RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	65297861	T	C	0.00895	RAVER2	+	FALSE
chr1	179044239	A	G	0.00143	FAM20B	+	TRUE	AluSx	SINE,Alu
chr13	20224387	A	G	0.00959	MPHOSPH8	+	FALSE
chr7	112579815	G	T	0.00997	BMT2	-	FALSE	(CGC)n	SINE,Alu
chr1	1255401	G	T	0.00216	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr7	6500726	A	T	0.00560	KDELR2	-	FALSE
chr1	74672474	G	A	0.00292	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chr6	31323203	A	G	2.54151E-09		.	FALSE
chr5	56177851	A	T	0.00796	MAP3K1	+	FALSE	(CAA)n	SINE,Alu
chr1	36067760	T	C	0.00258	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	143464946	T	C	0.00109		.	FALSE
chr2	24227417	A	G	0.00831		.	FALSE	AluSc	SINE,Alu
chr1	26608015	T	A	3.80922E-07		.	FALSE
chr1	24134721	T	C	0.00113	HMGCL	-	FALSE
chr4	107246251	G	T	3.16074E-09	AIMP1	+	FALSE
chr1	28662057	A	G	3.94650E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr8	27661063	T	A	0.00138	ESCO2	+	FALSE	(AC)n	SINE,Alu
chr1	16912029	C	G	0.00268	NBPF1	-	FALSE
chr1	9643054	A	G	5.80579E-05		.	FALSE	AluSx	SINE,Alu
chr2	86251151	T	C	0.00882		.	FALSE	AluSx	SINE,Alu
chr3	10004768	G	A	3.85967E-05	EMC3	-	FALSE	Tigger14a	SINE,Alu
chr1	32372358	C	T	0.00303	PTP4A2	-	FALSE	(CA)n	SINE,Alu
chr1	6282400	T	C	7.25534E-07	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	20238572	A	T	0.00950	OTUD3	+	FALSE
chr7	2274221	T	C	0.00579	MRM2	-	TRUE	AluJr	SINE,Alu
chr1	179876988	C	G	0.00045	TOR1AIP1	+	FALSE
chr2	238678002	C	G	0.00711	LRRFIP1	+	FALSE
chr1	9163402	T	C	0.00014		.	FALSE	AluSp	SINE,Alu
chr3	15114385	T	C	0.00146	RBSN	-	TRUE	AluY	SINE,Alu
chr1	117648269	G	A	0.00988		.	FALSE	AluSz6	SINE,Alu
chr3	51738256	A	G	0.00312	TEX264	+	FALSE
chr16	10624997	T	C	1.19407E-05	EMP2	-	TRUE	AluSx3	SINE,Alu
chr8	38829839	A	G	0.00184	PLEKHA2	+	TRUE	AluJr4	SINE,Alu
chr1	10520702	T	C	0.00883	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	16890644	C	T	0.00533	NBPF1	-	FALSE
chr7	116340269	C	T	0.00313	MET	+	FALSE
chr1	28826190	A	G	0.00233	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	1469782	G	C	0.00544	ATAD3A	+	FALSE
chr1	52882970	A	G	0.00533	PRPF38A	+	FALSE
chr19	42375549	A	G	4.56329E-05		.	FALSE	AluSx	SINE,Alu
chr4	73923043	T	C	0.00236	COX18	-	TRUE	AluSz	SINE,Alu
chr4	95586224	A	G	0.00053	PDLIM5	+	FALSE
chr1	23884597	G	A	0.00269	ID3	-	FALSE
chr1	26611197	C	T	0.00814	UBXN11	-	FALSE
chr7	937828	G	A	0.00605	ADAP1	-	FALSE
chr1	6583593	T	C	0.00088	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	28825465	A	G	0.00496	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	114306374	G	A	5.13313E-06	RSBN1	-	FALSE
chr1	53684924	A	G	0.00347	C1orf123	-	FALSE	L1MA5A	SINE,Alu
chr1	109479978	G	T	0.00057	CLCC1	-	FALSE
chr1	1647902	A	T	0.00191	CDK11B,CDK11A	-	FALSE
chr8	42876058	A	G	0.00029	HOOK3	+	TRUE	AluSq2	SINE,Alu
chr2	160084473	A	C	0.00101	TANC1	+	FALSE
chr1	11783889	A	G	0.00746		.	FALSE	AluSq	SINE,Alu
chr4	177252238	A	G	3.85736E-09	SPCS3	+	TRUE
chr2	61276758	A	G	0.00924	PEX13	+	TRUE	AluSp	SINE,Alu
chr6	72012435	A	G	0.00723	OGFRL1	+	FALSE	AluSg	SINE,Alu
chr3	119212009	G	A	0.00241	POGLUT1	+	FALSE
chr2	171850174	T	G	3.41223E-05	TLK1	-	FALSE
chr5	134061340	T	A	0.00493	SEC24A	+	FALSE
chr1	16133912	T	C	0.00126	UQCRHL	-	TRUE
chr1	45976261	T	A	0.00018	MMACHC	+	FALSE
chr5	175802154	C	T	0.00883		.	FALSE	(CATC)n	SINE,Alu
chr3	127790249	A	G	0.00057	RUVBL1,SEC61A1	+,-	FALSE
chr1	28150601	A	T	0.00382	STX12	+	FALSE
chr5	125962086	A	G	0.00231	PHAX	+	TRUE	AluSz	SINE,Alu
chr5	52389811	T	G	0.00561	ITGA2	+	FALSE
chr1	16891340	T	A	0.00724	NBPF1	-	FALSE
chr2	9629298	G	C	0.00590	ADAM17	-	FALSE	(TGT)n	SINE,Alu
chr6	42856959	A	G	6.63353E-07	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	193222534	G	T	0.00504	CDC73	+	FALSE	(TGT)n	SINE,Alu
chr1	155734530	T	C	0.00214	GON4L	-	TRUE
chr2	37328034	T	C	0.00380		.	FALSE
chr1	152187945	C	T	9.69718E-05	HRNR	-	FALSE	(GCCAGA)n	SINE,Alu
chr10	24873171	G	T	0.00329	ARHGAP21	-	FALSE
chr1	16889339	C	T	0.00129	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr1	65899366	A	C	0.00593	LEPR,LEPROT	+	FALSE
chr7	143003517	T	A	0.00251	CASP2	+	FALSE	AluY	SINE,Alu
chr14	74526952	T	C	0.00019	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr2	38971644	T	G	0.00239	SRSF7	-	FALSE
chr20	309186	A	G	0.00665	SOX12	+	FALSE	A-rich	SINE,Alu
chr6	13788297	T	C	0.00077	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	33149486	A	G	0.00528	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr7	156762446	G	T	0.00162	NOM1	+	FALSE
chr1	109239334	A	T	0.00035	PRPF38B	+	FALSE
chr2	164466037	A	T	0.00090	FIGN	-	FALSE
chr1	114940228	C	T	0.00559	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	3806074	G	A	0.00809	C1orf174	-	FALSE	AluSp	SINE,Alu
chr1	32661615	A	T	0.00033	TXLNA	+	FALSE
chr4	7762313	C	G	5.86540E-10	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	145284136	G	A	0.00072	NBPF20,NOTCH2NL	+	FALSE	(TG)n	SINE,Alu
chr10	28971536	A	T	0.00815	BAMBI	+	FALSE
chr2	219134117	C	T	0.00357	AAMP	-	FALSE
chr1	118502087	C	T	0.00585	WDR3,SPAG17	+,-	FALSE
chr2	113334241	A	G	0.00388	POLR1B	+	TRUE
chr1	110170896	T	C	0.00140	AMPD2	+	FALSE
chr1	28824065	C	T	0.00345	PHACTR4	+	FALSE
chr8	104312341	A	G	0.00692	FZD6	+	FALSE
chr1	120612006	G	A	0.00602	NOTCH2	-	FALSE
chr6	42856156	A	G	0.00105	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr15	65442602	T	C	8.94083E-05	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	156613632	G	A	0.00187	BCAN	+	FALSE
chr16	48386442	A	G	0.00824	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr5	137842895	A	T	0.00038	ETF1	-	FALSE
chr13	39598616	G	A	2.18804E-06	PROSER1	-	FALSE
chr4	10076658	T	C	6.66134E-16	WDR1	-	FALSE
chr1	33148706	A	G	0.00087	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	145512014	A	G	0.00144	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr12	124146077	A	G	1.08379E-05	GTF2H3	+	TRUE	AluSx4	SINE,Alu
chr10	75009591	T	C	8.39163E-08	DNAJC9-AS1,MRPS16	+,-	FALSE	AluSc	SINE,Alu
chr1	27992799	T	A	0.00014	IFI6	-	FALSE	FAM	SINE,Alu
chr1	25655853	A	G	0.00147	RSRP1,RHD	+,-	FALSE	AluSz	SINE,Alu
chr16	10625320	T	C	0.00923	EMP2	-	TRUE	AluSx	SINE,Alu
chr1	19543456	T	C	0.00451	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	16889413	T	C	1.64789E-05	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	53291434	A	G	0.00318	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	67874859	T	C	0.00209	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	16893841	C	T	0.00272	NBPF1	-	FALSE
chr1	114938247	G	A	0.00197	TRIM33	-	FALSE
chr1	94351065	A	T	0.00142	GCLM	-	FALSE
chr1	165631670	T	G	0.00197	ALDH9A1	-	FALSE
chr1	37949806	G	A	2.03247E-05	ZC3H12A	+	FALSE
chr1	9324451	C	T	0.00266	H6PD	+	FALSE
chr8	41399912	C	A	0.00056	LOC102723729,GINS4	+,-	FALSE	AluSx3	SINE,Alu
chr1	145511988	A	G	0.00900	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr12	123346997	G	C	0.00275	HIP1R	+	FALSE
chr1	144822066	A	G	0.00020	NBPF20,NBPF9	+	FALSE
chr1	120839683	G	A	0.00875	FAM72B	+	FALSE
chr4	129796173	G	T	1.40481E-05	JADE1	+	FALSE
chr1	16133987	T	C	0.00830	UQCRHL	-	FALSE
chr8	128944725	G	C	0.00491	PVT1	+	FALSE
chr7	74169234	G	T	8.95897E-05	GTF2I	+	FALSE
chr1	109475629	A	G	0.00744	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	1721936	G	A	0.00731	GNB1	-	FALSE
chr5	130538043	A	G	0.00713	LYRM7	+	TRUE	AluSp	SINE,Alu
chr4	128757415	A	G	0.00367		.	FALSE	AluY	SINE,Alu
chr3	48787684	T	C	0.00813	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr8	98739208	A	G	0.00686	MTDH	+	TRUE	AluSg4	SINE,Alu
chr1	184661942	T	G	0.00343	EDEM3	-	FALSE
chr4	17803009	T	C	0.00062	DCAF16	-	TRUE	AluSz	SINE,Alu
chr4	10099340	T	C	0.00000	WDR1	-	FALSE
chr5	34189578	T	C	0.00378		.	FALSE
chr1	36642420	T	C	0.00188	MAP7D1	+	FALSE
chr3	121435624	C	T	0.00063	GOLGB1	-	FALSE
chr1	144931101	G	A	0.00358	NBPF20,PDE4DIP	+,-	FALSE
chr1	67874859	T	C	0.00374	SERBP1	-	TRUE	AluSx	SINE,Alu
chr17	79529443	T	C	0.00153	NPLOC4	-	TRUE	AluSx1	SINE,Alu
chr1	145284175	G	C	0.00562	NBPF20,NOTCH2NL	+	FALSE
chr1	28662213	A	G	0.00013	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	19543457	T	C	0.00362	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	115299506	A	C	0.00076	CSDE1	-	FALSE
chr3	150345451	A	G	2.37481E-05	SELT	+	TRUE
chr3	191110320	G	A	0.00419	CCDC50	+	FALSE
chr1	16894514	C	T	0.00270	NBPF1	-	FALSE
chr3	158320703	C	A	0.00841	MLF1	+	FALSE
chr2	233744021	G	A	0.00460	NGEF	-	FALSE
chr2	172178588	T	C	0.00248	METTL8	-	TRUE	AluSx3	SINE,Alu
chr1	120162635	A	T	0.00203	ZNF697	-	FALSE
chr1	31732603	A	C	0.00148	SNRNP40	-	FALSE
chr1	6283260	T	C	0.00402	ICMT	-	TRUE	AluSx3	SINE,Alu
chr2	85772406	G	A	0.00278	GGCX	-	FALSE
chr1	59122059	G	A	0.00476	MYSM1	-	FALSE
chr2	178406769	A	T	0.00416	AGPS	+	FALSE
chr4	190864378	T	G	0.00247	FRG1	+	FALSE	GA-rich	SINE,Alu
chr4	17803616	T	C	1.55934E-06	DCAF16	-	TRUE	AluY	SINE,Alu
chr1	138266	C	T	0.00802	LOC729737	-	FALSE
chr10	45499895	G	A	0.00255	ZNF22	+	FALSE
chr10	88951001	G	A	0.00033	FAM35A	+	FALSE
chr2	37331116	T	C	0.00481		.	FALSE	AluSx1	SINE,Alu
chr1	155030557	A	C	0.00883	LOC100505666,ADAM15	+,-	FALSE
chr1	144828784	A	G	0.00053	NBPF20,NBPF9	+	FALSE
chr1	21544601	C	T	0.00196	ECE1	-	FALSE
chr7	137561076	A	G	0.00488	CREB3L2	-	FALSE
chr1	35644504	A	T	0.00242	SFPQ	-	FALSE
chr1	36770621	G	T	0.00424	THRAP3	+	FALSE	(T)n	SINE,Alu
chr9	125866691	A	C	0.00177	RABGAP1	+	FALSE
chr4	6644391	G	A	0.00000	MRFAP1	+	FALSE
chr1	100615003	G	A	0.00046	TRMT13,LRRC39	+,-	FALSE
chr11	118875356	A	G	0.00051	CCDC84	+	TRUE
chr17	57279273	A	G	0.00513	PRR11	+	TRUE	AluSq2	SINE,Alu
chr2	11323106	G	T	0.00860	ROCK2	-	FALSE	(TA)n	SINE,Alu
chr1	28836912	A	G	3.63020E-05	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr5	139931630	A	T	0.00052	SRA1	-	FALSE
chr4	57326262	A	G	2.33397E-05	PAICS	+	TRUE	AluJr	SINE,Alu
chr2	202031506	A	G	0.00508	CFLAR	+	TRUE	SVA_A	SINE,Alu
chr1	202993056	T	C	0.00046	TMEM183A	+	FALSE
chr5	176916516	C	T	0.00093	PDLIM7	-	FALSE
chr1	19543353	T	C	0.00081	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr3	141879765	T	C	0.00212	GK5	-	TRUE	AluJr	SINE,Alu
chr2	160624383	A	T	0.00018	MARCH7	+	FALSE
chr1	19545142	A	G	0.00071	LOC101927895,EMC1	+,-	FALSE
chr3	45722381	A	G	0.00996	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	186332550	A	T	0.00328	TPR	-	FALSE
chr1	186946912	G	A	0.00414	PLA2G4A	+	FALSE
chr3	195242996	C	A	0.00136	PPP1R2	-	FALSE
chr19	16661431	T	C	0.00017	SLC35E1	-	TRUE	AluSz	SINE,Alu
chr1	54571374	A	G	0.00280	TCEANC2	+	TRUE	AluSc	SINE,Alu
chr15	91044385	G	T	0.00440	IQGAP1	+	FALSE
chr2	178406762	G	T	0.00708	AGPS	+	FALSE
chr6	44417142	A	G	0.00144	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr1	16933625	A	G	0.00536	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	53291344	A	G	0.00088	ZYG11B	+	FALSE	(A)n	SINE,Alu
chr1	33149496	A	G	0.00469	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	10517276	T	C	0.00604		.	FALSE	AluJr	SINE,Alu

RBP	KHDRBS1
Knock-Method	siRNA
RBP Family	KH_1
Biosample Name	U2OS
Tissue Type	Bone
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	GEO
Profile ID	GSE104856
Platform	GPL18573
Pubmed ID	29386330

KHDRBS1 - Target Gene Network