Dataset Overview
RBP
HNRNPF
Knock-Method
shRNA
RBP Family
RRM_1
Biosample Name
HMLE
Tissue Type
Breast
Biosample Type
Cell line
# of Control
2
# of Treat
1
Species
Human
Data Source
GEO
Profile ID
GSE107542
Platform
GPL20301
Pubmed ID
29269483
HNRNPF - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of HNRNPF
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
ABCA1
3.38
4.95
0.53631
0.00861
0.57190
ABCG1
10.22
15.62
0.53678
0.01468
0.74696
ABHD2
11.44
11.41
-0.60344
0.00293
0.31793
ABHD5
17.53
8.73
-1.15806
7.51745E-05
0.02781
AC007620.3
15.32
10.23
-0.66977
0.02089
0.85925
AC009501.4
0.57
1.23
1.27312
0.04281
1.00000
AC015987.2
20.93
11.75
-0.89528
0.00881
0.57948
AC016683.6
4.56
2.45
-0.88882
0.03078
0.97528
AC114546.1
3.75
1.61
-1.28844
0.04503
1.00000
AC119673.1
28.41
15.31
-0.95697
0.00859
0.57190
Showing 1 to 10 of 582 entries
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Function Analysis of Target Genes of HNRNPF
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A1BG-AS1
58864686_58864840_58859116_58859210_58865079_58865223
0.00101
0.341
DataSet_02_24
View details
A1BG-AS1
58864744_58864840_58859118_58859210_58865079_58865223
0.00173
0.131
DataSet_02_24
View details
ABCB7
74318776_74318896_74296356_74296489_74332720_74332807
0.00183
0.251
DataSet_02_24
View details
ABCC3
48738283_48738475_48736542_48736729_48741041_48741219
0.00059
-0.205
DataSet_02_24
View details
ABHD18
128887108_128887211_128886628_128886761_128904093_128904202
0.00183
-0.375
DataSet_02_24
View details
ABR
915713_915797_915085_915225_915927_916037
0.00097
0.474
DataSet_02_24
View details
AC008915.2
23466790_23466851_23464078_23464586_23468748_23468909
0.00689
-0.26
DataSet_02_24
View details
AC018521.5
45971265_45971324_45968620_45968947_45973068_45973178
0.00033
0.044
DataSet_02_24
View details
AC020915.1
58822564_58822746_58817453_58817582_58823386_58823427
0.00269
-0.715
DataSet_02_24
View details
AC026191.1
9397484_9397543_9391368_9391750_9404523_9404690
0.00254
-0.451
DataSet_02_24
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Showing 1 to 10 of 1,713 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC087632.1
64634741_64634884_64658184_64658274_64592517_64592922
0.00028
-0.634
DataSet_02_24
View details
ACAA1
38170780_38170879_38173086_38173129_38169276_38169357
0.00293
-0.235
DataSet_02_24
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ACY1
52021003_52021077_52021324_52021469_52020620_52020677
0.00113
-0.4
DataSet_02_24
View details
ADCK1
78325418_78325622_78353433_78353592_78288777_78288861
0.00166
-0.34
DataSet_02_24
View details
AHSA1
77928984_77929102_77934425_77934527_77928502_77928585
0.00045
0.45
DataSet_02_24
View details
ALDOA
30077196_30077248_30078205_30078359_30075744_30075826
0.00002
-0.261
DataSet_02_24
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ANKRD54
38228964_38229116_38229165_38229213_38228643_38228751
0.00060
-0.586
DataSet_02_24
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ANXA2
60682411_60682516_60689456_60689537_60678226_60678285
0.00174
0.026
DataSet_02_24
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ATG13
46642591_46642707_46651594_46651650_46639874_46639925
0.00207
0.044
DataSet_02_24
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ATG13
46652446_46652541_46653872_46654009_46651594_46651650
0.00005
-0.3
DataSet_02_24
View details
Showing 1 to 10 of 117 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABTB1
127393233_127393296_127393233_127393261_127393387_127393443
0.00006
0.498
DataSet_02_24
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ACCS
44094996_44095085_44094996_44095067_44096161_44096231
0.00999
-0.094
DataSet_02_24
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ACY1
52021003_52021469_52021003_52021077_52021571_52021640
0.00049
0.45
DataSet_02_24
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ADH5
100003125_100003267_100003152_100003267_100002515_100002603
0.00413
0.432
DataSet_02_24
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AGER
32151052_32151165_32151100_32151165_32150890_32150978
0.00413
-0.368
DataSet_02_24
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AKR1C2
5041391_5042858_5042741_5042858_5040816_5040939
0.00003
-0.542
DataSet_02_24
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AKT2
40742163_40743998_40743875_40743998_40741796_40742011
0.00957
0.297
DataSet_02_24
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AKTIP
53536611_53537118_53537058_53537118_53534129_53534241
0.00560
0.08
DataSet_02_24
View details
ALDH18A1
97393247_97393406_97393253_97393406_97392715_97392806
0.00298
-0.035
DataSet_02_24
View details
ALDOA
30078554_30078687_30078554_30078654_30078770_30078982
0.00617
-0.099
DataSet_02_24
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Showing 1 to 10 of 232 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABTB1
127393187_127393261_127393233_127393261_127391800_127391924
0.00290
-0.583
DataSet_02_24
View details
AC005562.1
28937906_28937960_28937911_28937960_28935447_28935580
0.00026
-0.171
DataSet_02_24
View details
ACAD10
112186814_112187007_112186976_112187007_112186120_112186279
0.00015
0.489
DataSet_02_24
View details
ACCS
44094893_44095067_44094996_44095067_44092805_44092865
0.00152
-0.24
DataSet_02_24
View details
ACSL4
108926364_108926895_108926364_108926781_108939372_108939425
0.00007
0.535
DataSet_02_24
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AGTRAP
11805986_11806280_11806044_11806280_11805859_11805894
0.00707
-0.155
DataSet_02_24
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AK1
130635304_130635459_130635304_130635340_130636889_130636928
0.00481
-0.014
DataSet_02_24
View details
AKAP10
19866152_19866304_19866152_19866279_19871726_19871774
0.00465
-0.5
DataSet_02_24
View details
AKAP10
19866152_19866335_19866152_19866279_19871726_19871774
0.00378
-0.397
DataSet_02_24
View details
AKT2
40741930_40742049_40741930_40742011_40742163_40742292
0.00532
-0.379
DataSet_02_24
View details
Showing 1 to 10 of 279 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABHD16A
31656499_31656896_31656499_31656563_31656791_31656896
0.00032
0.3
DataSet_02_24
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ACBD4
43213474_43214143_43213474_43213599_43213866_43214143
0.00011
0.388
DataSet_02_24
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ACBD4
43213866_43214143_43213866_43213987_43214058_43214143
0.00000
-1.0
DataSet_02_24
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ACY1
52020620_52021469_52020620_52020677_52021003_52021469
0.00118
0.304
DataSet_02_24
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AKAP8L
15514285_15514526_15514285_15514366_15514468_15514526
0.00536
-0.223
DataSet_02_24
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AKT2
40741796_40742292_40741796_40742011_40742163_40742292
0.00251
-0.226
DataSet_02_24
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AKT2
40742163_40743998_40742163_40742292_40743875_40743998
0.00662
0.084
DataSet_02_24
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AMDHD2
2578452_2578719_2578452_2578560_2578650_2578719
0.00000
-0.795
DataSet_02_24
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AMT
49456403_49459005_49456403_49457775_49458924_49459005
0.00261
-0.459
DataSet_02_24
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ANAPC5
121764898_121766300_121764898_121765034_121766118_121766300
0.00004
-0.575
DataSet_02_24
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
16112795
A
G
0.00499
FBLIM1
+
FALSE
chr1
1650801
T
C
0.00761
CDK11B,CDK11A
-
FALSE
chr1
115259341
A
C
2.70927E-07
NRAS
-
FALSE
chr1
36067925
T
C
0.00397
PSMB2
-
TRUE
AluSz
SINE,Alu
chr1
1573181
C
A
0.00038
CDK11B
-
FALSE
chr1
222802926
C
T
0.00035
MIA3
+
FALSE
chr1
145500933
C
T
0.00982
NBPF20,NBPF10,LIX1L
+
FALSE
chr1
42008521
G
T
0.00882
HIVEP3
-
FALSE
chr1
214529320
T
G
0.00365
PTPN14
-
FALSE
AluJb
SINE,Alu
chr1
16958047
C
T
2.98219E-05
.
FALSE
Showing 1 to 10 of 408 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression