Dataset Overview
RBP
IGF2BP1
Knock-Method
siRNA_array
RBP Family
KH_1
Biosample Name
HEK293
Tissue Type
Kidney
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
GEO
Profile ID
GSE21575
Platform
GPL570
Pubmed ID
20371350
IGF2BP1 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of IGF2BP1
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
AAED1
-
-
0.51001
0.02330
0.13405
AAGAB
-
-
-1.22177
0.00092
0.03919
AAR2
-
-
0.28391
0.02919
0.15171
AARS
-
-
0.35794
0.01436
0.10632
AASS
-
-
-0.68940
0.01635
0.11402
ABAT
-
-
-0.64903
0.02511
0.13954
ABCA3
-
-
-0.90717
0.00176
0.04820
ABCB1
-
-
0.71906
0.02405
0.13611
ABCB10
-
-
-0.52235
0.02535
0.14037
ABCB4
-
-
0.20123
0.02108
0.12840
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Function Analysis of Target Genes of IGF2BP1
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
No data available in table
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
No data available in table
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
No data available in table
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
No data available in table
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
No data available in table
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression