RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	16890130	A	C	0.00594	NBPF1	-	FALSE
chr1	8413129	G	A	0.00040	RERE	-	FALSE
chr1	11084104	G	A	0.00116	TARDBP	+	FALSE
chr17	4721376	A	G	0.00177	PLD2	+	FALSE
chr8	41401571	T	A	0.00240	LOC102723729,GINS4	+,-	FALSE
chr12	52631385	G	C	0.00777	KRT7	+	FALSE
chr1	89447882	A	G	0.00103	KYAT3,RBMXL1	-	FALSE
chr3	33186087	A	G	1.22529E-05	CRTAP	+	FALSE	LTR16A1	SINE,Alu
chr3	197611262	A	G	0.00208		.	FALSE	AluSx1	SINE,Alu
chr2	217366195	C	A	0.00929		.	FALSE
chr16	23536684	T	C	0.00012	EARS2	-	FALSE
chr9	68413593	C	A	0.00342		.	FALSE
chr4	129795661	A	T	0.00165	JADE1	+	FALSE
chr1	146649854	C	T	0.00033	PDIA3P1	+	FALSE
chr16	74698531	T	C	0.00702	RFWD3	-	TRUE	AluSx3	SINE,Alu
chr16	89630630	C	T	0.00296	RPL13	+	FALSE
chr1	16913612	G	A	0.00581	NBPF1	-	FALSE
chr1	226589958	G	A	0.00613	PARP1	-	FALSE
chr1	20976163	C	T	0.00174	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr3	10192652	A	G	0.00155	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	201846630	C	A	7.51318E-05	IPO9	+	FALSE	(CA)n	SINE,Alu
chr7	48146025	A	G	0.00106	UPP1	+	TRUE	AluSq	SINE,Alu
chr16	1727060	G	A	0.00922	CRAMP1	+	FALSE
chr1	24287616	G	A	0.00218	PNRC2	+	FALSE
chr13	52602919	A	C	0.00117	ALG11,UTP14C	+	FALSE
chr13	31033325	C	A	0.00792	HMGB1	-	FALSE
chr7	17384395	A	G	1.20082E-06	AHR	+	TRUE	AluSx	SINE,Alu
chr1	118066459	A	G	1.18146E-05	MAN1A2	+	FALSE
chr1	110566210	T	A	0.00832	AHCYL1	+	FALSE
chr3	49142142	G	T	6.70614E-05	QARS	-	FALSE
chr2	217366534	A	G	0.00733		.	FALSE	AluSz	SINE,Alu
chr1	231154935	C	T	0.00093	FAM89A	-	FALSE
chrX	123046779	A	G	0.00629	XIAP	+	TRUE	AluSz	SINE,Alu
chr1	67874540	T	C	0.00555	SERBP1	-	FALSE
chr3	182661952	C	T	0.00438	DCUN1D1	-	FALSE	A-rich	SINE,Alu
chr2	61764922	G	C	0.00679	XPO1	-	FALSE
chr1	27874481	C	A	0.00046	AHDC1	-	FALSE
chr1	85785550	C	A	0.00156	DDAH1	-	FALSE
chr3	196662641	T	C	0.00059	NCBP2	-	FALSE
chr1	200521412	G	A	0.00588	KIF14	-	FALSE
chr2	198416735	T	G	0.00257	HSPE1-MOB4,MOB4	+	FALSE
chr1	28826128	A	G	0.00483	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr2	24223256	A	G	0.00711	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr4	17488286	T	G	0.00027	QDPR	-	FALSE
chr2	132049924	A	G	0.00338	LOC440910	+	FALSE	AluSg4	SINE,Alu
chr1	46828700	A	G	0.00095	NSUN4	+	FALSE
chr9	136209396	C	T	0.00126	MED22	-	FALSE
chr1	10520258	T	C	0.00746		.	FALSE	AluSx	SINE,Alu
chr1	28608338	A	G	0.00341	SESN2	+	FALSE
chr1	3806074	G	A	0.00354	C1orf174	-	FALSE	AluSp	SINE,Alu
chr1	16891379	C	T	0.00074	NBPF1	-	FALSE
chr1	145513113	A	G	0.00505	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr9	132266624	A	G	5.52448E-06	LINC00963	+	TRUE	AluSx	SINE,Alu
chr1	65898873	G	C	0.00530	LEPR,LEPROT	+	FALSE
chr15	90819418	A	G	0.00516		.	FALSE	AluSx	SINE,Alu
chr1	145283718	G	A	0.00897	NBPF20,NOTCH2NL	+	FALSE
chr12	54745612	A	G	0.00070	COPZ1	+	FALSE
chr1	52381350	T	G	4.39398E-08	RAB3B	-	FALSE
chr12	98943214	A	G	4.64520E-05	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	146650337	G	T	0.00589	PDIA3P1	+	FALSE
chr1	25168124	G	C	0.00669	CLIC4	+	FALSE
chr5	140564263	C	T	0.00475	PCDHB16	+	FALSE
chr12	125511952	A	G	0.00138	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	63009329	T	G	0.00155	DOCK7	-	FALSE
chr1	109475629	A	G	0.00305	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	32801694	A	C	0.00847	MARCKSL1	-	FALSE
chr15	41597669	A	G	0.00087		.	FALSE	AluSz6	SINE,Alu
chr1	9324213	C	T	0.00063	H6PD	+	FALSE
chr1	24286327	G	A	0.00053	PNRC2	+	FALSE
chr3	48894565	T	A	0.00142	SLC25A20	-	FALSE
chr14	31916782	T	C	4.67250E-05	LOC101927124,DTD2	+,-	FALSE	AluSc8	SINE,Alu
chr6	150046484	T	C	0.00953	NUP43	-	TRUE	AluSq2	SINE,Alu
chr4	156273768	T	C	0.00058	MAP9	-	FALSE
chr1	176176230	G	A	0.00168	RFWD2	-	FALSE
chr2	61277798	A	G	0.00077	PEX13	+	TRUE	AluY	SINE,Alu
chr20	25428384	A	G	0.00195	GINS1	+	TRUE	AluSz	SINE,Alu
chrX	3526659	C	G	0.00188	PRKX	-	FALSE	(AC)n	SINE,Alu
chr1	28861636	G	A	0.00754	RCC1	+	FALSE	(GCATGT)n	SINE,Alu
chr3	10193796	A	G	0.00493	VHL	+	TRUE	AluSx	SINE,Alu
chr5	125961623	A	G	4.58304E-06	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	146467146	A	G	0.00510	NBPF20,NBPF25P,NBPF12	+	TRUE	L1MC4	SINE,Alu
chr1	36068370	T	C	3.60077E-09	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	31423365	G	T	4.32087E-05	CAPN14	-	FALSE
chr3	100083426	C	T	0.00908	TOMM70	-	FALSE	FAM	SINE,Alu
chr1	200375418	C	T	0.00425	ZNF281	-	FALSE
chr1	118167515	C	T	2.81283E-05	FAM46C	+	FALSE
chr1	28661657	A	G	0.00011	MED18	+	TRUE	AluSg	SINE,Alu
chr10	75009921	T	C	0.00639	DNAJC9-AS1,MRPS16	+,-	FALSE	AluY	SINE,Alu
chr5	34908535	T	C	0.00054	RAD1	-	FALSE	AluSp	SINE,Alu
chr2	191745652	A	T	1.16463E-05	GLS	+	FALSE
chr1	20977748	T	G	0.00474	PINK1,PINK1-AS	+,-	FALSE
chr3	66419942	A	G	0.00284	SLC25A26	+	FALSE
chr1	10517672	T	C	0.00090		.	FALSE	AluSx1	SINE,Alu
chr1	145511983	A	G	0.00596	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr19	16661483	T	C	0.00824	SLC35E1	-	TRUE	AluSz	SINE,Alu
chr1	17733270	T	A	0.00088	RCC2	-	FALSE
chr1	153907287	G	C	0.00159	DENND4B	-	FALSE	(CTG)n	SINE,Alu
chr1	52817376	T	C	0.00175	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr1	19199221	C	T	0.00676	ALDH4A1	-	FALSE
chr1	53679610	G	A	0.00119	CPT2	+	FALSE	AluSz	SINE,Alu
chr3	52028445	C	T	0.00934	RPL29	-	FALSE
chr1	111682307	G	C	0.00637	DRAM2,CEPT1	+,-	FALSE
chr6	149912555	G	A	0.00551		.	FALSE
chr1	53289860	A	G	0.00346	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr7	116147752	A	G	0.00031	CAV2	+	FALSE	(AAAAGAAA)n	SINE,Alu
chr1	16893686	G	C	0.00138	NBPF1	-	FALSE
chr3	50686350	T	G	2.12445E-05	MAPKAPK3	+	FALSE
chr1	233086456	T	C	0.00344	NTPCR	+	FALSE
chr12	1086062	G	T	0.00847	RAD52	-	FALSE	L2	SINE,Alu
chr2	17965699	C	T	0.00497	GEN1	+	FALSE	L1M4	SINE,Alu
chr1	144816555	C	T	0.00530	NBPF20,NBPF9	+	FALSE
chr8	41399912	C	A	0.00056	LOC102723729,GINS4	+,-	FALSE	AluSx3	SINE,Alu
chr1	150704483	T	C	0.00028	CTSS	-	TRUE	AluJo	SINE,Alu
chr1	23519504	T	A	3.21384E-05	HTR1D	-	FALSE
chr1	160967938	T	C	0.00270	F11R	-	TRUE	AluSp	SINE,Alu
chr1	40539202	G	A	0.00966	PPT1	-	FALSE
chr10	28971536	A	T	0.00815	BAMBI	+	FALSE
chr1	36068364	T	C	9.25575E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr6	74133913	T	C	0.00439		.	FALSE	AluY	SINE,Alu
chr1	47840938	A	G	0.00089	CMPK1	+	FALSE
chr15	85185502	T	C	0.00058	WDR73,SCAND2P	+,-	FALSE	AluSc	SINE,Alu
chr2	86252136	T	C	0.00015	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr1	33149260	A	G	0.00143	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	79003523	C	G	0.00036	PTGFR	+	FALSE
chr2	37328013	T	C	0.00010		.	FALSE
chr4	42022464	C	A	0.00059	SLC30A9	+	FALSE
chr2	72405098	C	A	0.00646	EXOC6B	-	FALSE
chr1	151092875	A	G	0.00154	GABPB2	+	TRUE	AluSp	SINE,Alu
chr3	194361768	C	T	1.49766E-06	LSG1	-	FALSE	MSTA	SINE,Alu
chr7	144060286	A	G	0.00674	ARHGEF5	+	FALSE
chr1	46075779	A	G	0.00640	NASP	+	TRUE	AluSx4	SINE,Alu
chr2	85772406	G	A	0.00278	GGCX	-	FALSE
chr1	10520378	T	C	8.57705E-06		.	FALSE	AluSx1	SINE,Alu
chr1	10519888	T	C	0.00666		.	FALSE	AluJr	SINE,Alu
chr1	207942456	A	G	0.00322	CD46	+	TRUE	AluSg4	SINE,Alu
chr7	137561077	C	A	0.00995	CREB3L2	-	FALSE
chr1	26144435	C	G	0.00129	SEPN1	+	FALSE
chr1	6283306	T	C	0.00047	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	145375858	T	C	0.00069	NBPF20,NBPF10	+	FALSE
chr1	52378211	T	C	0.00195	RAB3B	-	TRUE	FLAM_C	SINE,Alu
chr2	86248309	T	C	0.00808	LOC90784	-	FALSE
chrX	123045405	A	G	0.00551	XIAP	+	TRUE	AluJo	SINE,Alu
chr1	33148736	A	G	0.00849	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	44818525	T	C	0.00235	ERI3	-	FALSE
chr1	120572572	C	T	0.00084	NOTCH2	-	FALSE
chr3	156259229	T	C	0.00225	SSR3	-	TRUE	AluSq2	SINE,Alu
chr2	233744021	G	A	0.00460	NGEF	-	FALSE
chr2	69688754	T	C	0.00319	AAK1	-	TRUE	AluSq2	SINE,Alu
chr2	31491075	A	G	0.00061	EHD3	+	FALSE
chr1	179843725	T	C	0.00028	TOR1AIP2	-	TRUE	AluJb	SINE,Alu
chr16	10624967	T	C	0.00013	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	145693060	A	G	2.60299E-05	NBPF20,NBPF10	+	TRUE	AluSz6	SINE,Alu
chr1	17199309	G	A	0.00398	LOC440570	+	FALSE
chr3	88191456	C	A	0.00694	CGGBP1,ZNF654	+,-	FALSE
chr1	120612154	C	G	0.00054	NOTCH2	-	FALSE
chr12	124105948	C	T	0.00778	EIF2B1	-	FALSE
chrX	16781275	A	G	0.00417		.	FALSE	AluJo	SINE,Alu
chr3	40503555	A	T	0.00177	RPL14	+	FALSE
chr1	33087433	C	T	0.00687	ZBTB8OS	-	FALSE
chr1	148010973	C	T	0.00045	NBPF8	-	FALSE
chr2	233446568	G	A	0.00900	EIF4E2	+	FALSE
chr21	46353985	A	G	0.00985	LINC01547	-	FALSE	MER5A	SINE,Alu
chr2	206980072	G	A	1.35396E-05		.	FALSE	MLT1A1	SINE,Alu
chr12	125511226	A	G	0.00205	THRIL	-	FALSE	AluSx1	SINE,Alu
chr15	85184841	T	C	0.00016	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr6	170887693	G	C	0.00045	PDCD2	-	FALSE
chr19	39669597	T	C	0.00610	PAK4	+	FALSE	(TG)n	SINE,Alu
chr5	43575009	T	C	0.00498	NNT-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	33149496	A	G	0.00308	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	180082703	C	A	2.04280E-05	CEP350	+	FALSE
chr1	10519048	T	C	0.00728		.	FALSE	AluSx3	SINE,Alu
chr16	29707549	A	G	0.00025	QPRT	+	TRUE	AluJr	SINE,Alu
chr17	48155425	G	A	0.00603	ITGA3	+	FALSE
chr2	206988075	G	A	0.00672	NDUFS1	-	FALSE
chr1	10519936	T	C	0.00354		.	FALSE	AluJr	SINE,Alu
chr1	46164493	T	C	0.00822	IPP	-	TRUE	AluJb	SINE,Alu
chr1	36067817	T	C	0.00938	PSMB2	-	TRUE	AluSz	SINE,Alu
chr4	170678993	T	C	3.15742E-05	HPF1	-	FALSE
chr3	195963395	A	G	0.00028		.	FALSE
chr1	10368093	C	A	0.00131	KIF1B	+	FALSE
chr1	33148045	A	G	0.00264	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr1	118066459	A	G	0.00729	MAN1A2	+	FALSE
chr4	17803026	T	C	0.00396	DCAF16	-	TRUE	AluSz	SINE,Alu
chr2	204301753	T	A	0.00012	RAPH1	-	FALSE
chr8	144940794	G	C	0.00038	EPPK1	-	FALSE
chr1	93307479	C	A	0.00019	FAM69A,RPL5	+,-	FALSE
chr2	208619377	A	G	0.00769	CCNYL1	+	TRUE	FAM	SINE,Alu
chr1	43391823	C	T	0.00718	SLC2A1	-	FALSE
chr16	81744038	T	C	6.34278E-05	CMIP	+	FALSE	(CCGC)n	SINE,Alu
chr1	67874689	T	C	0.00338	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr17	42876738	T	C	0.00481	GJC1	-	TRUE	AluSz6	SINE,Alu
chr19	19792448	A	G	0.00416	ZNF101	+	TRUE	AluJb	SINE,Alu
chr8	144940798	T	C	0.00255	EPPK1	-	FALSE
chr16	19715588	T	C	0.00063		.	FALSE	AluSg	SINE,Alu
chr7	44047381	G	A	0.00912	POLR2J4,SPDYE1	+,-	FALSE
chr1	1252443	T	C	0.00392	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr5	37290336	T	C	0.00036		.	FALSE	AluSz	SINE,Alu
chr2	120439459	C	A	0.00273	TMEM177	+	FALSE
chr1	3546269	C	A	0.00260	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr1	11084103	T	A	0.00162	TARDBP	+	FALSE
chr1	146649884	T	A	0.00338	PDIA3P1	+	FALSE
chr1	160966376	T	C	0.00996	F11R	-	TRUE	AluSg	SINE,Alu
chr19	11257634	T	C	0.00237	SPC24	-	TRUE	AluSp	SINE,Alu
chr3	183861243	A	G	0.00049	EIF2B5	+	FALSE
chr5	70248478	G	A	0.00229	SMN1,SMN2	+	FALSE	L1MC5a	SINE,Alu
chr1	32374019	G	A	0.00297	PTP4A2	-	FALSE
chr1	38275432	G	T	0.00057	MTF1	-	FALSE
chr1	6582558	T	C	0.00479	NOL9	-	TRUE	AluSx1	SINE,Alu
chr4	177252238	A	G	3.85736E-09	SPCS3	+	TRUE
chr19	9672346	T	C	0.00222		.	FALSE	AluJr	SINE,Alu
chr1	197093361	G	A	8.55632E-06	ASPM	-	FALSE
chr1	92862804	A	G	0.00043		.	FALSE	AluJr	SINE,Alu
chr1	20977599	C	G	0.00489	PINK1,PINK1-AS	+,-	FALSE
chr1	204524400	A	G	0.00029	MDM4	+	TRUE	AluY	SINE,Alu
chr6	109001948	G	A	0.00030	FOXO3	+	FALSE	(A)n	SINE,Alu
chr1	241796950	C	A	1.24743E-05	OPN3,CHML	-	FALSE
chr5	37290413	T	C	0.00467		.	FALSE	AluSz	SINE,Alu
chr4	185309400	T	A	0.00250	IRF2	-	FALSE	(GGGAT)n	SINE,Alu
chr4	169847647	A	T	0.00328	PALLD	+	FALSE
chr1	114940228	C	T	0.00559	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	158067059	A	C	0.00655	KIRREL	+	FALSE
chr1	16958064	A	G	0.00446		.	FALSE
chr1	36529582	A	G	0.00476		.	FALSE	AluJr	SINE,Alu
chr4	2940371	T	C	0.00150	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr17	76799795	G	A	0.00363	USP36	-	FALSE
chr1	1419768	A	G	0.00250	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr9	124103030	G	A	0.00193	STOM	-	FALSE	AluSq2	SINE,Alu
chr1	28904397	C	G	0.00125	TRNAU1AP	+	FALSE
chr1	6283418	T	C	0.00464	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	1337735	T	G	3.46713E-05	MRPL20	-	FALSE
chr1	8930561	T	G	0.00913	ENO1	-	FALSE
chr10	60047609	A	G	0.00979	CISD1	+	FALSE	(A)n	SINE,Alu
chr2	130900880	C	T	0.00044	CCDC74B	-	FALSE
chr2	128061053	A	G	0.00184	MAP3K2	-	FALSE
chr5	96129512	A	G	0.00997	ERAP1	-	FALSE
chr1	179044180	A	G	0.00416	FAM20B	+	TRUE	AluSx	SINE,Alu
chr3	37317605	A	G	9.02711E-05	GOLGA4	+	FALSE
chr1	49227052	A	T	0.00020	AGBL4,BEND5	-	FALSE
chr1	1593857	T	C	0.00217	CDK11B,SLC35E2B	-	FALSE
chr5	41917695	C	T	0.00546	C5orf51	+	FALSE
chr1	16958064	A	G	0.00240		.	FALSE
chr3	137787192	T	C	0.00764	DZIP1L	-	FALSE
chr12	7175047	A	G	0.00634	C1S	+	FALSE
chr3	42594019	C	T	3.51223E-05	SEC22C	-	FALSE
chr1	230416414	T	G	0.00360	GALNT2	+	FALSE

RBP	PUM2
Knock-Method	siRNA
RBP Family	PUF
Biosample Name	TCam-2
Tissue Type	Testicular Germ
Biosample Type	Cell line
# of Control	3
# of Treat	3
Species	Human
Data Source	GEO
Profile ID	GSE123016
Platform	GPL20301
Pubmed ID	32316190

PUM2 - Target Gene Network