Dataset Overview
RBPELAVL1
Knock-MethodsiRNA
RBP FamilyRRM_1
Biosample NameHela
Tissue TypeCervix
Biosample TypeCell line
# of Control1
# of Treat1
SpeciesHuman
Data SourceGEO
Profile IDGSE29943
PlatformGPL11154
Pubmed ID21723171

ELAVL1 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of ELAVL1
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of ELAVL1


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr2172179003TC0.00192METTL8-TRUEAluYSINE,Alu
chr154355105AG0.00325YIPF1-FALSEMIRbSINE,Alu
chr4169911112CA0.00142CBR4-FALSE
chr128865502GA0.00531RCC1+FALSE
chr8143739435CT7.32829E-06JRK-FALSE
chr217836722TA0.00816VSNL1+FALSE
chr119953120GA0.00197MINOS1,MINOS1-NBL1+FALSE
chr1542861705AG0.00518HAUS2+TRUEAluJbSINE,Alu
chr582877162GA0.00296VCAN+FALSE(A)nSINE,Alu
chr72394991CT9.93448E-08EIF3B+FALSE
chr1184762524TC0.00778FAM129A-TRUEAluSzSINE,Alu
chr488060832TC0.00531AFF1+FALSE
chr110520692TC0.00973DFFA-TRUEAluSc8SINE,Alu
chr1610623666TC1.68352E-07EMP2-TRUEAluSpSINE,Alu
chr116905869GA0.00027NBPF1-FALSE
chr165330637CT0.00047JAK1-FALSE
chr1117645998AG0.00434.FALSE
chr132697071CA0.00134EIF3I+FALSEAluSpSINE,Alu
chr1116609185GA0.00187SLC22A15+FALSE
chr1206579798TC0.00476SRGAP2+FALSE
chr8143352528AC0.00312TSNARE1-FALSE
chr1206635244TA0.00195SRGAP2+FALSE
chr2232328545CT0.00581NCL-FALSE
chr195362952TC0.00155CNN3-FALSE
chr417803009TC0.00062DCAF16-TRUEAluSzSINE,Alu
chr1582336939GA2.47536E-05MEX3B-FALSE
chr11572530AC0.00425CDK11B-FALSE
chr116889423GC0.00459NBPF1-FALSEL1MC4SINE,Alu
chr1145688983AG0.00072NBPF20,NBPF10,RNF115+TRUEAluSc8SINE,Alu
chr12125511312AG0.00638THRIL-FALSEAluSx1SINE,Alu
chr532404176CT0.00342ZFR-FALSE
chr5126171974CT0.00867LMNB1+FALSE
chr3122283287TC8.96368E-06DTX3L,PARP9+,-FALSE
chr187328400CT0.00755SEP15-FALSE
chr1155403831AG0.00676ASH1L,POU5F1P4+,-FALSE
chr1742876791TC0.00461GJC1-TRUEAluSz6SINE,Alu
chr1900717CT0.00661KLHL17+FALSE(TTTA)nSINE,Alu
chr1118167515CT0.00852FAM46C+FALSE
chr127202812TC0.00353.FALSEAluSq2SINE,Alu
chr5180665123GA0.00259RACK1-FALSE
chr16282315TC5.02629E-05ICMT-TRUEAluSzSINE,Alu
chr2208620129AG0.00061CCNYL1+TRUEEutTc1-N1SINE,Alu
chr636894338AG0.00607C6orf89+FALSEGA-richSINE,Alu
chr237330476TC2.74271E-05.FALSEAluSq2SINE,Alu
chr286249840TC0.00482LOC90784-TRUEAluJrSINE,Alu
chr12115914GT0.00970PRKCZ,FAAP20+,-FALSE
chr1946053393TC0.00514OPA3-TRUEAluSx1SINE,Alu
chr3183900836GA2.54977E-05AP2M1+FALSE
chr154412181TC0.00524LRRC42+FALSE
chr1144614931GA0.00469NBPF20+FALSE
chr5179665201CT0.00037MAPK9-FALSEAluSx4SINE,Alu
chr342591956GA0.00503SEC22C-FALSE
chr144072018CT0.00783PTPRF+FALSE
chr19163465TC0.00342.FALSEAluSpSINE,Alu
chr178029102GA0.00086ZZZ3-FALSE
chr1145693060AG2.60299E-05NBPF20,NBPF10+TRUEAluSz6SINE,Alu
chr189447839CG0.00488KYAT3,RBMXL1-FALSE
chr1075009781TC9.15447E-06DNAJC9-AS1,MRPS16+,-FALSEAluYSINE,Alu
chr1145694022AG0.00708NBPF20,NBPF10+TRUEAluSzSINE,Alu
chr128662182AG0.00402MED18+TRUEAluSq2SINE,Alu
chr1070277096TC0.00229SLC25A16-FALSEL2cSINE,Alu
chr237327670TC5.08697E-08.FALSE
chr1144607387GC0.00016NBPF20+FALSE
chr146075720AG0.00105NASP+TRUEAluSx4SINE,Alu
chr342610515GA0.00099SEC22C-FALSE
chr1490865627TC0.00162CALM1+FALSE
chr133149266AG0.00292SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr12434523TC9.26798E-05PLCH2+FALSE
chr1670695982TC0.00926MTSS1L-FALSE
chr11337334GT0.00549LOC148413,MRPL20+,-FALSE
chr121806710TG0.00194NBPF3+FALSE
chr3160968914TC0.00305NMD3+FALSE
chr1753470462CT0.00230MMD-FALSE
chr1765334986TC1.42836E-05PSMD12-TRUEAluSqSINE,Alu
chr191981317TA0.00539CSNK1G2+FALSE
chr133147915AG6.77632E-09SYNC,RBBP4+,-FALSEAluSxSINE,Alu
chr110517952CA0.00341.FALSE
chr116892275CT0.00230NBPF1-FALSE
chr119543797TC0.00754LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr115818065TC0.00372CASP9-TRUEAluJbSINE,Alu
chr116932594TC0.00064NBPF1-FALSEL1MC2SINE,Alu
chr286272758GA0.00023POLR1A-FALSE
chr12336210CT0.00509RER1+FALSE
chr1120162587GA0.00730ZNF697-FALSE
chr6114181220AG0.00265MARCKS+FALSE
chr1726672364CG0.00645TNFAIP1+FALSE
chr1144521102TA0.00119NBPF20+FALSE
chr237431681AG0.00436CEBPZOS,CEBPZ+,-FALSEAluScSINE,Alu
chr116890644CT0.00439NBPF1-FALSE
chr1463841402AC0.00692PPP2R5E-FALSE
chr1075009721TC1.96034E-06DNAJC9-AS1,MRPS16+,-FALSEAluYSINE,Alu
chr232535692AG0.00236.FALSEAluJbSINE,Alu
chr1203767822TG0.00064ZC3H11A,ZBED6+FALSE
chr540832555AT0.00347RPL37-FALSE
chr1194801635GT0.00844SRSF8+FALSE
chr2128620438CA0.00230AMMECR1L-FALSE
chr537290413TC0.00467.FALSEAluSzSINE,Alu
chr186047210CT0.00201CYR61+FALSE
chr1773940167TC0.00035ACOX1-TRUEAluJbSINE,Alu
chr1109746601AG0.00024KIAA1324+TRUEAluJbSINE,Alu
chr193307479CA0.00809FAM69A,RPL5+,-FALSE
chr1179327010AG0.00085SOAT1+TRUE
chr1204526713AG0.00078MDM4+TRUEAluSxSINE,Alu
chr1681064656AG0.00120CENPN+TRUEAluSgSINE,Alu
chr1552601189CT0.00574MYO5A-FALSE
chr510655842CT0.00024ANKRD33B+FALSE
chr3178741082AC5.87013E-06ZMAT3-FALSE
chr12133298025AG6.18330E-06PGAM5+TRUEAluJoSINE,Alu
chr110517527TC0.00453.FALSEAluSx1SINE,Alu
chr10116603648AG0.00267FAM160B1+FALSE
chr2132275343GT0.00334LOC150776+FALSE
chr170904800GT0.00772CTH+FALSE
chr153289759AG0.00329ZYG11B+TRUEAluSzSINE,Alu
chr1419684445AG0.00351DUXAP10+FALSE
chr145976722GT0.00292MMACHC,PRDX1+,-FALSE
chr1528502279AG0.00120HERC2-FALSE
chr2131906031CT0.00374PLEKHB2+FALSE
chr1179813613TC0.00595TOR1AIP2-FALSE
chr16282420TC0.00779ICMT-TRUEAluSzSINE,Alu
chr120976163CT1.02809E-07PINK1,PINK1-AS+,-FALSEAluSzSINE,Alu
chr1912742509AG0.00717.FALSEAluSxSINE,Alu
chr116932809CT0.00887NBPF1-FALSEL1MC2SINE,Alu
chr629910604CA0.00144.FALSE
chr3179117241TC0.00133GNB4-TRUEAluSzSINE,Alu
chr132373838TG0.00376PTP4A2-FALSE(T)nSINE,Alu
chr1111969752AG0.00531OVGP1-FALSE
chr136392543GT0.00971.FALSE(T)nSINE,Alu
chr123408939TA1.04314E-06KDM1A+FALSE
chr111847902CA0.00364C1orf167,MTHFR+,-FALSE
chr3176739663AG5.46505E-07TBL1XR1-FALSE
chr237230734CT0.00025HEATR5B-FALSE
chr3196670086TG1.91816E-05NCBP2-AS2+FALSE
chr534189578TC0.00378.FALSE
chr1450053350TA0.00071.FALSE7SLRNASINE,Alu
chr1298942808AG0.00019TMPO+TRUEAluScSINE,Alu
chr124861704GA0.00345RCAN3+FALSE
chr349315576TC0.00191USP4-FALSE
chr122400702TC0.00883CDC42+FALSEAluSc8SINE,Alu
chr1919791270AG0.00732ZNF101+TRUEAluSq2SINE,Alu
chr154571374AG0.00280TCEANC2+TRUEAluScSINE,Alu
chr3196079280TC0.00614.FALSEAluSxSINE,Alu
chr1424661017GT0.00771TM9SF1-FALSE
chr1153782011CT0.00913GATAD2B-FALSE
chr11469782GC0.00544ATAD3A+FALSE
chr576372541GC0.00498ZBED3-FALSE
chr139549983GA0.00896MACF1+FALSE
chr2120021785TC0.00751STEAP3+FALSE
chr185278156CT0.00663.FALSEAluSz6SINE,Alu
chr1201846617AC0.00380IPO9+FALSE(CA)nSINE,Alu
chr730825575CA0.00101INMT-FAM188B,FAM188B+FALSE
chr185785552TC0.00334DDAH1-FALSE
chr11650797AG0.00325CDK11B,CDK11A-FALSE
chr2128602967TG0.00026.FALSEAluSpSINE,Alu
chr19162932AT0.00635.FALSE
chr124798089GA0.00815NIPAL3+FALSE
chr1231154935CT0.00093FAM89A-FALSE
chrX3523061CG0.00023PRKX-FALSE(AC)nSINE,Alu
chr1147124310TG0.00968ACP6-FALSE
chr170717293GA0.00716SRSF11+FALSE
chr184373309TC0.00627TTLL7-FALSE
chr136067821TC8.78017E-05PSMB2-TRUEAluSzSINE,Alu
chr3196662641TC0.00059NCBP2-FALSE
chr116933628AG0.00430NBPF1-FALSEGA-richSINE,Alu
chr144685732TC8.08877E-10DMAP1+FALSE
chr344791536TC4.11776E-05KIAA1143-TRUEAluJrSINE,Alu
chr363996262CT0.00681PSMD6-AS2,PSMD6+,-FALSE
chr1114940211GT8.00129E-05TRIM33-FALSE(T)nSINE,Alu
chr135644502AT0.00702SFPQ-FALSE(A)nSINE,Alu
chr119542433TC0.00076LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr238522141GT0.00147ATL2-FALSE
chr2219460472TC0.00187CNOT9+FALSE
chr2191799592AG2.07606E-11GLS+TRUE
chr2178129412GT0.00071NFE2L2-FALSE(CGG)nSINE,Alu
chr155207983TA0.00018MROH7-TTC4,TTC4+FALSE
chr352448770AG0.00498PHF7+TRUEAluJbSINE,Alu
chr4109551185GA0.00344RPL34+FALSE
chr2161130867CA0.00034RBMS1-FALSE
chr122854928AG0.00258ZBTB40+FALSEA-richSINE,Alu
chr657034840TG0.00581ZNF451,LOC101927211+,-FALSE
chr153679610GA0.00073CPT2+FALSEAluSzSINE,Alu
chr174672474GA0.00150FPGT-TNNI3K,FPGT+FALSEX12_DNASINE,Alu
chr11118471800TA0.00875ARCN1+FALSEAluSx3SINE,Alu
chr2101886749TG0.00534CNOT11+FALSE
chr116889004CT0.00977NBPF1-FALSE
chr123636277AT0.00295HNRNPR-FALSE
chr11662547TC0.00556SLC35E2-TRUEAluYSINE,Alu
chr116912099GC0.00450NBPF1-FALSE
chr19328106AG0.00394H6PD+TRUEAluJrSINE,Alu
chr237331555TC0.00171.FALSEAluJbSINE,Alu
chr1745761108GT0.00127.FALSE
chr344791320TC0.00059KIAA1143-TRUEAluJrSINE,Alu
chr167896040GA1.31286E-05SERBP1-FALSE
chr110517313TC0.00196.FALSEAluJrSINE,Alu
chr76063467GA0.00620EIF2AK1-FALSE
chr514510071GT0.00130TRIO+FALSE
chr2103332887TA0.00515MFSD9-FALSEL2d2SINE,Alu
chr146125880TC0.00686GPBP1L1-FALSE
chr5140564263CT0.00475PCDHB16+FALSE
chr197144750TC0.00262.FALSE
chr3124488267GA3.46260E-06ITGB5-FALSE
chr532601672AT0.00563SUB1+FALSE
chr1204526660AG0.00478MDM4+TRUEAluSxSINE,Alu
chr237327677TC0.00019.FALSE
chr11118620064AG0.00192DDX6-FALSE(A)nSINE,Alu
chr1156692049AT6.25184E-05ISG20L2-FALSE
chr269689663TC0.00091AAK1-TRUEAluSgSINE,Alu
chr1120839683GA0.00875FAM72B+FALSE
chr3148748380TC0.00240HLTF-FALSE
chr16283348TC0.00247ICMT-TRUEAluSx3SINE,Alu
chr653363497AG0.00106GCLC-FALSE
chr167874697TC0.00642SERBP1-TRUEAluSx3SINE,Alu
chr1109818270CT0.00996CELSR2+FALSE
chr110520378TC8.57705E-06.FALSEAluSx1SINE,Alu
chr264687777GT7.38315E-07LGALSL+FALSE
chr1114306369AT0.00834RSBN1-FALSE
chr119543457TC0.00012LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr840011786CA0.00196C8orf4+FALSE
chr16662500CG0.00235KLHL21-FALSE
chr13545204CG0.00829TPRG1L+FALSE
chrX123046306AG0.00016XIAP+TRUEAluJbSINE,Alu
chr5150647744AG0.00036GM2A+TRUEAluScSINE,Alu
chr1246831356GA0.00616CNST+FALSE
chr352567617AG0.00025NT5DC2-FALSEG-richSINE,Alu
chr1145273345TC0.00640NBPF20,NOTCH2NL+FALSE
chr8104343686GA0.00031FZD6+FALSE
chr568788642GC3.71778E-05OCLN+FALSE
chr178378932AG0.00372MYH10-FALSE
chr1109795026TC0.00355CELSR2+FALSE
chr19160963TC0.00098.FALSEAluJbSINE,Alu
chr116933583TC0.00050NBPF1-FALSEGA-richSINE,Alu
chr2134728175AG6.62284E-07IFNAR1+TRUEAluScSINE,Alu
chr1145512024AG0.00836NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr5175816758TA0.00528.FALSE
chr11597020CG0.00021CDK11B,SLC35E2B-FALSE
chr1919791650AG1.64958E-05ZNF101+TRUEAluScSINE,Alu
chr856985610AT0.00041RPS20-FALSE
chr19161203TC3.69156E-05.FALSEAluSxSINE,Alu
chr3141879765TC0.00212GK5-TRUEAluJrSINE,Alu
chr232535287AG0.00891.FALSEFLAM_CSINE,Alu
chr237327651TC0.00395.FALSE
chr117766126AG0.00017RCC2-FALSE
chr1674656352TC0.00187RFWD3-TRUEAluJbSINE,Alu
chr1949472GA9.07885E-12ISG15+FALSE
chr145975673AG0.00827MMACHC+TRUEAluSx4SINE,Alu
chr136068370TC0.00789PSMB2-TRUEAluScSINE,Alu
chr226477130TC0.00501HADHB+FALSE
chr123419855TC0.00555LUZP1-FALSE
chr320195395CT3.65176E-06KAT2B+FALSE
chr255459824CT0.00786RPS27A+FALSE
chr2206981796TC0.00137.FALSEAluJbSINE,Alu
chr1212534448TC0.00926PPP2R5A+FALSE
chr1109240641TA0.00090PRPF38B+FALSE
chr417804847TC0.00306DCAF16-TRUEAluSxSINE,Alu
chr1495572111AC0.00409DICER1-FALSE
chr187379498TG0.00784SEP15-FALSE
chr5162902516TC0.00226HMMR+FALSE
chr246612340GT3.13955E-05EPAS1+FALSE
chr146828460CT0.00393NSUN4+FALSE
chr12121769840TC0.00499ANAPC5-TRUEAluJrSINE,Alu
chr16282324TC0.00013ICMT-TRUEAluSzSINE,Alu
chr1148004440CA0.00082NBPF8-FALSE
chr398304403GA0.00997CPOX-FALSE
chr1765335445TC0.00084PSMD12-TRUEAluSxSINE,Alu
chr16282420TC0.00133ICMT-TRUEAluSzSINE,Alu
chr115899312GT0.00776AGMAT-FALSE
chr11447756GC0.00354ATAD3A+FALSE
chr8101932094TA0.00288YWHAZ-FALSEMER34B-intSINE,Alu
chr1109474776AG0.00088GPSM2,CLCC1+,-FALSEAluSzSINE,Alu
chr182544702GA0.00522METTL4-FALSE
chr1225707043TC2.18813E-07ENAH-FALSE
chr110518797TC0.00148.FALSEAluSx1SINE,Alu
chr116891340TA0.00440NBPF1-FALSE
chr118707394TA4.23595E-06RPL27A+FALSE
chr16160958AG0.00967KCNAB2+FALSE
chr116932429CG0.00076NBPF1-FALSEL1MC2SINE,Alu
chr189447720GA0.00030KYAT3,RBMXL1-FALSE
chr114590GA0.00050WASH7P-FALSE
chr110520487TC0.00559.FALSEAluSx1SINE,Alu
chr110517276TC0.00283.FALSEAluJrSINE,Alu
chr1155695968AG0.00017DAP3+TRUEAluSpSINE,Alu
chr210908893AG0.00087ATP6V1C2+FALSE
chr1114443618AG0.00910AP4B1-AS1,AP4B1+,-FALSEAluSpSINE,Alu
chr314186757CG0.00864XPC-FALSE
chr438946481AG0.00168FAM114A1+FALSEMER1BSINE,Alu
chr3133307642TG0.00523CDV3+FALSE(TT)nSINE,Alu
chrX16781186AG0.00220.FALSEAluJoSINE,Alu
chr1121133770AG0.00295SRGAP2-AS1,SRGAP2B,SRGAP2C+,-FALSEL1MB4SINE,Alu
chrX118673382TC0.00021CXorf56-TRUEAluSzSINE,Alu
chr1148023067CT0.00772NBPF8-FALSE
chr1144922583GA0.00101NBPF20,PDE4DIP+,-FALSE
chr9130268408TC6.51633E-05FAM129B-FALSE(CTCA)nSINE,Alu
chr320025663GT0.00612RAB5A,PP2D1+,-FALSE
chr1214524576TC0.00060PTPN14-TRUEAluSgSINE,Alu
chr111783776CA0.00039.FALSEAluSqSINE,Alu
chr285773494TC0.00099GGCX-TRUEAluYSINE,Alu
chr1155403823AG0.00850ASH1L,POU5F1P4+,-FALSE
chr7129472333CT0.00292UBE2H-FALSE(CA)nSINE,Alu
chr1114443608AG0.00147AP4B1-AS1,AP4B1+,-FALSEAluSpSINE,Alu
chr1143467373TC0.00182.FALSE
chr237330487TC0.00242.FALSEAluSq2SINE,Alu
chr116944953TG0.00158CROCCP2-FALSE
chr44291832AT6.49020E-08LYAR-FALSE
chr108116464GA0.00695GATA3+FALSEA-richSINE,Alu
chr29629953CA0.00042ADAM17-FALSE
chr3156258283TC0.00686SSR3-TRUEAluYk3SINE,Alu
chr1257450118TA0.00669NEMP1-FALSE
chr332567573GA0.00320DYNC1LI1-FALSE(AT)nSINE,Alu
chr3197611106AG0.00137.FALSEAluSx1SINE,Alu
chr3122283294GC0.00066DTX3L,PARP9+,-FALSE
chr286249961TC0.00292LOC90784-TRUEAluJrSINE,Alu
chr136067752TC0.00402PSMB2-TRUEAluSzSINE,Alu
chr1958375707AG0.00156ZNF587+TRUEAluSgSINE,Alu
chr1153914500GA3.11507E-05DENND4B-FALSE
chr1921367088AG0.00018ZNF431+TRUEAluScSINE,Alu

Differential Expression Gene Analysis