Dataset Overview
RBPDDX6
Knock-MethodshRNA
RBP FamilyDEAD
Biosample NamehESCs
Tissue TypeEmbryo
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceGEO
Profile IDGSE112383
PlatformGPL11154
Pubmed ID31588046

DDX6 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of DDX6
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of DDX6


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr798015394GC0.00118BAIAP2L1-FALSE
chr7123390143GA0.00910.FALSE
chr2018468351TC0.00169RBBP9-TRUEAluSz6SINE,Alu
chr3178741082AC0.00145ZMAT3-FALSE
chr1539880822AG0.00281THBS1+FALSE
chr237331221TC1.68149E-05.FALSEAluSx1SINE,Alu
chr1923542193TC0.00099ZNF91-TRUEAluYSINE,Alu
chr2201676441GA0.00140LOC101927795,BZW1+,-FALSE
chr116892274AT0.00371NBPF1-FALSE
chr2216908679CT0.00988PECR-FALSE
chr125655853AG0.00147RSRP1,RHD+,-FALSEAluSzSINE,Alu
chr11650832AG0.00065CDK11B,CDK11A-FALSE
chr124710405AG0.00246STPG1-FALSE
chr1113672569AG0.00674.FALSEAluJbSINE,Alu
chr127879800TG0.00473AHDC1-FALSEMIRbSINE,Alu
chr1226171400TC0.00359SDE2-TRUEBC200SINE,Alu
chr110520487TC0.00559.FALSEAluSx1SINE,Alu
chr1204525548AG0.00501MDM4+TRUEAluSzSINE,Alu
chr1077157784CT0.00027ZNF503-FALSE(T)nSINE,Alu
chr2201774279TC9.55391E-05.FALSEAluSzSINE,Alu
chr933039686GA0.00542DNAJA1+FALSE
chr12333763GA0.00867RER1+FALSE
chr3196659892TG0.00620SENP5+FALSEAluSzSINE,Alu
chr3121382204CT0.00309GOLGB1-FALSE
chr116933628AG0.00430NBPF1-FALSEGA-richSINE,Alu
chr74809089AG0.00552FOXK1+TRUEAluSx1SINE,Alu
chr1156495521CA0.00097IQGAP3-FALSE
chr3112720120TG0.00573GTPBP8+FALSE
chr224225554AG0.00419.FALSEAluSq2SINE,Alu
chr119543457TC0.00569LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr237328013TC0.00364.FALSE
chr1154128333TA0.00204TPM3-FALSE
chr1075008876TC0.00255DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr6116600810GA0.00028DSE,TSPYL1+,-FALSE
chr16314822TC0.00300GPR153-FALSE
chr439551140TC1.44695E-08UGDH-AS1,SMIM14+,-FALSEAluSzSINE,Alu
chr1118066459AG1.18146E-05MAN1A2+FALSE
chr116952920GA0.00475CROCCP2-FALSE
chr119542310TC0.00873LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr145976928GA0.00715PRDX1-FALSE
chr1207219603TC0.00341YOD1-FALSE
chr366419942AG0.00284SLC25A26+FALSE
chr679595097AG0.00712IRAK1BP1+FALSE
chr1474526976TC0.00469BBOF1,ALDH6A1+,-FALSEAluJoSINE,Alu
chr1648388382AG0.00301MIR5095+TRUEAluSzSINE,Alu
chr1201350983CT0.00768LAD1-FALSE
chr186049302AG0.00114CYR61+FALSE
chr11634860GT0.00659CDK11B,CDK11A-FALSE
chr115990929CA0.00202.FALSEAluSx3SINE,Alu
chr47761211CT8.70555E-11AFAP1,AFAP1-AS1+,-FALSE
chr119984104AC0.00638MINOS1-NBL1,NBL1+FALSE
chr119953129TA0.00934MINOS1,MINOS1-NBL1+FALSE
chr1900717CT0.00661KLHL17+FALSE(TTTA)nSINE,Alu
chr159120961GA9.55369E-05MYSM1-FALSE
chr697592894AC0.00654MMS22L-FALSE
chr1101372409TC0.00203SLC30A7+FALSE
chr116928622CA0.00011NBPF1-FALSE
chr337094679GA7.98870E-06LRRFIP2-FALSE
chr5121362874AG0.00022SRFBP1+TRUEFRAMSINE,Alu
chr220192696GA0.00400MATN3,LOC101928222+,-FALSE
chr1145291108AC0.00827NBPF20+FALSE
chr1222713503CG0.00860HHIPL2-FALSE
chr155207988GA0.00914MROH7-TTC4,TTC4+FALSE
chr417488286TG0.00027QDPR-FALSE
chr19160866CA0.00907.FALSE
chr19163328TC0.00287.FALSEAluSpSINE,Alu
chr1145283733AG0.00458NBPF20,NOTCH2NL+FALSE
chr1145513051AG0.00269NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr1180247477CT0.00060.FALSE
chr2118940466AT0.00169CXADR+FALSEAluYSINE,Alu
chr642855057AG0.00034RPL7L1+TRUEAluSpSINE,Alu
chr16282400TC0.00132ICMT-TRUEAluSzSINE,Alu
chr1100658578GA5.62742E-07DBT-FALSE
chr256150885GA0.00624EFEMP1-FALSE
chr1924103987AG1.84513E-07ZNF726+TRUEAluSg4SINE,Alu
chr1169101274TG0.00026ATP1B1+FALSE(T)nSINE,Alu
chr1132625925AG0.00845CCDC73-FALSEAluJbSINE,Alu
chr110438014AC0.00046KIF1B+FALSE
chrX77083673TC0.00090MAGT1-TRUEAluSz6SINE,Alu
chr1145513098AG0.00514NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr2204300093AC0.00105RAPH1-FALSEFLAM_CSINE,Alu
chr2101622881CA1.48865E-05RPL31+FALSE
chr457801150AT0.00462REST+FALSE
chr2232319610AT0.00029NCL-FALSE
chr11458255TG0.00438ATAD3A+FALSE
chr3183861243AG0.00049EIF2B5+FALSE
chr128825465AG0.00756PHACTR4+TRUEAluSgSINE,Alu
chr119586520AG0.00305MRTO4+TRUEAluSzSINE,Alu
chr476568676TA0.00051G3BP2-FALSE
chr153288924AG0.00099ZYG11B+TRUEAluJoSINE,Alu
chr1745761110GT0.00816.FALSE
chr2220416967CT0.00300OBSL1-FALSE
chr2118583874CG0.00569DDX18+FALSE
chr642854682AG5.90307E-05RPL7L1+TRUEAluScSINE,Alu
chr124798499TC0.00028NIPAL3+FALSE(T)nSINE,Alu
chr1144615138TG0.00196NBPF20,NBPF9+FALSE
chr3126156660CG0.00182ZXDC-FALSE
chr2219100706AG0.00874ARPC2+TRUEAluSx1SINE,Alu
chr119810693GC0.00042CAPZB-FALSE
chr2025428617AG0.00622GINS1+FALSEAluJbSINE,Alu
chr2198368110CA0.00053HSPE1,HSPE1-MOB4+FALSE
chr167874689TC7.42611E-10SERBP1-TRUEAluSx3SINE,Alu
chr8144662353GA0.00951EEF1D-FALSE
chr145244411CA0.00362RPS8+FALSE
chr1120166681GA0.00879ZNF697-FALSE
chr124289896TG0.00051PNRC2+FALSE
chr1256815652CT1.92663E-05TIMELESS-FALSE
chr167874854TC0.00358SERBP1-TRUEAluSxSINE,Alu
chr116576291AG0.00842FBXO42-FALSEA-richSINE,Alu
chr128661657AG0.00910MED18+TRUEAluSgSINE,Alu
chr1109816293GC0.00759CELSR2+FALSE
chr1109855152AC0.00227SORT1-FALSEA-richSINE,Alu
chr3120115286TG0.00077FSTL1-FALSE
chr2233446568GA0.00900EIF4E2+FALSE
chr1226172221TC0.00030SDE2-FALSEL1MEfSINE,Alu
chr2025427885AG0.00455GINS1+TRUEAluSzSINE,Alu
chr237331531TC0.00389.FALSEAluJbSINE,Alu
chr1959095449AG6.25071E-06CENPBD1P1+TRUEAluJbSINE,Alu
chr175288077GC0.00066RABEP1+FALSE
chr565120054CT0.00625NLN+FALSE
chr237230734CT0.00025HEATR5B-FALSE
chr116892913AG0.00441NBPF1-FALSE
chr237331841CT0.00179.FALSEL1MC4SINE,Alu
chr116918783CT0.00252NBPF1-FALSE
chr1156567496CT0.00012GPATCH4-FALSEMIR3SINE,Alu
chr765992665TC2.17687E-05.FALSEAluJrSINE,Alu
chr1210025751GA0.00067DIEXF+FALSETigger4aSINE,Alu
chr110519912TC0.00942.FALSEAluJrSINE,Alu
chrX152916229GA0.00809DUSP9+FALSE
chr119585553AG0.00039MRTO4+TRUEAluSc8SINE,Alu
chr1931935TC0.00796.FALSE
chr1158067059AC0.00655KIRREL+FALSE
chr456295166AG0.00988CLOCK-FALSE
chr136522460AG0.00407.FALSEAluScSINE,Alu
chr239050141AC0.00924DHX57-FALSE
chr2176789423CA0.00441LNPK-FALSEMSTB1SINE,Alu
chr1671681515AG0.00308PHLPP2-FALSE
chr5122359499CA0.00277PPIC-FALSE(AC)nSINE,Alu
chr349763338TC2.41941E-06IP6K1-FALSE
chr2100019496AG0.00789REV1-FALSE
chr1810691357GA0.00082PIEZO2-FALSE
chr116929148GA0.00037NBPF1-FALSELTR16B2SINE,Alu
chr47060959TC0.00832GRPEL1-FALSE
chr128825331AG0.00563PHACTR4+TRUEAluSgSINE,Alu
chr489181456TC0.00024PPM1K-TRUEAluSx1SINE,Alu
chr1742225547AC0.00240C17orf53+FALSE
chr2206987229TC0.00743.FALSEAluSxSINE,Alu
chr63021448TC0.00126HTATSF1P2-TRUEAluJr4SINE,Alu
chr342599091GA0.00196SEC22C-FALSE
chr7127947979TC0.00257.FALSEAluJrSINE,Alu
chrX3526613CT0.00930PRKX-FALSE
chr286249840TC0.00482LOC90784-TRUEAluJrSINE,Alu
chr1946052975TC0.00652OPA3-TRUEAluSz6SINE,Alu
chr116133978TC0.00515UQCRHL-FALSE
chr2105881486AG0.00042TGFBRAP1-FALSE
chr116096934CT0.00336FBLIM1+FALSE
chr1145694181AG0.00052NBPF20,NBPF10+TRUEAluSzSINE,Alu
chr2101010038GA0.00339CHST10-FALSE
chr1742877749TC0.00287GJC1-TRUEAluSgSINE,Alu
chr1346530764TG0.00385.FALSE
chr110520296TC0.00765.FALSEAluSxSINE,Alu
chr1016554732TA0.00706PTER+FALSE
chr46302519GA0.00195WFS1+FALSE
chr3194361676CT0.00378LSG1-FALSEMSTASINE,Alu
chr128825830AG0.00549PHACTR4+TRUEAluSpSINE,Alu
chr2128952699AG0.00497UGGT1+TRUEAluSpSINE,Alu
chr1236702210AG0.00153LGALS8+FALSE
chr191990450AT0.00091CDC7+FALSELFSINE_VertSINE,Alu
chr3149237753GA2.17555E-05WWTR1-FALSEAluSq2SINE,Alu
chr19644558AG0.00451.FALSEAluSxSINE,Alu
chr140147817CA0.00982HPCAL4-FALSE
chr269689663TC0.00091AAK1-TRUEAluSgSINE,Alu
chr1168218671AG0.00974.FALSEAluSzSINE,Alu
chr633377511TC5.31992E-06.FALSE(TG)nSINE,Alu
chr11595540TC0.00042CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr19328120AG0.00024H6PD+TRUEAluJrSINE,Alu
chr154871709TC0.00110SSBP3-FALSE
chr7115898442GC2.36867E-05TES+FALSEAluSxSINE,Alu
chr1590819444AG5.90002E-05.FALSEAluSxSINE,Alu
chr3185646406AT0.00023TRA2B-FALSE
chr131405694GA0.00986PUM1-FALSE
chr175671215CT0.00019SLC44A5-FALSE
chr986553587GA0.00556C9orf64-FALSE
chr812283440AG0.00041FAM86B2-FALSE
chr1615023271GA0.00403.FALSE
chr1569981CA4.36771E-05.FALSE
chr1249745500AG0.00265DNAJC22+TRUEAluSx3SINE,Alu
chr19160900TC0.00893.FALSEAluJbSINE,Alu
chr1149913733TC0.00143OTUD7B-TRUEMER96BSINE,Alu
chr3181430144CT0.00043SOX2-OT,SOX2+FALSE
chr2207942527AT0.00107KLF7-FALSE
chr1203277243GT1.60795E-05BTG2+FALSE
chr717384440AG0.00271AHR+TRUEAluSxSINE,Alu
chr220401859AT0.00930SDC1-FALSE(A)nSINE,Alu
chr1154438880TC0.00170IL6R+FALSE
chr348787042TC1.97898E-05PRKAR2A-TRUEAluSx3SINE,Alu
chr2054963816TC0.00750AURKA-TRUEAluSq10SINE,Alu
chr187328396AT0.00148SEP15-FALSE
chrX123045381AG0.00893XIAP+TRUEAluJoSINE,Alu
chr19326888TC0.00887H6PD+FALSEAluSx1SINE,Alu
chr3184766301TC0.00648VPS8+FALSE
chr3122293773AT0.00852DTX3L+FALSE
chr1114940216TG0.00207TRIM33-FALSE(T)nSINE,Alu
chr1533064742CG0.00215FMN1-FALSE
chr261764920CA0.00363XPO1-FALSE
chr471682381TC0.00037GRSF1-TRUEAluSz6SINE,Alu
chr110517313TC0.00015.FALSEAluJrSINE,Alu
chr3196557357GT0.00615PAK2+FALSE
chr1204526648AG0.00302MDM4+TRUEAluSxSINE,Alu
chr344839350AC0.00837KIF15+FALSE
chr127205224TC0.00353.FALSEAluScSINE,Alu
chr119542410TC0.00270LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1144833386AG0.00325NBPF20+FALSEL1MEcSINE,Alu
chr1155838369GC0.00346SYT11+FALSE
chr1100550370TA0.00731SASS6-FALSE
chr1453243545TC3.01634E-08GNPNAT1-TRUEAluSx3SINE,Alu
chr271214819AT0.00346TEX261-FALSE
chr1227211026CG0.00373CDC42BPA-FALSE
chr128920925AG0.00294RAB42+TRUEAluSxSINE,Alu
chr133148196AG0.00303SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr1109475629AG0.00744GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr16683582CA0.00152PHF13+FALSE
chr2206987108TC0.00015.FALSEAluSxSINE,Alu
chr315113694TC0.00622RBSN-TRUEAluSz6SINE,Alu
chr116958064AG2.44983E-05.FALSE
chr1162494683GT0.00269UHMK1+FALSEAluSg4SINE,Alu
chr310192596AG7.92003E-05VHL+TRUEAluSx1SINE,Alu
chr1182353198AT0.00473GLUL-FALSE
chr110517998TC0.00821.FALSEAluJrSINE,Alu
chr110517314TC0.00288.FALSEAluJrSINE,Alu
chr1490509582TC0.00017TDP1+FALSE
chr151822219GA0.00325EPS15-FALSE
chr132158374TC0.00134COL16A1-FALSE
chr344790781TC0.00074KIAA1143-TRUEAluYSINE,Alu
chr165299558CT0.00161JAK1-FALSE
chr129464358AG0.00056LOC642846+FALSE
chr5174956487TC0.00457SFXN1+FALSE
chr168902411AG0.00357PMM2+FALSE
chr1193474585TG0.00531TAF1D-FALSE
chr62833055GA0.00015SERPINB1-FALSEAluSxSINE,Alu
chr168940566AC0.00126DEPDC1-FALSE
chr1144868170CT0.00415NBPF20,PDE4DIP+,-FALSE
chr1172410967GA1.85684E-05C1orf105,PIGC+,-FALSE
chr146075661AG0.00071NASP+TRUEAluSx4SINE,Alu
chr211781593GT0.00551GREB1+FALSE
chr136386884CT0.00375AGO1+FALSE
chr145975740CG0.00096MMACHC+FALSEAluSx4SINE,Alu
chr1180169330CT0.00374FLJ23867+FALSEMIRSINE,Alu
chr152306075TC8.71211E-05NRDC-FALSE(TCA)nSINE,Alu
chr1533064791GA0.00203FMN1-FALSE
chr1253435627AG0.00010EIF4B+FALSE
chr6160211656GT0.00339MRPL18+FALSE
chr1148189152AC0.00050PTPRJ+FALSE
chr349395695AC0.00159GPX1-FALSE
chr115896984AG0.00297DNAJC16+FALSEFLAM_CSINE,Alu
chr3141879810TC0.00784GK5-FALSEAluJrSINE,Alu
chr1120164252GA0.00139ZNF697-FALSE
chr314528004TC0.00091SLC6A6+FALSE
chr572801323CA0.00240BTF3+FALSE
chr217897488TC0.00430SMC6-FALSE
chr12336210CT0.00206RER1+FALSE
chr136068325TC0.00638PSMB2-TRUEAluScSINE,Alu
chr2137789767AG0.00236.FALSEAluSxSINE,Alu
chr1227953267TG0.00233KLHL42+FALSE
chr5175816759TA0.00018.FALSE
chr1079800443AG0.00971RPS24+FALSE
chr5112350098CT7.36383E-05DCP2+FALSE
chr261277384AG0.00339PEX13+TRUEAluSxSINE,Alu
chr116933135GT0.00363NBPF1-FALSEL1MC2SINE,Alu
chr2128644574AG0.00163.FALSE
chr1114443606AG0.00014AP4B1-AS1,AP4B1+,-FALSEAluSpSINE,Alu
chr812879062TC0.00035KIAA1456+FALSE
chr1911945631AG0.00091ZNF440+TRUEAluSpSINE,Alu
chr110517653TC0.00475.FALSEAluSx1SINE,Alu
chr1937073373TC0.00492ZNF529,ZNF529-AS1+,-FALSEAluYSINE,Alu
chr146076642AG0.00552NASP+TRUEAluSxSINE,Alu
chr1160967848TC0.00200F11R-TRUEAluSpSINE,Alu
chr457327058AG0.00315PAICS+TRUEAluSx1SINE,Alu
chr237479862CT0.00603PRKD3-FALSE
chr6126661502GT0.00873CENPW+FALSE
chr135650014CA0.00012SFPQ-FALSE
chr5130729522TG0.00506CDC42SE2+FALSE(T)nSINE,Alu
chr1145281408CT0.00220NBPF20,NOTCH2NL+FALSE
chr165330637CT0.00047JAK1-FALSE
chr2018469048TC0.00213RBBP9-TRUEAluJrSINE,Alu
chr190049040AG0.00190LRRC8B+FALSE
chr117393261TC3.60266E-05PADI2-FALSE
chr9131457814GA0.00021SET+FALSE
chr117522430AG0.00684.FALSE
chr7100957851TC0.00028LOC101927746,IFT22+,-FALSEMADE1SINE,Alu
chr2197004439AG0.00034STK17B-FALSE
chr11647893CT0.00509CDK11B,CDK11A-FALSE
chr436121336TG0.00183ARAP2-FALSE
chr1780899281GA0.00053TBCD+FALSE
chr2206983115TC0.00992.FALSEAluJbSINE,Alu
chr1145209366AG0.00499NBPF20,NOTCH2NL+FALSE
chr192975244TA0.00220EVI5-FALSE
chr1541593352AG0.00083.FALSEAluSz6SINE,Alu
chr1569803GA0.00166.FALSE
chr237331201TC0.00291.FALSEAluSx1SINE,Alu
chr921331119CT0.00343KLHL9-FALSEL1MSINE,Alu
chr263817855CG0.00096MDH1+FALSE
chr2233199107CT0.00675DIS3L2+FALSE
chr28823941GA0.00053ID2+FALSE
chr856985609GT0.00134RPS20-FALSE
chr1474526945TC2.53258E-07BBOF1,ALDH6A1+,-FALSEAluJoSINE,Alu

Differential Expression Gene Analysis