Dataset Overview
RBPLARP7
Knock-MethodsiRNA
RBP FamilyRRM_3
Biosample NameMDA-MB-231
Tissue TypeBreast
Biosample TypeCell line
# of Control1
# of Treat1
SpeciesHuman
Data SourceGEO
Profile IDGSE124394
PlatformGPL20301
Pubmed ID-

LARP7 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of LARP7
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of LARP7


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr1241796948TC0.00082OPN3,CHML-FALSE
chr128834154GT0.00012SNHG3,RCC1+FALSEAluSgSINE,Alu
chr369154343CG0.00408ARL6IP5+FALSE
chr1474526154TC0.00030BBOF1,ALDH6A1+,-FALSEAluSpSINE,Alu
chr19162362TC0.00526.FALSEAluSxSINE,Alu
chr1760522250AG0.00267METTL2A+FALSE
chr1116237273AG0.00814VANGL1+FALSE
chr3195435168TG0.00111LINC00969+FALSE
chr1197093361GA8.55632E-06ASPM-FALSE
chr1539880822AG0.00281THBS1+FALSE
chr246414708GA0.00155PRKCE+FALSE
chr199672919TC0.00097.FALSEAluSx3SINE,Alu
chr110517290TC0.00119.FALSEAluJrSINE,Alu
chr16614230GA0.00509NOL9-FALSE
chr128864731AG0.00477RCC1+FALSE
chr1589803950CT0.00698FANCI+FALSE
chrX152916230AC1.62471E-05DUSP9+FALSE
chr613790964TC5.10728E-05MCUR1-TRUEAluSx1SINE,Alu
chr2222050366TC0.00449PPIL2+FALSEMER5ASINE,Alu
chr211318235GC0.00911PQLC3+FALSE
chr19161218TC0.00581.FALSEAluSxSINE,Alu
chr3197362030CT0.00302.FALSE
chr1142804471CG0.00555.FALSEMIRbSINE,Alu
chr121602602AG8.31525E-05ERC1+FALSEAluSxSINE,Alu
chr1100489452AG0.00741SLC35A3+TRUEAluScSINE,Alu
chr133147934AG0.00251SYNC,RBBP4+,-FALSEAluSxSINE,Alu
chr3100467676AT0.00067TFG+FALSE
chr138326728TC0.00399INPP5B-TRUEAluJrSINE,Alu
chr7100958270TC0.00087LOC101927746,IFT22+,-FALSE
chr2203741602TC0.00581.FALSEAluJrSINE,Alu
chr12335871GA0.00298RER1+FALSE
chr634231301GC0.00772.FALSE
chr132801724TG0.00816MARCKSL1-FALSE
chr357551513AG0.00037PDE12+TRUEAluScSINE,Alu
chr1745761102TG0.00296.FALSE
chr140213628AG0.00058PPIE+TRUEFRAMSINE,Alu
chr12125269489CT0.00817SCARB1-FALSE
chr128826085AG0.00281PHACTR4+TRUEAluJbSINE,Alu
chr116890639CT5.60894E-05NBPF1-FALSE
chr1210004332GA0.00813DIEXF+FALSE
chr9132268942AG0.00104LINC00963+TRUEAluYf1SINE,Alu
chr1419686757AG0.00565DUXAP10+FALSE
chr110517273TC0.00583.FALSEAluJrSINE,Alu
chr3101579158AG0.00022NFKBIZ+FALSEAluJoSINE,Alu
chr140539211AT0.00105PPT1-FALSE
chr195658346TA0.00961TMEM56-RWDD3,LOC101928118,TMEM56+,-FALSE
chr11124954212CA0.00827SLC37A2+FALSE
chr1949472GA9.07885E-12ISG15+FALSE
chr12125267857TC0.00702SCARB1-TRUEFRAMSINE,Alu
chr1142804438GT0.00618.FALSE
chr41387223AG0.00155CRIPAK+TRUEAluSxSINE,Alu
chr2114220055TC9.23000E-05CBWD2+FALSE
chr3124948049TC0.00709ZNF148-TRUE
chr121102501GA0.00148HP1BP3-FALSE
chr1531231255AG0.00027FAN1,MTMR10+,-FALSE
chr2233446266CT0.00177EIF4E2+FALSE
chr140537942AC0.00955CAP1+FALSE(A)nSINE,Alu
chr128825337AG0.00191PHACTR4+TRUEAluSgSINE,Alu
chr1204521239AG0.00095MDM4+TRUEAluSpSINE,Alu
chr46689813CA0.00141.FALSEL2bSINE,Alu
chr116939857CT0.00091NBPF1-FALSE
chr1666923452AG0.00065PDP2+TRUEAluSzSINE,Alu
chr119684006GC0.00396CAPZB-FALSE
chr2174086933CA0.00457ZAK,MLK7-AS1+,-FALSEAluJoSINE,Alu
chr1115313051TC0.00853SIKE1-FALSE
chr2128949255AG0.00063UGGT1+TRUEAluSgSINE,Alu
chr211321778GT0.00402ROCK2-FALSEAluSx1SINE,Alu
chr1773886219TC8.52474E-05TRIM65-TRUEFRAMSINE,Alu
chr145242978AG0.00604RPS8+TRUEAluSzSINE,Alu
chr1148561089TC0.00975NBPF15+FALSE
chr193297607CT0.00016RPL5+FALSE
chr136534934AG0.00464.FALSEAluJoSINE,Alu
chr442088291CA0.00000SLC30A9+FALSE
chr110517290TC0.00437.FALSEAluJrSINE,Alu
chr119542250TC3.30618E-05LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr457326879AG0.00198PAICS+TRUEAluSx1SINE,Alu
chr59546451GA0.00030SNHG18+FALSE
chr996438974CG0.00303PHF2+FALSE(CTCCAC)nSINE,Alu
chr13371371CG0.00844ARHGEF16+FALSE
chrX54587254AG0.00019GNL3L+TRUEAluSq2SINE,Alu
chr373024350CA0.00109GXYLT2+FALSE
chr145671429GA0.00054ZSWIM5-FALSE
chr116946266GC0.00750CROCCP2-FALSEMIRbSINE,Alu
chr168940887TG0.00293DEPDC1-FALSEMIRSINE,Alu
chr4129796173GT1.40481E-05JADE1+FALSE
chr145975345AG0.00357MMACHC+TRUEAluSg7SINE,Alu
chr1180247476TC0.00890.FALSE
chr1610623571TC0.00329EMP2-TRUEAluSpSINE,Alu
chr136067858GA0.00293PSMB2-FALSEAluSzSINE,Alu
chr124796838AG0.00484NIPAL3+FALSEMER5ASINE,Alu
chr2132049924AG0.00338LOC440910+FALSEAluSg4SINE,Alu
chr1214529247TC0.00233PTPN14-TRUE
chr2234386134AG0.00196USP40-FALSE
chr11572530AC0.00425CDK11B-FALSE
chr152817399TC0.00346CC2D1B-TRUEAluSg4SINE,Alu
chr254120820GA0.00262PSME4-FALSE
chr158999651TG0.00980OMA1-FALSE
chr135650022CA0.00762SFPQ-FALSE
chr2191745647CT2.95764E-05GLS+FALSE
chr339138082CT8.26379E-05WDR48+FALSE
chr1646614656TA0.00565SHCBP1-FALSE
chr287883323AG0.00910.FALSE
chr110521237TC0.00200DFFA-TRUEAluYSINE,Alu
chr2170497651CT0.00195.FALSE
chr165134599GC0.00355ALG1,EEF2KMT+,-FALSE
chr1628620957TC0.00753SULT1A1-TRUEAluJrSINE,Alu
chr3197611048AG0.00064.FALSEAluSx1SINE,Alu
chr8143352206TC0.00500TSNARE1-FALSE
chr116889642TC6.70250E-05NBPF1-TRUE
chr2161130868AC0.00297RBMS1-FALSE
chr1160967857TC0.00032F11R-TRUEAluSpSINE,Alu
chr1168523338TC0.00817CPT1A-TRUEAluSqSINE,Alu
chr1590819472AG0.00068.FALSEAluSxSINE,Alu
chr425749192CT0.00642SEL1L3-FALSE
chr3122283293CG0.00071DTX3L,PARP9+,-FALSE
chr189447839CG3.35704E-05KYAT3,RBMXL1-FALSE
chr128930023GA5.17411E-07TAF12-FALSE
chr1212534448TC0.00926PPP2R5A+FALSE
chr110520487TC0.00638.FALSEAluSx1SINE,Alu
chr1145512024AG0.00836NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr138001685TC0.00050SNIP1-TRUEAluSxSINE,Alu
chr1156613401TC5.47226E-05BCAN+FALSE
chr4155457051AT0.00378PLRG1-FALSEL2d2SINE,Alu
chr2174090339AC2.67746E-05ZAK,MLK7-AS1+,-FALSEAluSxSINE,Alu
chr1757656854CT0.00928DHX40+FALSE
chr41205668CA0.00132CTBP1-AS,CTBP1+,-FALSE(A)nSINE,Alu
chr237331221TC1.68149E-05.FALSEAluSx1SINE,Alu
chr6107113955AG0.00265QRSL1+TRUEAluSgSINE,Alu
chr1075008965TC0.00017DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr417803537TC7.44979E-05DCAF16-TRUEAluYSINE,Alu
chr540832553AT9.00390E-07RPL37-FALSE
chr161411034AG0.00322GNPTG+TRUEAluSzSINE,Alu
chr122400702TC0.00883CDC42+FALSEAluSc8SINE,Alu
chr1615023271GA0.00403.FALSE
chr5150869672AT0.00755SLC36A1+FALSE
chr5180663940AG0.00331RACK1-FALSE
chr315114293TC2.60553E-05RBSN-TRUEAluYSINE,Alu
chr133148196AG0.00303SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr167874689TC0.00896SERBP1-TRUEAluSx3SINE,Alu
chr125893928TA0.00388LDLRAP1+FALSE
chr124798498CT0.00131NIPAL3+FALSE
chr1272096318AG0.00547TMEM19+TRUEAluSz6SINE,Alu
chr1143398850GT0.00639.FALSE
chr8141461185AG0.00793TRAPPC9-FALSE
chr3172115902GA9.15134E-06FNDC3B+FALSE
chr133149414AG5.81443E-05SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr120977533GC0.00234PINK1,PINK1-AS+,-FALSE
chr142881767GC0.00437RIMKLA+FALSE
chr175175886TC0.00880CRYZ-FALSE
chr114604AG0.00304WASH7P-FALSE
chr1495555551CT0.00404DICER1-FALSE
chr2178482698AG0.00408TTC30A-FALSE
chr240336210CT0.00828SLC8A1-AS1+FALSE
chr120976075TC0.00135PINK1,PINK1-AS+,-FALSEAluSzSINE,Alu
chr1450713578TC0.00260L2HGDH-TRUEAluSxSINE,Alu
chr5130537154AG0.00951LYRM7+TRUEAluSpSINE,Alu
chr3195635455TC0.00158TNK2-FALSE
chr146075188CA0.00199NASP+FALSEA-richSINE,Alu
chr729962665CT0.00059SCRN1-FALSE
chr136530674AG0.00603.FALSEAluSgSINE,Alu
chr1610625460TC0.00015EMP2-TRUEAluSxSINE,Alu
chr541917720TG0.00727C5orf51+FALSE
chr5137354051CT0.00098FAM13B-FALSE
chr140306898TC0.00384TRIT1-FALSE
chr595222277CT0.00599ELL2-FALSE
chr16282259TC0.00072ICMT-TRUEAluSzSINE,Alu
chr4190883001CG0.00319FRG1+FALSE
chr572801323CA0.00240BTF3+FALSE
chr275118856TC1.43220E-05HK2+FALSE(ATTTTA)nSINE,Alu
chr1231154935CT0.00093FAM89A-FALSE
chr1120164994CT0.00829ZNF697-FALSE
chr1082192266AG0.00391FAM213A+TRUEAluSx1SINE,Alu
chr136770950AG0.00118THRAP3+FALSE
chr439550967TC2.19217E-06UGDH-AS1,SMIM14+,-FALSEAluSzSINE,Alu
chr114143003AG0.00028PRDM2+FALSE
chr19160866CA0.00907.FALSE
chr3176739663AG5.46505E-07TBL1XR1-FALSE
chr730825575CA0.00101INMT-FAM188B,FAM188B+FALSE
chr16354955GA0.00282ACOT7-FALSE
chr1193474585TG0.00531TAF1D-FALSE
chr3196728813CT0.00068MELTF-FALSE
chr11717473AC0.00925GNB1-FALSE
chr146774813CG0.00766UQCRH+FALSE
chr275118737CT0.00154HK2+FALSE
chr11458255TG0.00438ATAD3A+FALSE
chr128661653AG0.00053MED18+TRUEAluSgSINE,Alu
chr1109856085GA0.00684SORT1-FALSE
chr1298942643AG3.59360E-06TMPO+TRUEAluScSINE,Alu
chrX54587249AG0.00769GNL3L+TRUEAluSq2SINE,Alu
chr165330637CT0.00047JAK1-FALSE
chr127992823AC0.00087IFI6-FALSEFAMSINE,Alu
chr16283332TC6.58989E-06ICMT-TRUEAluSx3SINE,Alu
chr826435508CT0.00106DPYSL2+FALSE(TC)nSINE,Alu
chr237328100TC0.00027.FALSE
chr340503772TA0.00153RPL14+FALSE
chr110043053AG0.00318NMNAT1+TRUEAluScSINE,Alu
chr291805928TC0.00000.FALSEMLT1H1SINE,Alu
chr7137561084GA0.00194CREB3L2-FALSE(GT)nSINE,Alu
chr4183721749GA0.00324TENM3+FALSE
chr13730400TC0.00800CEP104-TRUEAluSx3SINE,Alu
chr1165764473CG0.00403EIF1AD-FALSEAluSz6SINE,Alu
chr593018883AT0.00181FAM172A-FALSE(TCA)nSINE,Alu
chr144459935TC0.00953CCDC24+FALSEAluJbSINE,Alu
chr6150047370TC0.00154NUP43-TRUEAluScSINE,Alu
chr126143727AT0.00917SEPN1+FALSEAluSxSINE,Alu
chr417804879TC0.00863DCAF16-TRUEAluSxSINE,Alu
chr128825465AG0.00756PHACTR4+TRUEAluSgSINE,Alu
chr167874540TC0.00555SERBP1-FALSE
chr2174773510TA0.00775SP3-FALSEA-richSINE,Alu
chr116952896GA2.20079E-06CROCCP2-FALSE
chr147843356AT0.00556CMPK1+FALSE
chr1144868170CT0.00750NBPF20,PDE4DIP+,-FALSE
chr119542250TC0.00859LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1240255561GA0.00224FMN2+FALSE(GGC)nSINE,Alu
chr1165065251AG0.00580POLA2+TRUEAluYSINE,Alu
chr11647893CT0.00509CDK11B,CDK11A-FALSE
chr1155142927AG0.00877KRTCAP2-FALSE
chr255516937GT0.00250CCDC88A-FALSE(GA)nSINE,Alu
chr110093371CT0.00264UBE4B+FALSE
chr1942731991AG0.00598.FALSEAluJrSINE,Alu
chr116889864CA0.00063NBPF1-FALSE
chr1145689533AG0.00051NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr128825370AG0.00617PHACTR4+TRUEAluSgSINE,Alu
chr314986133TC1.90274E-11FGD5-AS1-TRUEFLAM_CSINE,Alu
chr540828060TC0.00253LOC100506548-FALSE
chr1169101270TG0.00036ATP1B1+FALSE(T)nSINE,Alu
chr1212277581CT4.20326E-05DTL+FALSE
chr1179326295AG0.00035SOAT1+TRUE
chr1150594611GT0.00329ENSA-FALSE
chr16283558AT0.00624ICMT-FALSE
chr128566461TC1.61071E-05.FALSEAluSx1SINE,Alu
chr5134260212CT0.00264PCBD2+FALSE
chr195362949AT0.00114CNN3-FALSE(A)nSINE,Alu
chr232447868AG0.00663SLC30A6+FALSE
chr19163402TC0.00014.FALSEAluSpSINE,Alu
chr5133738270TC5.55380E-10CDKN2AIPNL-TRUEFRAMSINE,Alu
chr457326126AG0.00790PAICS+TRUEAluJrSINE,Alu
chr116768088GA0.00063NECAP2+FALSE
chr237331038TC4.65669E-05.FALSEAluSx1SINE,Alu
chr119542310TC0.00510LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr19740895AT0.00136PIK3CD,PIK3CD-AS2+,-FALSEMLT1F1SINE,Alu
chr1100549715TA0.00765SASS6-FALSE
chr299812843AG0.00966MRPL30+TRUEAluJbSINE,Alu
chr1142688506TC4.54862E-05.FALSE
chr128835934AG0.00193SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr717384437AG0.00192AHR+TRUEAluSxSINE,Alu
chr11647871TC7.46571E-06CDK11B,CDK11A-FALSE
chr1180247483TC0.00167.FALSE
chr1120611964GC0.00130NOTCH2-FALSE
chr4139966801AG0.00282NOCT+TRUEAluYj4SINE,Alu
chr1179077613TC0.00731ABL2-FALSE
chr3124950418TA0.00039ZNF148-FALSE
chr1619715588TC0.00063.FALSEAluSgSINE,Alu
chr23592638TC0.00164RNASEH1-TRUEAluSz6SINE,Alu
chr10117823568TA0.00483GFRA1-FALSE(ATC)nSINE,Alu
chr1118502087CT0.00585WDR3,SPAG17+,-FALSE
chr232532809AG0.00255.FALSEAluSx1SINE,Alu
chr11417974CT0.00677ATAD3B+FALSE
chr438946481AG0.00168FAM114A1+FALSEMER1BSINE,Alu
chr297494866CT0.00069CNNM3+FALSE
chr136770607TC0.00171THRAP3+FALSE(T)nSINE,Alu
chr261277775AG0.00640PEX13+TRUEAluYSINE,Alu
chr12133635613TC0.00024.FALSE
chr2152334421AG0.00464.FALSEAluSqSINE,Alu
chr1153909069GC5.11201E-05DENND4B-FALSE
chr344485914TC0.00920ZNF445-FALSEMIRbSINE,Alu
chr286250013TC0.00867LOC90784-TRUEAluSxSINE,Alu
chr187379497AG0.00067SEP15-FALSE
chr2202252539GA0.00293TRAK2-FALSE
chr1242011534AG0.00248EXO1+FALSE
chr425253995CT9.95051E-10PI4K2B+FALSE
chr8144357992AG0.00780GLI4+FALSE
chr729962666TA0.00077SCRN1-FALSE
chr146049716TG0.00761NASP+FALSE
chr3195411239AC5.03065E-05SDHAP2+FALSE
chr1180082702GC0.00019CEP350+FALSE
chr227293351CT0.00314AGBL5,OST4+,-FALSE
chr417804740TC0.00015DCAF16-TRUEAluSxSINE,Alu
chr13697486CG0.00110LRRC47-FALSEAluScSINE,Alu
chr1144881463CT0.00147NBPF20,PDE4DIP+,-FALSE
chr1164084160CT0.00895ESRRA,TRMT112+,-FALSE
chr344791569TC0.00685KIAA1143-TRUEAluJrSINE,Alu
chr133071146AG0.00899ZBTB8A+TRUEAluSx1SINE,Alu
chr1431916792CT3.89824E-05LOC101927124,DTD2+,-FALSEAluSc8SINE,Alu
chr136032229AC0.00806NCDN+FALSE
chr12335348CT0.00018RER1+FALSE
chr613790822TC0.00885MCUR1-TRUEAluSx1SINE,Alu
chr1118068558GA0.00876.FALSE
chr136068237TC0.00054PSMB2-TRUEAluScSINE,Alu
chr117199259GA0.00217LOC440570+FALSE
chr154691906CG0.00465SSBP3-FALSE
chr1109818161CT0.00382CELSR2+FALSE
chr1423794557TA0.00983BCL2L2-PABPN1,PABPN1+FALSEA-richSINE,Alu
chr1688785189TC0.00636PIEZO1-TRUEAluJrSINE,Alu
chr258316814AG0.00257VRK2+FALSE
chr2204162036AG0.00369CYP20A1+TRUEAluSxSINE,Alu
chr116958064AG0.00240.FALSE
chr128835847AG4.14471E-06SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr154692358GA0.00195SSBP3-FALSE
chr136068052GT1.69686E-12PSMB2-FALSEL1ME4bSINE,Alu
chr119542631TC0.00741LOC101927895,EMC1+,-FALSEFRAMSINE,Alu
chr848890109AG0.00750MCM4+TRUEAluJbSINE,Alu
chr1474526976TC0.00469BBOF1,ALDH6A1+,-FALSEAluJoSINE,Alu
chr349571462GT0.00032DAG1+FALSE
chr119542301TC0.00032LOC101927895,EMC1+,-FALSEAluSzSINE,Alu

Differential Expression Gene Analysis