Dataset Overview
RBP
KHDRBS1
Knock-Method
siRNA
RBP Family
KH_1
Biosample Name
U2OS
Tissue Type
Bone
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
GEO
Profile ID
GSE104856
Platform
GPL18573
Pubmed ID
29386330
KHDRBS1 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of KHDRBS1
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
AC005606.14
4.32
1.67
-1.35890
0.01720
1.00000
AC009133.14
0.55
1.19
1.07335
0.04528
1.00000
AC022431.1
2.48
5.65
1.15540
0.04011
1.00000
ARHGEF4
0.86
0.61
-1.43325
0.00426
1.00000
ARL6IP1
102.26
63.4
-0.67557
0.01322
1.00000
BLOC1S5-TXNDC5
8.47
2.98
-1.51134
2.28516E-06
0.00499
BTBD1
33.78
20.73
-0.90003
0.00382
1.00000
C4orf26
6.78
10.83
0.81350
0.02864
1.00000
CA5B
2.67
1.44
-0.90672
0.04505
1.00000
CLEC7A
1.92
0.74
-1.11836
0.04469
1.00000
Showing 1 to 10 of 87 entries
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Function Analysis of Target Genes of KHDRBS1
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABHD14B
52005475_52005908_52003958_52004200_52007980_52008047
0.00725
0.591
DataSet_02_23
View details
ABRAXAS1
84405144_84405319_84403306_84403397_84406138_84406256
0.00010
-0.45
DataSet_02_23
View details
AC006453.2
91842945_91843023_91816691_91816979_91843393_91843402
0.00494
-0.267
DataSet_02_23
View details
AC006504.5
28288661_28289084_28284402_28284558_28296512_28296680
0.00030
0.439
DataSet_02_23
View details
AC009779.3
56110716_56110789_56110373_56110501_56112874_56113007
0.00040
0.419
DataSet_02_23
View details
AC098487.1
103340420_103340516_103339873_103340145_103340853_103340951
0.00175
0.25
DataSet_02_23
View details
ACVR1
158683039_158683158_158674896_158675071_158732307_158732352
0.00535
0.322
DataSet_02_23
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ADAMTSL5
1511623_1511726_1510843_1510916_1512961_1513018
0.00000
-0.775
DataSet_02_23
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ADD2
70940197_70940316_70933357_70933574_70995017_70995309
0.00272
-0.416
DataSet_02_23
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ADD3
111865757_111865811_111860382_111860606_111872534_111872652
0.00000
-1.0
DataSet_02_23
View details
Showing 1 to 10 of 440 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABI1
27044583_27044670_27047990_27048167_27040526_27040712
0.00002
0.75
DataSet_02_23
View details
ANXA2
60688571_60688626_60689456_60689537_60678226_60678285
0.00339
0.371
DataSet_02_23
View details
ARIH2
48960180_48960244_48982568_48982614_48956253_48956431
0.00244
0.25
DataSet_02_23
View details
ARIH2
48960180_48960244_48999044_48999112_48956268_48956431
0.00000
0.875
DataSet_02_23
View details
COMMD6
76104249_76104402_76104446_76104541_76100571_76100775
0.00003
0.8
DataSet_02_23
View details
COPZ1
54737008_54737100_54739243_54739299_54735989_54736071
0.00339
0.292
DataSet_02_23
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DMKN
35997027_35997087_35998359_35998413_35996840_35996888
0.00098
0.375
DataSet_02_23
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EPB41
29424318_29424447_29435847_29435949_29391493_29391670
0.00028
-0.541
DataSet_02_23
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LETMD1
51445874_51445990_51449926_51450028_51442816_51442968
0.00182
-0.416
DataSet_02_23
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LUC7L3
48814647_48814840_48815501_48815560_48814320_48814387
0.00104
-0.534
DataSet_02_23
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Showing 1 to 10 of 21 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ANXA2
60688349_60688626_60688478_60688626_60678226_60678285
0.00194
-0.412
DataSet_02_23
View details
ASCC2
30230430_30230539_30230477_30230539_30228233_30228331
0.00056
-0.5
DataSet_02_23
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ATP13A2
17331186_17331316_17331201_17331316_17330826_17330903
0.00398
0.393
DataSet_02_23
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C20orf27
3740653_3740833_3740728_3740833_3739182_3739325
0.00010
0.5
DataSet_02_23
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CEP95
62527043_62527140_62527043_62527136_62528007_62528140
0.00620
-0.254
DataSet_02_23
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CFL2
35182459_35182767_35182602_35182767_35182265_35182342
0.00117
0.18
DataSet_02_23
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CFL2
35182459_35182767_35182713_35182767_35182265_35182342
0.00101
0.693
DataSet_02_23
View details
CNN2
1032557_1032695_1032557_1032662_1036128_1036245
0.00100
0.201
DataSet_02_23
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COX7A2
75949992_75950101_75950016_75950101_75947502_75947704
0.00235
0.402
DataSet_02_23
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CXorf40B
149105631_149105698_149105650_149105698_149102222_149102355
0.00650
-0.536
DataSet_02_23
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Showing 1 to 10 of 47 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AARSD1
41108420_41108577_41108420_41108521_41109154_41109212
0.00218
0.5
DataSet_02_23
View details
ALAS1
52233225_52233456_52233236_52233456_52232687_52232864
0.00142
-0.207
DataSet_02_23
View details
ALPK1
113298833_113299054_113298885_113299054_113236956_113237008
0.00204
0.166
DataSet_02_23
View details
ASNSD1
190530766_190532322_190531921_190532322_190530101_190530177
0.00043
0.584
DataSet_02_23
View details
BAP1
52440268_52440392_52440268_52440338_52440844_52440923
0.00891
-0.165
DataSet_02_23
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CACNB3
49220027_49220301_49220202_49220301_49219442_49219552
0.00154
0.625
DataSet_02_23
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CAMTA2
4884972_4885126_4884972_4885037_4886051_4886187
0.00027
-0.834
DataSet_02_23
View details
CCT3
156294762_156294880_156294762_156294877_156303337_156303434
0.00279
-0.38
DataSet_02_23
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CDCA3
6958728_6959022_6958728_6958947_6959630_6959760
0.00000
-0.557
DataSet_02_23
View details
CDK10
89760976_89761196_89761072_89761196_89760580_89760640
0.00006
0.5
DataSet_02_23
View details
Showing 1 to 10 of 51 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AP1G2
24032792_24033065_24032792_24032847_24032924_24033065
0.00000
-1.0
DataSet_02_23
View details
BIRC5
76212046_76212862_76212046_76212115_76212744_76212862
0.00332
-0.105
DataSet_02_23
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C1orf174
3807132_3809560_3807132_3807621_3809446_3809560
0.00307
-0.137
DataSet_02_23
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CARS
3023199_3023830_3023199_3023404_3023770_3023830
0.00227
-0.218
DataSet_02_23
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CCDC88A
55522732_55523192_55522732_55522863_55523085_55523192
0.00644
0.405
DataSet_02_23
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CD46
207940357_207943707_207940357_207940540_207943665_207943707
0.00175
0.292
DataSet_02_23
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CDK10
89759681_89759875_89759681_89759734_89759805_89759875
0.00153
-0.4
DataSet_02_23
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CDK16
47086392_47086622_47086392_47086498_47086558_47086622
0.00203
0.323
DataSet_02_23
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DCXR
79994066_79994519_79994066_79994324_79994419_79994519
0.00016
-0.562
DataSet_02_23
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DDX55
124091978_124093376_124091978_124092209_124093226_124093376
0.00132
0.467
DataSet_02_23
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Showing 1 to 10 of 48 entries
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
65297861
T
C
0.00895
RAVER2
+
FALSE
chr1
179044239
A
G
0.00143
FAM20B
+
TRUE
AluSx
SINE,Alu
chr1
1255401
G
T
0.00216
CPSF3L
-
FALSE
(GCAGG)n
SINE,Alu
chr1
74672474
G
A
0.00292
FPGT-TNNI3K,FPGT
+
FALSE
X12_DNA
SINE,Alu
chr1
36067760
T
C
0.00258
PSMB2
-
TRUE
AluSz
SINE,Alu
chr1
143464946
T
C
0.00109
.
FALSE
chr1
26608015
T
A
3.80922E-07
.
FALSE
chr1
24134721
T
C
0.00113
HMGCL
-
FALSE
chr1
28662057
A
G
3.94650E-05
MED18
+
TRUE
AluSq2
SINE,Alu
chr1
16912029
C
G
0.00268
NBPF1
-
FALSE
Showing 1 to 10 of 204 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression