Dataset Overview
RBP
TARDBP
Knock-Method
siRNA_array
RBP Family
RRM_1
Biosample Name
Neuroblastoma_cell
Tissue Type
Brain
Biosample Type
Cell line
# of Control
3
# of Treat
3
Species
Human
Data Source
GEO
Profile ID
GSE67027
Platform
GPL5176
Pubmed ID
N.A.
TARDBP - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of TARDBP
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A4GALT
-
-
0.44000
0.00486
0.03232
AAAS
-
-
-0.45667
0.00076
0.00936
AACS
-
-
-0.24000
0.01976
0.08691
AAMP
-
-
-0.54333
0.00030
0.00511
AARSD1
-
-
-0.48000
0.00031
0.00521
AASS
-
-
-0.22667
0.03853
0.13627
AATF
-
-
-0.20667
0.02529
0.10269
ABCA12
-
-
-3.38000
1.61337E-08
8.28476E-05
ABCB10
-
-
0.39333
0.01694
0.07819
ABCB7
-
-
-0.46000
0.00379
0.02728
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Function Analysis of Target Genes of TARDBP
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
No data available in table
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
No data available in table
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
No data available in table
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
No data available in table
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
No data available in table
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
No data available in table
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression