Dataset Overview
RBPRBM47
Knock-MethodshRNA
RBP FamilyRRM_1
Biosample NameH358
Tissue TypeLung
Biosample TypeCell line
# of Control3
# of Treat3
SpeciesHuman
Data SourceGEO
Profile IDGSE75491
PlatformGPL11154
Pubmed ID27044866

RBM47 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of RBM47
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of RBM47


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr12120898998AG0.00081GATC+TRUEAluJrSINE,Alu
chr315114318TC0.00067RBSN-TRUEAluYSINE,Alu
chr2101587455CT0.00178NPAS2+FALSE
chr18072233TC0.00647ERRFI1-FALSE
chr1145513114AG7.84037E-06NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr1160967857TC0.00806F11R-TRUEAluSpSINE,Alu
chr11309464CT1.11022E-16AURKAIP1-FALSE
chr116929100CT0.00249NBPF1-FALSELTR16B2SINE,Alu
chr132373858AT0.00100PTP4A2-FALSE
chr456236845AG6.76031E-06SRD5A3,SRD5A3-AS1+,-FALSEAluJbSINE,Alu
chr2220370192CT0.00055GMPPA+FALSE
chr5135392426TC8.62804E-07TGFBI+FALSE
chr167874689TC0.00338SERBP1-TRUEAluSx3SINE,Alu
chr1121133733GA0.00455SRGAP2-AS1,SRGAP2B,SRGAP2C+,-FALSEL1MB4SINE,Alu
chr187328403AT0.00946SEP15-FALSE
chr1022824828AT0.00225PIP4K2A-FALSE
chr775958149AC0.00050YWHAG-FALSE
chr5151041869TA0.00305SPARC-FALSE
chr3196670090GA6.78352E-09NCBP2-AS2+FALSE
chr11419690AG0.00464ATAD3B+TRUEAluYk2SINE,Alu
chr194351062TA0.00676GCLM-FALSE
chr345722396AG0.00231LIMD1,LIMD1-AS1+,-FALSEAluSzSINE,Alu
chr120976759CT2.31016E-05PINK1,PINK1-AS+,-FALSE
chr1160967899TC0.00011F11R-TRUEAluSpSINE,Alu
chr153288894AG0.00066ZYG11B+TRUEAluJoSINE,Alu
chr6109785909TC0.00556MICAL1,ZBTB24-TRUEAluJrSINE,Alu
chr8145159708AG0.00101MAF1+FALSE
chr226617209AG5.06124E-05EPT1+FALSEAluSzSINE,Alu
chr126143727AT0.00917SEPN1+FALSEAluSxSINE,Alu
chr457326315AG0.00025PAICS+TRUEAluJrSINE,Alu
chr310302172GA0.00202TATDN2+FALSE
chr1223945582GT0.00304CAPN2+FALSEAluSxSINE,Alu
chr10101992810TC0.00149CWF19L1-TRUEAluJbSINE,Alu
chr593018883AT0.00393FAM172A-FALSE(TCA)nSINE,Alu
chr2188385337CT0.00210TFPI-FALSEL1MC3SINE,Alu
chr1211921702TC0.00014LPGAT1-FALSE
chr136534736AG0.00016.FALSEAluJoSINE,Alu
chr119542456TC0.00193LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr167874540TC0.00555SERBP1-FALSE
chr5118174668TC1.32199E-05DTWD2-TRUEAluYSINE,Alu
chr124798089GA0.00815NIPAL3+FALSE
chr11252687TC0.00459CPSF3L-TRUEAluSpSINE,Alu
chr110521200TC0.00096DFFA-TRUEAluYSINE,Alu
chr1233086456TC7.28865E-05NTPCR+FALSE
chr210580506AT0.00294ODC1-FALSE
chr146033106TC0.00547AKR1A1+FALSE
chr210198113CA0.00893CYS1-FALSE
chr110517659TC0.00012.FALSEAluSx1SINE,Alu
chr1145324364CG0.00343NBPF20,NBPF10+FALSE
chr634249357TA0.00373.FALSE
chr116889563CA0.00037NBPF1-FALSE
chr344791553TC1.10852E-07KIAA1143-TRUEAluJrSINE,Alu
chr1179044100AG0.00487FAM20B+TRUEAluSxSINE,Alu
chr128824065CT0.00345PHACTR4+FALSE
chr2112252629AC0.00107MIR4435-2HG-FALSE
chr2232325426AT0.00547NCL-FALSE(TCA)nSINE,Alu
chr11273359TG0.00254DVL1-FALSE
chr286250101TC0.00038LOC90784-TRUEAluSxSINE,Alu
chr111710798TG0.00328FBXO2-FALSE(CCT)nSINE,Alu
chr349394834GA0.00000GPX1-FALSE
chr128835847AG5.60567E-05SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr168167935AG0.00390GNG12-FALSE
chrX54587196AG0.00392GNL3L+TRUEAluSq2SINE,Alu
chr1352602919AC0.00117ALG11,UTP14C+FALSE
chr138275432GT0.00536MTF1-FALSE
chr12121118CT0.00234FAAP20-FALSE
chr3196556141GA0.00534PAK2+FALSE
chr127074517CT0.00369PHB2-FALSE
chr1736936846CT0.00277PIP4K2B-FALSE
chr23193040GA0.00650TSSC1-FALSE
chr399517479TC8.06312E-05MIR548G-FALSE(TG)nSINE,Alu
chr1145512014AG0.00370NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr237331119TC0.00122.FALSEAluSx1SINE,Alu
chr4761850TC0.00026PCGF3+FALSE
chr1184762627TC0.00416FAM129A-TRUEAluSzSINE,Alu
chr286248309TC0.00808LOC90784-FALSE
chr1214527252GA0.00181PTPN14-FALSEMADE2SINE,Alu
chr140214313AG0.00330PPIE+TRUEAluSq2SINE,Alu
chr2227600369AG0.00577IRS1-FALSE
chr126765033AG0.00324DHDDS+TRUEAluJrSINE,Alu
chr4153898316AG0.00312FHDC1+TRUEAluJoSINE,Alu
chr286364710TC0.00273PTCD3+FALSE
chr29629290TG0.00180ADAM17-FALSE(TGT)nSINE,Alu
chr19161199TC0.00468.FALSEAluSxSINE,Alu
chr174672640TA0.00011FPGT-TNNI3K,FPGT+FALSE
chr1145695329AG0.00400NBPF20,NBPF10+FALSEAluSzSINE,Alu
chr1179326296AG0.00171SOAT1+TRUE
chr344485914TC0.00920ZNF445-FALSEMIRbSINE,Alu
chr9137330716AC0.00058RXRA+FALSE
chr237327662TC0.00058.FALSE
chr1244219905GT0.00772ZBTB18+FALSE
chr116945027TC2.31134E-07CROCCP2-FALSEL1ME3CzSINE,Alu
chr34403537CT0.00055SUMF1-FALSEMIR3SINE,Alu
chr11534614TC5.67045E-11FNDC10-FALSE
chr1145284132GA0.00338NBPF20,NOTCH2NL+FALSE(TG)nSINE,Alu
chr1114306369AT0.00341RSBN1-FALSE
chr1623478710CA0.00335GGA2-FALSE(AC)nSINE,Alu
chr177557891TC0.00557PIGK-FALSE
chr5140594466GA0.00209PCDHB13+FALSE
chr127202844TC0.00146.FALSEAluSq2SINE,Alu
chr314986461TC3.09385E-06FGD5-AS1-TRUEAluSq2SINE,Alu
chr642854580AG0.00330RPL7L1+TRUEAluScSINE,Alu
chr2100897573GA0.00231LONRF2-FALSE
chr1206580231AG0.00100SRGAP2+FALSE
chr1144014068TC0.00029.FALSE
chr1749041732TC0.00135SPAG9-TRUEAluSxSINE,Alu
chr19331101AG0.00072H6PD+FALSEAluSxSINE,Alu
chr634252328TA0.00062.FALSE(T)nSINE,Alu
chr540828060TC0.00253LOC100506548-FALSE
chr1226171340TC0.00462SDE2-TRUEBC200SINE,Alu
chr167451522AT0.00949MIER1+FALSE
chr117345246AT0.00812SDHB-FALSE
chr224225013AG0.00103.FALSEAluSxSINE,Alu
chr1765334726TC7.47982E-07PSMD12-TRUEAluSqSINE,Alu
chr16282298TC2.81673E-05ICMT-TRUEAluSzSINE,Alu
chr167874731TC0.00613SERBP1-TRUEAluSx3SINE,Alu
chr1144930596CA0.00356NBPF20,PDE4DIP+,-FALSE
chr830536078TC5.73232E-10GSR-FALSEAluJrSINE,Alu
chr110043840GT6.08980E-05NMNAT1+FALSE
chr455147769CT0.00079PDGFRA+FALSE
chr3195415529CT0.00819LINC00969,SDHAP2+FALSEL1ME2SINE,Alu
chr1151554503TC0.00619TUFT1+FALSE
chr3181430141GC0.00086SOX2-OT,SOX2+FALSE
chr116889004CT0.00977NBPF1-FALSE
chr1256510697GA0.00055RPL41+FALSE
chr138155698GT0.00368C1orf109-FALSEAluSx1SINE,Alu
chr1913884096AG1.54361E-06MRI1+TRUEAluSzSINE,Alu
chr153359187AG0.00813ZYG11A+TRUEAluSxSINE,Alu
chr2174086933CA0.00457ZAK,MLK7-AS1+,-FALSEAluJoSINE,Alu
chr2209180073CA0.00478PIKFYVE+FALSE
chr116258610CG0.00142SPEN+FALSE
chr170728523AG0.00051ANKRD13C-FALSE
chr7100739267GA0.00654.FALSEAluSxSINE,Alu
chr1149819554TC0.00137.FALSEMLT1C2SINE,Alu
chr1910431799GT0.00145RAVER1-FALSE
chr1230975454AG0.00438C1orf198-FALSE
chr1231557255CG0.00056EGLN1-FALSE(GCC)nSINE,Alu
chr1179044100AG0.00897FAM20B+TRUEAluSxSINE,Alu
chr373116345TA5.66390E-05PPP4R2+FALSE
chr1228334277CT0.00256GUK1+FALSE
chr116932912TC0.00525NBPF1-FALSEL1MC2SINE,Alu
chr124989266AT0.00392SRRM1+FALSE
chr1953914395AG0.00227ZNF765+TRUEAluSxSINE,Alu
chr7115898442GC2.36867E-05TES+FALSEAluSxSINE,Alu
chr122418284GT0.00024CDC42+FALSE(T)nSINE,Alu
chr349395757GA3.97123E-06GPX1-FALSE
chr895805071AG1.12730E-06DPY19L4+TRUEAluYf1SINE,Alu
chr366024384GC0.00096MAGI1-FALSE
chr255452459GT5.59903E-07CLHC1-FALSE
chr110519951TC0.00499.FALSEAluJrSINE,Alu
chr1161338504CG6.09223E-05.FALSE
chr1197070442GT0.00468ASPM-FALSE
chr111783001AG0.00012.FALSEAluSxSINE,Alu
chr124293612GA0.00366.FALSE
chr254896390GT0.00110SPTBN1+FALSE
chr1145513098AG0.00171NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr131837516GC5.10721E-05ZCCHC17+FALSE
chr1203711876GA0.00444ATP2B4+FALSE
chr110517653TC0.00792.FALSEAluSx1SINE,Alu
chr72473761TC0.00126CHST12+FALSE(CCGC)nSINE,Alu
chr238961523CA0.00790GALM+FALSEAluSc8SINE,Alu
chr19428685TG0.00416SPSB1+FALSE
chr357551513AG0.00037PDE12+TRUEAluScSINE,Alu
chr721941589TA0.00535CDCA7L-FALSE
chr2120021785TC0.00751STEAP3+FALSE
chr531554465AT1.69098E-06C5orf22+FALSE
chr1146215138AG0.00038NBPF20,NBPF10,NBPF25P+FALSE
chr1109856391GC0.00569SORT1-FALSE
chr220648946CT0.00531RHOB+FALSE
chr11662547TC0.00556SLC35E2-TRUEAluYSINE,Alu
chr581571876AT0.00013RPS23-FALSE
chr564016339CT6.96791E-06SREK1IP1-FALSE
chr1109855152AC0.00227SORT1-FALSEA-richSINE,Alu
chr417802819TC0.00316DCAF16-TRUEAluSzSINE,Alu
chr552389817TA0.00868ITGA2+FALSE
chr46718775GT3.33433E-09BLOC1S4+FALSE
chr3155660873AG0.00018.FALSEAluSzSINE,Alu
chr439550570TC0.00203UGDH-AS1,SMIM14+,-FALSEAluSx1SINE,Alu
chr3179117033TC0.00019GNB4-TRUEAluSzSINE,Alu
chr187573963TC0.00978HS2ST1+FALSE
chr133148736AG4.97736E-05SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr138001685TC0.00050SNIP1-TRUEAluSxSINE,Alu
chr124862649AG0.00299RCAN3+FALSE
chr1298942885AG1.31269E-05TMPO+TRUEAluScSINE,Alu
chr1118167515CT0.00852FAM46C+FALSE
chr1773885939TC0.00612TRIM65-TRUEAluJrSINE,Alu
chr9131872862CG0.00131CRAT-FALSE
chr1206581246TC0.00210SRGAP2+FALSE
chr1689623607AG0.00915SPG7+FALSE
chr132637063CT0.00071KPNA6+FALSE
chr314986133TC1.90274E-11FGD5-AS1-TRUEFLAM_CSINE,Alu
chr131732602CA0.00336SNRNP40-FALSE
chr127190857CT0.00160SFN+FALSE
chr244459528GA0.00100PPM1B+FALSE
chr145116985CT0.00318RNF220+FALSE
chr13545192CG0.00600TPRG1L+FALSE
chr1235715523AG0.00660GNG4-FALSE
chr217836722TA0.00816VSNL1+FALSE
chr126856462TG0.00201RPS6KA1+FALSE
chr1204520455TC0.00478MDM4+FALSEAluJbSINE,Alu
chr131192650TG0.00727MATN1,MATN1-AS1+,-FALSE
chr276672504AG2.97414E-06.FALSE7SKSINE,Alu
chr190497768AG4.54321E-06ZNF326+TRUE
chr2176792488GT0.00195LNPK-FALSE
chr167874859TC0.00071SERBP1-TRUEAluSxSINE,Alu
chr345960562TA2.01390E-05FYCO1-FALSE
chr119543309TC0.00769LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1589803950CT0.00698FANCI+FALSE
chr1201489569GA0.00145RPS10P7+FALSE
chr237328034TC1.98403E-05.FALSE
chr1165179818CT0.00799FRMD8+FALSE
chr35258280AG4.07938E-08EDEM1+FALSE
chr116891340TA0.00404NBPF1-FALSE
chr132742441GA2.50972E-10LCK+FALSE
chr1160967856TC0.00027F11R-TRUEAluSpSINE,Alu
chr3105295461GA9.74520E-12ALCAM+FALSE
chr2202029998TA0.00350CFLAR+FALSE(TTA)nSINE,Alu
chr339450156AG0.00985RPSA+FALSE
chr1194903795GT0.00328SESN3-FALSE
chr1179041693TC0.00845FAM20B+FALSE
chr110440643AG0.00055KIF1B+TRUEAluSxSINE,Alu
chr119543465TC0.00427LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr786816663AG0.00103DMTF1+TRUEAluJrSINE,Alu
chr116890320TC0.00045NBPF1-FALSE
chr439550084TC2.47241E-05UGDH-AS1,SMIM14+,-FALSEFLAM_CSINE,Alu
chr1167795299GA0.00764ALDH3B1+FALSE
chr417803673TC0.00206DCAF16-TRUEAluYSINE,Alu
chr348787684TC0.00494PRKAR2A-TRUEAluSpSINE,Alu
chr132661594CT0.00528TXLNA+FALSE(T)nSINE,Alu
chr3178741082AC5.87013E-06ZMAT3-FALSE
chr3121435624CT0.00063GOLGB1-FALSE
chr12133298465AG5.98085E-08PGAM5+TRUEAluSpSINE,Alu
chr129098987TA0.00180M6PR-FALSE
chr764435683TA0.00239ZNF117-FALSE
chr285546474TC0.00051TGOLN2-TRUEAluScSINE,Alu
chr43770069GC0.00018ADRA2C+FALSE
chr1236208773CT0.00722NID1-FALSE
chr1144931727GA0.00211NBPF20,PDE4DIP+,-FALSE
chr1958357268AG0.00099ZNF587B+TRUEAluSx3SINE,Alu
chr237230734CT0.00192HEATR5B-FALSE
chr1247319704TA0.00053ZNF124-FALSE
chr1277438436TC0.00187E2F7-FALSE
chr191990445AG5.21972E-05CDC7+FALSELFSINE_VertSINE,Alu
chr348556339GA6.87729E-06PFKFB4-FALSE
chr12123347005TA0.00268HIP1R+FALSE
chr3124774432TG0.00754HEG1-FALSE
chr12336210CT0.00509RER1+FALSE
chr147840953AG0.00404CMPK1+FALSE
chr5177577138TC0.00163NHP2-FALSE
chr1214524509AG0.00471PTPN14-FALSEAluSgSINE,Alu
chr2217366626AG0.00057.FALSEAluSzSINE,Alu
chr127992825GA0.00012IFI6-FALSE
chr1254634283TC0.00047CBX5-TRUEAluJrSINE,Alu
chr1179044216AG0.00277FAM20B+TRUEAluSxSINE,Alu
chr128826130AG1.79185E-05PHACTR4+TRUEAluJbSINE,Alu
chr2129023282GC0.00170HS6ST1-FALSE
chr1746024807CT0.00295PNPO+FALSE
chr153289860AG0.00041ZYG11B+TRUEFRAMSINE,Alu
chr11251844TC0.00731CPSF3L-TRUEAluSq2SINE,Alu
chr119543247TC4.83051E-05LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1148003730TC0.00636NBPF8-TRUEL1MC4SINE,Alu
chr178142901TC0.00332ZZZ3-TRUEAluSxSINE,Alu
chr1206580084CG0.00104SRGAP2+FALSE
chr153708530TC9.40494E-05LRP8-FALSE(TA)nSINE,Alu
chr1153617980AG0.00272CHTOP+FALSE
chr1325473685CT0.00580CENPJ-FALSE
chr1251324122AG0.00226METTL7A+TRUEAluSq2SINE,Alu
chr13395039GA0.00027ARHGEF16+FALSE
chr1474524774TC0.00481BBOF1,ALDH6A1+,-FALSEAluSc8SINE,Alu
chr5137891109CG0.00031HSPA9-FALSE
chr410443060TG0.00167ZNF518B-FALSE
chr1939433141AG0.00224FBXO17-FALSEAluJbSINE,Alu
chr138478446CG4.10892E-09UTP11+FALSE
chr1346700519CA0.00089LCP1-FALSE
chr1148004525CT0.00541NBPF8-FALSE
chr1100658578GA5.62742E-07DBT-FALSE
chr596129512AG0.00997ERAP1-FALSE
chrX152916233CA0.00758DUSP9+FALSE
chr21636957AT0.00589PXDN-FALSE
chr150883798TC0.00156DMRTA2-FALSE
chr272968438GT0.00147EXOC6B-FALSE
chr642045545AG0.00440TAF8+TRUEAluSzSINE,Alu
chr21652354GA0.00114PXDN-FALSE
chr123519504TA3.21384E-05HTR1D-FALSE
chr19328243AG0.00616H6PD+TRUEAluJrSINE,Alu
chr116913677TC0.00165NBPF1-FALSE
chr3195460892AG0.00057.FALSEAluSgSINE,Alu
chr1153782011CT0.00913GATAD2B-FALSE
chr4129924977CA0.00760SCLT1-FALSE
chr192865902AG0.00040.FALSEAluJrSINE,Alu
chr7137561084GA0.00194CREB3L2-FALSE(GT)nSINE,Alu

Differential Expression Gene Analysis