	G	A	0.00287	PRDX6	+	FALSE
chr6	33377511	T	C	5.31992E-06		.	FALSE	(TG)n	SINE,Alu
chr7	44917291	T	C	0.00019	PURB	-	TRUE	AluSz	SINE,Alu
chr1	211920314	T	C	0.00938	LPGAT1	-	FALSE
chr18	29410068	C	T	0.00807	TRAPPC8	-	FALSE
chr6	79595097	A	G	0.00712	IRAK1BP1	+	FALSE
chr1	53288862	A	G	0.00799	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr20	18469054	T	C	0.00522	RBBP9	-	TRUE	AluJr	SINE,Alu
chr2	99812465	A	G	0.00367	MRPL30	+	TRUE	AluSx	SINE,Alu
chr6	79649800	C	G	0.00864	PHIP	-	FALSE
chr1	25889571	G	A	0.00344	LDLRAP1	+	FALSE
chr1	11810674	G	A	0.00279	AGTRAP	+	FALSE
chr1	10517691	T	C	9.61087E-05		.	FALSE	AluSx1	SINE,Alu
chr1	120612006	G	A	0.00602	NOTCH2	-	FALSE
chr9	19376248	A	T	0.00821		.	FALSE
chr4	103718454	T	A	0.00446	LOC102723704,UBE2D3	+,-	FALSE
chr1	20976032	T	C	0.00010	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	113672640	A	G	0.00629		.	FALSE	AluJb	SINE,Alu
chr1	145513016	A	G	0.00400	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr3	126755134	C	T	0.00920	PLXNA1	+	FALSE
chr1	145688973	A	G	0.00017	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr3	172115465	T	A	0.00170	FNDC3B	+	FALSE
chr9	115936771	C	T	1.86133E-10	FKBP15	-	FALSE
chr5	125961166	A	G	0.00732	PHAX	+	TRUE	AluSz	SINE,Alu
chr1	10521238	T	C	0.00096	DFFA	-	TRUE	AluY	SINE,Alu
chr1	28920944	A	G	0.00446	RAB42	+	TRUE	AluSx	SINE,Alu
chr2	61277798	A	G	0.00077	PEX13	+	TRUE	AluY	SINE,Alu
chr1	166820104	G	A	0.00477	POGK	+	FALSE	MER1B	SINE,Alu
chr3	93780109	G	C	8.09346E-05	DHFR2	-	FALSE
chr1	44072066	C	T	0.00846	PTPRF	+	FALSE
chr16	10624997	T	C	1.19407E-05	EMP2	-	TRUE	AluSx3	SINE,Alu
chr3	196670094	G	C	5.91401E-08	NCBP2-AS2	+	FALSE
chr1	148004422	T	A	0.00733	NBPF8	-	FALSE
chr4	101946461	G	T	0.00442	PPP3CA	-	FALSE	(T)n	SINE,Alu
chr5	149364144	A	G	0.00014	SLC26A2	+	TRUE	AluSc8	SINE,Alu
chr9	132573290	C	T	0.00881	TOR1B	+	FALSE
chr1	53291382	A	G	0.00114	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr12	1611798	C	T	0.00338	LINC00942	+	FALSE
chr5	149363414	A	G	0.00458	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr1	900721	T	C	0.00109	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr2	43625184	T	A	0.00587	THADA	-	FALSE
chr1	160990875	T	C	9.42851E-06	F11R	-	FALSE
chr1	1309464	C	T	3.88389E-12	AURKAIP1	-	FALSE
chr1	1337735	T	G	3.46713E-05	MRPL20	-	FALSE
chr1	201845899	G	T	1.72907E-05	IPO9	+	FALSE
chr1	10518591	A	T	0.00545		.	FALSE
chr11	68523337	T	C	0.00016	CPT1A	-	TRUE	AluSq	SINE,Alu
chr1	36067752	T	C	0.00123	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	111489899	C	A	0.00041	LRIF1	-	FALSE
chr1	10520154	T	C	0.00018		.	FALSE	AluSx	SINE,Alu
chr2	189877305	T	C	0.00612	COL3A1	+	FALSE
chr4	83406544	C	T	0.00328	TMEM150C	-	FALSE
chr3	195965115	A	T	0.00098	PCYT1A	-	FALSE
chr7	29961939	G	T	1.47033E-05	SCRN1	-	FALSE
chr1	28836900	A	G	0.00018	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr7	6064015	A	T	0.00746	EIF2AK1	-	FALSE
chr1	53289860	A	G	0.00346	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	145281656	A	T	0.00839	NBPF20,NOTCH2NL	+	FALSE
chr2	103332887	T	A	0.00515	MFSD9	-	FALSE	L2d2	SINE,Alu
chr1	145512014	A	G	0.00370	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr14	50053350	T	A	0.00071		.	FALSE	7SLRNA	SINE,Alu
chr7	102119322	T	C	0.00834	POLR2J	-	FALSE
chr5	110463616	G	T	0.00264	WDR36	+	FALSE	(T)n	SINE,Alu
chr19	39669597	T	C	0.00610	PAK4	+	FALSE	(TG)n	SINE,Alu
chr12	53435276	T	G	4.45732E-05	EIF4B	+	FALSE
chr4	2940486	T	C	7.87098E-05	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	179829505	T	C	0.00592	TOR1AIP2	-	TRUE	AluJr	SINE,Alu

RBP	YBX1
Knock-Method	siRNA
RBP Family	CSD
Biosample Name	MDA-231-D
Tissue Type	Breast
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	GEO
Profile ID	GSE79586
Platform	GPL167891
Pubmed ID	28813674

YBX1 - Target Gene Network