Dataset Overview
RBP
RBM47
Knock-Method
shRNA
RBP Family
RRM_1
Biosample Name
H358
Tissue Type
Lung
Biosample Type
Cell line
# of Control
3
# of Treat
3
Species
Human
Data Source
GEO
Profile ID
GSE75491
Platform
GPL11154
Pubmed ID
27044866
RBM47 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of RBM47
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
AAAS
16.94
15.3
-0.15668
0.02534
0.07767
AAED1
4.95
5.79
0.18607
0.02838
0.08500
AARS
191.66
144.57
-0.47975
9.08563E-24
1.08708E-21
AASDH
9.11
11.14
0.19002
0.00405
0.01789
AASS
2.85
4.53
0.56573
1.15453E-09
2.43213E-08
ABCA1
8.5
6.33
-0.46966
5.07287E-12
1.52935E-10
ABCA11P
8.72
10.73
0.23430
0.00253
0.01203
ABCA12
2.68
2.29
-0.22748
0.00996
0.03669
ABCA13
0.64
0.42
-0.36542
0.01228
0.04363
ABCA2
33.45
38.91
0.15628
0.02372
0.07374
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Function Analysis of Target Genes of RBM47
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AARSD1
41105740_41105795_41103816_41103911_41106892_41106984
0.00385
0.131
DataSet_02_17
View details
ABCB7
74334588_74334666_74332720_74332807_74375939_74376114
0.00003
-0.419
DataSet_02_17
View details
ABCB7
74334588_74334669_74332720_74332807_74375939_74376107
0.00000
-0.73
DataSet_02_17
View details
ABCB8
150728327_150728378_150725536_150725697_150730691_150731004
0.00698
-0.333
DataSet_02_17
View details
ABCD4
74766250_74766378_74764538_74764772_74766852_74766971
0.00007
-0.413
DataSet_02_17
View details
ABHD11
73151258_73151440_73150423_73151021_73151891_73152065
0.00000
0.236
DataSet_02_17
View details
ABHD16A
31669850_31669907_31668718_31668805_31670926_31671088
0.00026
-0.215
DataSet_02_17
View details
AC005324.4
15603586_15603680_15603361_15603482_15604465_15604554
0.00320
-0.138
DataSet_02_17
View details
AC005670.2
45012394_45012535_45009432_45009565_45015964_45016070
0.00005
0.238
DataSet_02_17
View details
AC007285.1
30028505_30028840_30028215_30028409_30047843_30047993
0.00035
0.457
DataSet_02_17
View details
Showing 1 to 10 of 815 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC1
16177222_16177399_16180680_16180848_16173208_16173335
0.00185
-0.099
DataSet_02_17
View details
ACY1
52019376_52019481_52019867_52019962_52018062_52018174
0.00154
-0.28
DataSet_02_17
View details
ALG13
110925359_110925463_110925463_110925522_110924397_110924652
0.00005
0.436
DataSet_02_17
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AURKA
54963367_54963562_54963742_54963840_54963211_54963258
0.00044
-0.23
DataSet_02_17
View details
CBWD5
70475018_70475078_70475443_70475489_70473436_70473474
0.00000
0.769
DataSet_02_17
View details
CCNB1IP1
20785952_20786133_20786414_20786629_20784385_20784719
0.00237
-0.414
DataSet_02_17
View details
CCNB1IP1
20785953_20786133_20786414_20786629_20784385_20784719
0.00000
-0.722
DataSet_02_17
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CD164
109691613_109691670_109697276_109697315_109687720_109690220
0.00375
0.036
DataSet_02_17
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CDH1
68842595_68842751_68844099_68844244_68842326_68842470
0.00275
-0.35
DataSet_02_17
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CDK10
89753996_89754223_89755659_89755732_89753097_89753205
0.00434
-0.274
DataSet_02_17
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Showing 1 to 10 of 72 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABHD11
73151550_73152065_73151891_73152065_73151258_73151440
0.00008
-0.353
DataSet_02_17
View details
ABTB1
127393233_127393296_127393233_127393261_127393387_127393443
0.00076
-0.733
DataSet_02_17
View details
ACOX1
73974871_73975209_73975045_73975209_73974614_73974774
0.00616
0.278
DataSet_02_17
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ACTG1
79479640_79479806_79479759_79479806_79479257_79479386
0.00455
0.104
DataSet_02_17
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ADAM15
155034379_155034593_155034379_155034451_155034720_155034845
0.00343
0.145
DataSet_02_17
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ADPRM
10608226_10608932_10608226_10608844_10609754_10609871
0.00020
-0.255
DataSet_02_17
View details
AFAP1L2
116056978_116057172_116056990_116057172_116056736_116056859
0.00012
-0.249
DataSet_02_17
View details
ALDOA
30078554_30078687_30078554_30078654_30078770_30078982
0.00347
-0.08
DataSet_02_17
View details
ALG13
110924406_110924652_110924406_110924527_110925359_110925522
0.00237
0.333
DataSet_02_17
View details
ALG13
110925359_110925522_110925359_110925463_110928192_110928331
0.00008
-0.407
DataSet_02_17
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Showing 1 to 10 of 129 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCA2
139906936_139907089_139906936_139907042_139907163_139907377
0.00470
0.36
DataSet_02_17
View details
ABCD4
74759856_74759982_74759856_74759951_74761850_74761901
0.00424
0.352
DataSet_02_17
View details
ABCD4
74759856_74760013_74759856_74759951_74761850_74761901
0.00216
0.378
DataSet_02_17
View details
ABHD11
73151258_73151550_73151258_73151440_73151891_73152065
0.00026
-0.291
DataSet_02_17
View details
ACY1
52019349_52019481_52019376_52019481_52019222_52019287
0.00637
0.263
DataSet_02_17
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ADCY10P1
41086662_41086846_41086692_41086846_41085867_41085923
0.00827
-0.245
DataSet_02_17
View details
AFDN
168272893_168273057_168272896_168273057_168271062_168271178
0.00350
-0.253
DataSet_02_17
View details
AL157392.3
13696183_13696427_13696352_13696427_13694407_13694489
0.00001
-0.6
DataSet_02_17
View details
ALDH6A1
74537897_74538363_74537897_74538200_74538598_74538677
0.00009
-0.433
DataSet_02_17
View details
ALG12
50297984_50298154_50297984_50298032_50301368_50301592
0.00156
-0.125
DataSet_02_17
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Showing 1 to 10 of 165 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC026412.1
1632758_1633021_1632758_1632866_1632959_1633021
0.00119
-0.362
DataSet_02_17
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ACADVL
7127639_7127871_7127639_7127712_7127802_7127871
0.00174
0.348
DataSet_02_17
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ACBD4
43213474_43214143_43213474_43213599_43213866_43214143
0.00001
0.483
DataSet_02_17
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ACTG1
79479257_79479807_79479257_79479386_79479759_79479807
0.00219
0.047
DataSet_02_17
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AKR1B1
134132049_134132813_134132049_134132133_134132212_134132813
0.00206
0.106
DataSet_02_17
View details
ANAPC5
121764898_121766300_121764898_121765034_121766118_121766300
0.00007
0.361
DataSet_02_17
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AP1G2
24035024_24035369_24035024_24035101_24035272_24035369
0.00905
0.217
DataSet_02_17
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ARAP1
72398483_72398783_72398483_72398547_72398732_72398783
0.00002
-0.495
DataSet_02_17
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ARHGAP26
142586762_142587038_142586762_142586873_142587008_142587038
0.00364
0.137
DataSet_02_17
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ARHGAP27
43481966_43482472_43481966_43482047_43482393_43482472
0.00005
-0.556
DataSet_02_17
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
8072233
T
C
0.00647
ERRFI1
-
FALSE
chr1
145513114
A
G
7.84037E-06
NBPF20,NBPF10,RBM8A,GNRHR2
+,-
FALSE
AluSz6
SINE,Alu
chr1
160967857
T
C
0.00806
F11R
-
TRUE
AluSp
SINE,Alu
chr1
1309464
C
T
1.11022E-16
AURKAIP1
-
FALSE
chr1
16929100
C
T
0.00249
NBPF1
-
FALSE
LTR16B2
SINE,Alu
chr1
32373858
A
T
0.00100
PTP4A2
-
FALSE
chr1
67874689
T
C
0.00338
SERBP1
-
TRUE
AluSx3
SINE,Alu
chr1
121133733
G
A
0.00455
SRGAP2-AS1,SRGAP2B,SRGAP2C
+,-
FALSE
L1MB4
SINE,Alu
chr1
87328403
A
T
0.00946
SEP15
-
FALSE
chr1
1419690
A
G
0.00464
ATAD3B
+
TRUE
AluYk2
SINE,Alu
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression