Dataset Overview
RBPACIN1
Knock-MethodsiRNA
RBP FamilySAP
Biosample NameHela
Tissue TypeCervix
Biosample TypeCell line
# of Control3
# of Treat3
SpeciesHuman
Data SourceGEO
Profile IDGSE81460
PlatformGPL11154
Pubmed ID27365209

ACIN1 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of ACIN1
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of ACIN1


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr457327092AG0.00091PAICS+TRUEAluSx1SINE,Alu
chr191486838GC0.00370ZNF644-FALSE
chr13545189TG0.00027TPRG1L+FALSE
chr224224134AG9.70565E-06.FALSEAluSpSINE,Alu
chr116957414CT0.00708.FALSE
chr19328242AG0.00018H6PD+TRUEAluJrSINE,Alu
chr132799512AT0.00929MARCKSL1-FALSE
chr193826609TG0.00073DR1+FALSE
chr110518875TC0.00127.FALSEAluSx1SINE,Alu
chr1145311900CT0.00011NBPF20,NBPF10+FALSE
chr110440643AG0.00055KIF1B+TRUEAluSxSINE,Alu
chr138327584TC0.00017INPP5B-TRUEAluSx3SINE,Alu
chr1154128333TA0.00204TPM3-FALSE
chr5180682611CA9.20591E-05CTC-338M12.4+FALSE
chr19160989TC0.00041.FALSEAluJbSINE,Alu
chr1200375404TG0.00030ZNF281-FALSE
chr5115166350TC0.00148ATG12-TRUEAluJrSINE,Alu
chr1173793106CT0.00772CENPL-FALSE
chr3194361676CT0.00378LSG1-FALSEMSTASINE,Alu
chr457326236AG0.00699PAICS+TRUEAluJrSINE,Alu
chr596366326GC0.00120.FALSE(TG)nSINE,Alu
chr1475202544AG3.08187E-07FCF1+TRUEAluScSINE,Alu
chr138279987TC0.00980MTF1-FALSE
chr110517313TC0.00015.FALSEAluJrSINE,Alu
chr2206986926TC0.00478.FALSEAluJrSINE,Alu
chr110707812GA0.00818CASZ1-FALSE
chr16161107AT0.00218KCNAB2+FALSE
chr116891340TA0.00022NBPF1-FALSE
chr146827871GA0.00014NSUN4+FALSE
chr1179044181AG0.00790FAM20B+TRUEAluSxSINE,Alu
chr127204436TC1.54117E-06.FALSEAluSg7SINE,Alu
chr116890130AC0.00728NBPF1-FALSE
chr2217498311TC0.00977IGFBP2+FALSE(CCG)nSINE,Alu
chr133149376AG0.00519SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr986584220GA0.00318HNRNPK-FALSE
chrX73421601TC0.00219FTX-TRUEL1MB7SINE,Alu
chr1229795330TC0.00334URB2+FALSE
chr190493918GA0.00166ZNF326+FALSE
chr2201774185TC0.00932.FALSEAluSzSINE,Alu
chr1145512951AG0.00180NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr11119533724CG0.00232NECTIN1-FALSE
chr1100488177CT0.00080SLC35A3+FALSE
chr1528502279AG0.00120HERC2-FALSE
chr722983600TC0.00025FAM126A-FALSE
chr127879798AG0.00899AHDC1-FALSEMIRbSINE,Alu
chr1774560725TC0.00476SNHG16+FALSETHE1BSINE,Alu
chr1687440117CT1.93168E-06ZCCHC14-FALSE
chr199672312TC4.30163E-05.FALSEAluJrSINE,Alu
chr1148010973CT0.00045NBPF8-FALSE
chr358304244GA0.00560RPP14+FALSEAluSzSINE,Alu
chr537289051TC0.00014.FALSEAluSpSINE,Alu
chr12101295434AG0.00695ANO4+FALSE
chr139471000GA0.00518AKIRIN1+FALSE
chr1761502460TA0.00161TANC2+FALSE
chr133149338AG0.00367SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr116935130CT0.00019NBPF1-FALSE
chr2218571345AG0.00113PEX26+TRUEAluSzSINE,Alu
chr136522603AG0.00012.FALSEAluScSINE,Alu
chr162628606AG0.00164PATJ+TRUEAluSg4SINE,Alu
chr343098969TG0.00596FAM198A+FALSEL1ME3GSINE,Alu
chr717384440AG0.00373AHR+TRUEAluSxSINE,Alu
chr1160990878CT9.31086E-06F11R-FALSE
chr572876776CA0.00875UTP15+FALSE
chr125168124GC0.00669CLIC4+FALSE
chr13753136AT0.00088CEP104-FALSE
chr3188596752AG0.00203LPP+FALSE
chr237331627TC0.00030.FALSEAluJbSINE,Alu
chr2025428750AG3.17139E-06GINS1+TRUEAluJbSINE,Alu
chr1179042555AG0.00922FAM20B+TRUEAluSx1SINE,Alu
chr126755303AG0.00129LIN28A+TRUEAluSx1SINE,Alu
chr811701343TC0.00280CTSB-TRUEAluSx1SINE,Alu
chr1144823139GA0.00941NBPF20,NBPF9+FALSE
chr344790773TC0.00122KIAA1143-TRUEAluYSINE,Alu
chr163207362AT1.09222E-05.FALSE
chr1256532056GC0.00743ESYT1+FALSE
chr1145513112AG0.00080NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chrX77083952TC0.00045MAGT1-TRUEAluSzSINE,Alu
chr5149829071TC0.00407RPS14-FALSE
chr255516937GT0.00250CCDC88A-FALSE(GA)nSINE,Alu
chr1114940228CT0.00252TRIM33-FALSE(T)nSINE,Alu
chr3115528809TG0.00087LSAMP-FALSE
chr2242173247GA0.00345HDLBP-FALSE
chr116944809GC0.00072CROCCP2-FALSE
chr16694574GA0.00983THAP3,DNAJC11+,-FALSE
chr170718269AG0.00234.FALSE
chr1153920564AG0.00747CRTC2-FALSE
chr269688917TC0.00254AAK1-TRUEAluSq2SINE,Alu
chr4153898736AG0.00574FHDC1+FALSEAluJbSINE,Alu
chr1760522252GA0.00187METTL2A+FALSE
chr143309548GA0.00764ERMAP+FALSE
chr2128601426TC0.00034.FALSEAluJrSINE,Alu
chr199164434GA0.00911SNX7+FALSE
chr552251222GT0.00808.FALSE(GATA)nSINE,Alu
chr111083183GT0.00342TARDBP+FALSE
chr128422194AC0.00018.FALSE
chr11017747AG0.00142C1orf159-FALSE
chr126608016GA1.44245E-06.FALSE
chr238522138GT8.89010E-06ATL2-FALSE
chr133148721AG0.00359SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr111979814GA0.00697KIAA2013-FALSE
chr642855972AG0.00182RPL7L1+TRUEAluSzSINE,Alu
chr137948912CT0.00084ZC3H12A+FALSE
chr1145281656AT0.00839NBPF20,NOTCH2NL+FALSE
chr1120166681GA0.00241ZNF697-FALSE
chr12133298938AG0.00034PGAM5+TRUEAluSgSINE,Alu
chr228639641CG0.00431.FALSE
chr16583383TC0.00305NOL9-TRUEAluSqSINE,Alu
chr111347150CA0.00366UBIAD1+FALSE
chr1942753034AG0.00883ERF-FALSE
chr144088547CA0.00018PTPRF+FALSEA-richSINE,Alu
chr187328397AT0.00252SEP15-FALSE
chr128826085AG0.00153PHACTR4+TRUEAluJbSINE,Alu
chr126308882AG3.99595E-05PAFAH2-FALSE
chr12125269489CT0.00817SCARB1-FALSE
chr16282298TC2.81673E-05ICMT-TRUEAluSzSINE,Alu
chr110520588TC0.00341.FALSEAluSc8SINE,Alu
chr848889705AG0.00339MCM4+TRUEAluSx3SINE,Alu
chr2128952006AG0.00701UGGT1+TRUEAluSx1SINE,Alu
chr76505901TC1.53488E-09KDELR2-FALSE
chr1109476363AG0.00172GPSM2,CLCC1+,-FALSE
chr127205224TC0.00353.FALSEAluScSINE,Alu
chr110240685CT0.00422UBE4B+FALSE
chr165298625GA0.00761RAVER2+FALSEX12_DNASINE,Alu
chr11325721CT0.00471CCNL2-FALSE
chr1214524566TC0.00040PTPN14-TRUEAluSgSINE,Alu
chr1182360928AC0.00635GLUL-FALSE
chr1228881190TG0.00043RHOU+FALSE
chr5156904831TC0.00351ADAM19-TRUEMER92BSINE,Alu
chr1016554733GT0.00706PTER+FALSE
chr13729182TC0.00300CEP104-TRUEAluSx3SINE,Alu
chr744047240GA0.00588POLR2J4,SPDYE1+,-FALSE
chr348787684TC0.00813PRKAR2A-TRUEAluSpSINE,Alu
chr349397323TC0.00000RHOA-TRUE
chr12123253789AG0.00037DENR+TRUE(AT)nSINE,Alu
chr7143003517TA0.00251CASP2+FALSEAluYSINE,Alu
chr1610624957TC0.00034EMP2-TRUEAluSx3SINE,Alu
chr220818330TC0.00228HS1BP3-TRUE
chr1145441838CG0.00790NBPF20,NBPF10,TXNIP+FALSE
chr3195635455TC0.00158TNK2-FALSE
chrX77084001TC1.05736E-07MAGT1-TRUEAluSzSINE,Alu
chr119199221CT0.00392ALDH4A1-FALSE
chr138174583AC0.00644CDCA8+FALSE
chr146075168CA0.00155NASP+FALSEA-richSINE,Alu
chr366430372TA0.00300LRIG1-FALSE
chr195392593CT0.00173CNN3-FALSE(GGCGCG)nSINE,Alu
chr388104073GC0.00887CGGBP1-FALSE
chr127876482CA0.00687AHDC1-FALSE
chr13545194CG0.00254TPRG1L+FALSE
chr1096090672AG0.00018.FALSE
chr3141667149TC0.00273TFDP2-TRUEAluSxSINE,Alu
chr116892918TC0.00128NBPF1-FALSE
chr116889044TA0.00256NBPF1-FALSE
chr12120898728AG0.00947GATC+TRUEAluYSINE,Alu
chr12133298025AG6.18330E-06PGAM5+TRUEAluJoSINE,Alu
chr210050947TC0.00273TAF1B+FALSE
chr136388202TG0.00707AGO1+FALSE(GCCT)nSINE,Alu
chr19664845CT1.14015E-08TMEM201+FALSE
chr1207942427AG0.00822CD46+TRUEAluSg4SINE,Alu
chr157002773AG0.00162PLPP3-FALSE
chr1789232CT0.00335LINC01128+FALSE
chr2131906031CT0.00374PLEKHB2+FALSE
chr642856039AG1.34846E-05RPL7L1+TRUEAluSzSINE,Alu
chr5118174668TC1.32199E-05DTWD2-TRUEAluYSINE,Alu
chr4128756628AG0.00011.FALSEAluSxSINE,Alu
chr1150479901CT0.00228TARS2+FALSEAluSc8SINE,Alu
chr9136209396CT0.00126MED22-FALSE
chrX3526658AT0.00152PRKX-FALSE(AC)nSINE,Alu
chr1623582262TG0.00101UBFD1+FALSE
chr320025679AG0.00292RAB5A,PP2D1+,-FALSE
chr1100489992AG0.00938SLC35A3+TRUEAluSgSINE,Alu
chr1253936878GT0.00036ATF7-FALSE
chr11571802GA0.00067CDK11B-FALSE
chr136067858GA0.00293PSMB2-FALSEAluSzSINE,Alu
chr116133914TC0.00156UQCRHL-TRUE
chr11152309AT0.00035SDF4-FALSE
chr119633555GA0.00219AKR7A2-FALSE
chr146075779AG0.00640NASP+TRUEAluSx4SINE,Alu
chr553841241TA0.00372SNX18+FALSE
chr2046284868AT0.00681NCOA3+FALSE
chr274375276AC0.00328BOLA3-AS1+FALSE
chr1204521631AG0.00024MDM4+TRUEAluSgSINE,Alu
chr4109733172TC0.00480COL25A1-FALSE
chr187573963TC0.00978HS2ST1+FALSE
chr151822219GA0.00017EPS15-FALSE
chr1538645589AC0.00445SPRED1+FALSE
chr1203277245GA0.00115BTG2+FALSE
chr4140394600GA0.00950RAB33B+FALSE
chr2217366866AG0.00247.FALSEAluSz6SINE,Alu
chr5137087812AC0.00607HNRNPA0-FALSE
chr1184661773GT0.00082EDEM3-FALSE
chr4165998958TC0.00021TMEM192-TRUEAluSINE,Alu
chr116841972GA1.76809E-05.FALSEMER41ESINE,Alu
chr1224927968GA0.00695CNIH3+FALSE
chr3101576175TC0.00246NFKBIZ+FALSE
chr989626918AG0.00048LOC440173-FALSE
chr119543309TC0.00769LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1583685469TC0.00976BTBD1-FALSE
chr1100654813TC0.00352DBT-TRUEAluSzSINE,Alu
chr255516938AT0.00265CCDC88A-FALSE(GA)nSINE,Alu
chr18691521TC0.00150ENOSF1-TRUEAluJrSINE,Alu
chr564964627TC2.01273E-05SGTB-TRUEAluSx1SINE,Alu
chr11337734CT3.46713E-05MRPL20-FALSE
chr1142660072TG0.00773.FALSE
chr1176176230GA0.00091RFWD2-FALSE
chr133149266AG0.00292SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr133148210AG0.00342SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr111782935AG0.00067.FALSEAluSxSINE,Alu
chr3195412715TC0.00837SDHAP2+FALSE
chr220401855GA0.00107SDC1-FALSE
chr285132773CA5.10736E-05TMSB10+FALSE
chr147142539TA0.00066EFCAB14-AS1,EFCAB14+,-FALSE
chr2128950515AG0.00052UGGT1+TRUEAluScSINE,Alu
chr16282324TC0.00013ICMT-TRUEAluSzSINE,Alu
chr239212565TG0.00662SOS1-FALSE
chr729963082GA0.00118SCRN1-FALSE
chr1149816373GA0.00364.FALSE(A)nSINE,Alu
chr237327670TC5.08697E-08.FALSE
chr842043493GA0.00045PLAT-FALSEMLT2C1SINE,Alu
chr177257878AG0.00027KCTD11+FALSE
chr145976259AC0.00015MMACHC+FALSE
chr1570178GA0.00787.FALSE
chr111780004GT0.00216DRAXIN+FALSE
chr12100452832CT0.00386UHRF1BP1L-FALSE
chr310192642AG0.00714VHL+TRUEAluSx1SINE,Alu
chr1220231455TC0.00274RNU5F-1,BPNT1+,-FALSEAluYSINE,Alu
chr165901227AT0.00914LEPR,LEPROT+FALSEAluYh3SINE,Alu
chr2217366196TA0.00207.FALSE
chr315113885TC0.00094RBSN-TRUEAluSz6SINE,Alu
chr1689623619AG0.00275SPG7+FALSE
chr146829013AG0.00360NSUN4+FALSE
chr344791569TC0.00685KIAA1143-TRUEAluJrSINE,Alu
chr1118167515CT2.81283E-05FAM46C+FALSE
chr224223251AG0.00489UBXN2A+TRUEAluScSINE,Alu
chr16283434TC4.87712E-06ICMT-TRUEAluSx3SINE,Alu
chr136067760TC0.00362PSMB2-TRUEAluSzSINE,Alu
chr4248996AG0.00123ZNF876P+TRUEAluYk3SINE,Alu
chr140974799TC0.00038EXO5+FALSE
chr342266346AG0.00824TRAK1+FALSE
chr765888510TC0.00519.FALSE
chr128826150AG0.00047PHACTR4+TRUEAluJbSINE,Alu
chr7299881AG1.23967E-06FAM20C+FALSE
chr2191556844TA0.00261NAB1+FALSE
chr153289759AG0.00329ZYG11B+TRUEAluSzSINE,Alu
chr116933135GT0.00363NBPF1-FALSEL1MC2SINE,Alu
chr2113334241AG0.00388POLR1B+TRUE
chr1073994170AG0.00218ANAPC16+TRUEAluJrSINE,Alu
chr116889423GC0.00459NBPF1-FALSEL1MC4SINE,Alu
chr11597403CT0.00912CDK11B,SLC35E2B-FALSE
chr111347155CT0.00366UBIAD1+FALSE
chr1160967855TC0.00042F11R-TRUEAluSpSINE,Alu
chr146093161CT0.00628GPBP1L1-FALSE
chr117928TA0.00956WASH7P-FALSE
chr841401497AG0.00051LOC102723729,GINS4+,-FALSEAluSq2SINE,Alu
chr153679610GA0.00073CPT2+FALSEAluSzSINE,Alu
chr348787715TC0.00863PRKAR2A-TRUEAluSpSINE,Alu
chr269690885TC0.00970AAK1-TRUEAluSx3SINE,Alu
chr310192672GA5.82875E-07VHL+FALSEAluSx1SINE,Alu
chr11768386TC0.00208PDDC1-TRUEAluScSINE,Alu
chrX77083672TC2.97227E-07MAGT1-TRUEAluSz6SINE,Alu
chr5130540369CA0.00196LYRM7+FALSETigger4aSINE,Alu
chr398518156TA7.17121E-05DCBLD2-FALSE
chr1541590972AG2.40282E-05OIP5-AS1+TRUEAluSx1SINE,Alu
chr299812429AG0.00504MRPL30+TRUEAluSxSINE,Alu
chr5130537933AG0.00084LYRM7+TRUEAluSpSINE,Alu
chr187573331TC0.00699HS2ST1+FALSE(AT)nSINE,Alu
chr366430375TA0.00091LRIG1-FALSE
chr2223807817AC0.00991ACSL3+FALSE(A)nSINE,Alu
chr237331578TC0.00675.FALSEAluJbSINE,Alu
chr110042987AG0.00261NMNAT1+TRUEAluScSINE,Alu
chr119771768AG0.00891SWAP70+TRUEAluSx1SINE,Alu
chr8145139727CT0.00458GPAA1+FALSE
chr147685593AC0.00891TAL1-FALSE(CCACCC)nSINE,Alu
chr248605828TA0.00650FOXN2+FALSE(T)nSINE,Alu
chr1230415244TC0.00780GALNT2+FALSE
chr11252513TC0.00013CPSF3L-TRUEAluSpSINE,Alu
chr16308456GA0.00169GPR153-FALSE
chr16283260TC0.00125ICMT-TRUEAluSx3SINE,Alu
chr125894469AT0.00326LDLRAP1+FALSEMIRbSINE,Alu
chr1165404869GT1.77375E-05PCNX3+FALSE
chr116893686GC0.00171NBPF1-FALSE
chr116890672GA0.00142NBPF1-FALSE
chr626096636AG0.00531.FALSEAluSgSINE,Alu
chr413604034TC3.45500E-11BOD1L1-FALSE
chr1179326847AG0.00577SOAT1+TRUEAluJoSINE,Alu
chr1109240643AC0.00608PRPF38B+FALSE
chr123636028TA0.00029HNRNPR-FALSE
chr1144594232CT2.29859E-05NBPF20+FALSE
chr1100489297GC0.00669SLC35A3+FALSEAluScSINE,Alu
chr3140695493CA0.00559SLC25A36+FALSE
chr16159719CT4.79205E-09KCNAB2+FALSE
chr110520702TC0.00883DFFA-TRUEAluSc8SINE,Alu
chr1017362784AG0.00261ST8SIA6-FALSE
chr47762356GA3.36293E-10AFAP1,AFAP1-AS1+,-FALSE
chr4140310370TC0.00335NAA15+FALSE(T)nSINE,Alu

Differential Expression Gene Analysis