Dataset Overview
RBP
LARP7
Knock-Method
siRNA
RBP Family
RRM_3
Biosample Name
MDA-MB-231
Tissue Type
Breast
Biosample Type
Cell line
# of Control
1
# of Treat
1
Species
Human
Data Source
GEO
Profile ID
GSE124394
Platform
GPL20301
Pubmed ID
-
LARP7 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of LARP7
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
AC090186.1
1.92
7.11
1.84288
0.04661
1.00000
ADM5
3.01
0.76
-1.98595
0.03350
1.00000
CDC25C
3.94
13.86
1.82171
0.03684
1.00000
CSNK2B-LY6G5B-1181
14.18
1.87
-2.94071
0.00126
1.00000
EIF3CL
7.84
40.37
2.35997
0.00714
1.00000
FAM72C
1.14
5.45
2.23407
0.01561
1.00000
GJA1
2.31
8.09
1.80282
0.03805
1.00000
IKBKGP1
2.88
11.11
1.92224
0.03075
1.00000
MINOS1-NBL1
1.46
9.69
2.70989
0.00410
1.00000
PVRIG2P
1.71
7.72
2.13755
0.02025
1.00000
Showing 1 to 10 of 20 entries
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Function Analysis of Target Genes of LARP7
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A1BG-AS1
58864686_58864840_58859116_58859210_58865079_58865223
0.00261
-0.667
DataSet_02_38
View details
AAMDC
77542937_77543058_77532187_77532287_77552064_77552301
0.00248
-0.413
DataSet_02_38
View details
AAMDC
77552064_77552106_77532174_77532287_77553524_77553674
0.00070
0.422
DataSet_02_38
View details
AAMDC
77580767_77580863_77553524_77553674_77583220_77583398
0.00689
-0.338
DataSet_02_38
View details
AASS
121721553_121721649_121718915_121719766_121726065_121726233
0.00115
0.637
DataSet_02_38
View details
ABCB9
123425353_123425542_123423995_123424831_123428937_123429066
0.00393
-0.294
DataSet_02_38
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ABCD4
74759856_74759951_74759450_74759572_74761850_74761901
0.00011
-0.836
DataSet_02_38
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ABCD4
74759856_74760013_74759450_74759572_74761850_74761901
0.00055
-0.667
DataSet_02_38
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ABCD4
74764341_74764772_74763035_74763152_74766852_74766971
0.00000
-1.0
DataSet_02_38
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ABCD4
74764632_74764772_74763035_74763152_74766852_74766971
0.00007
-0.857
DataSet_02_38
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Showing 1 to 10 of 2,227 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC005154.1
30616179_30616326_30618621_30618744_30608448_30608605
0.00113
-0.56
DataSet_02_38
View details
AC010619.2
49982165_49982304_49983554_49983733_49979679_49979823
0.00031
-0.6
DataSet_02_38
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AC068152.1
45112409_45112492_45131483_45131579_45110643_45110747
0.00116
-0.414
DataSet_02_38
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AC093157.1
101540831_101540950_101540950_101541272_101538215_101538386
0.00034
-0.79
DataSet_02_38
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AC107983.2
18424392_18424459_18427090_18427191_18422795_18422988
0.00008
-1.0
DataSet_02_38
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ACP1
272036_272150_272191_272305_271865_271939
0.00116
-0.202
DataSet_02_38
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AL645922.1
31912954_31912963_31914149_31914383_31912503_31912630
0.00263
-0.614
DataSet_02_38
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ALDH7A1
125918542_125918666_125919623_125919704_125912770_125912903
0.00546
-0.625
DataSet_02_38
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ALG9
111724371_111724459_111728324_111728460_111724102_111724208
0.00002
-1.0
DataSet_02_38
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ANKMY1
241448764_241448872_241451277_241451418_241446976_241447108
0.00836
-0.527
DataSet_02_38
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Showing 1 to 10 of 191 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCD4
74764341_74764772_74764632_74764772_74763035_74763152
0.00001
-1.0
DataSet_02_38
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ABHD3
19243638_19244191_19244078_19244191_19239130_19239304
0.00289
0.209
DataSet_02_38
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ABTB1
127393233_127393296_127393233_127393261_127393387_127393443
0.00001
1.0
DataSet_02_38
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AC009948.1
179291092_179291388_179291092_179291232_179295496_179295616
0.00090
-0.673
DataSet_02_38
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AC009948.1
179291092_179291430_179291092_179291232_179295496_179295616
0.00528
-0.59
DataSet_02_38
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AC009948.1
179291092_179291430_179291092_179291388_179295496_179295616
0.00003
1.0
DataSet_02_38
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AC107983.2
18426964_18427191_18427090_18427191_18422795_18422988
0.00004
1.0
DataSet_02_38
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ACTG1
79479640_79479806_79479759_79479806_79479257_79479386
0.00672
0.229
DataSet_02_38
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ACTR6
100599453_100599535_100599453_100599522_100601440_100601564
0.00002
-1.0
DataSet_02_38
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AFTPH
64806619_64808407_64806619_64806680_64812555_64812679
0.00083
-0.15
DataSet_02_38
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Showing 1 to 10 of 332 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AAAS
53709118_53709270_53709118_53709210_53709510_53709566
0.00608
-0.342
DataSet_02_38
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AARSD1
41114191_41114312_41114191_41114289_41116122_41116254
0.00004
1.0
DataSet_02_38
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ABCF3
183905151_183905231_183905184_183905231_183904583_183904663
0.00011
0.476
DataSet_02_38
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AC005154.1
30603346_30603614_30603346_30603509_30608448_30608605
0.00994
-0.47
DataSet_02_38
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AC005562.1
28937906_28937960_28937911_28937960_28935447_28935580
0.00173
0.407
DataSet_02_38
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AC020915.6
58758076_58758160_58758111_58758160_58757666_58757793
0.00059
-0.385
DataSet_02_38
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AC024592.3
5896463_5896661_5896463_5896586_5896915_5897008
0.00001
0.13
DataSet_02_38
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AC087289.3
73897792_73898001_73897792_73897997_73898100_73898235
0.00002
-1.0
DataSet_02_38
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ACADVL
7124837_7125001_7124856_7125001_7124242_7124377
0.00046
0.227
DataSet_02_38
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ACCS
44094893_44095067_44094996_44095067_44092805_44092865
0.00007
0.841
DataSet_02_38
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Showing 1 to 10 of 480 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AASS
121718915_121719766_121718915_121719004_121719650_121719766
0.00036
0.693
DataSet_02_38
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ABHD16A
31655817_31656082_31655817_31655880_31656025_31656082
0.00039
0.324
DataSet_02_38
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ABHD16A
31656499_31656896_31656499_31656563_31656791_31656896
0.00009
-0.718
DataSet_02_38
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AC023490.1
20379802_20380063_20379802_20379875_20380022_20380063
0.00001
-1.0
DataSet_02_38
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ACADVL
7127639_7127871_7127639_7127712_7127802_7127871
0.00711
-0.095
DataSet_02_38
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ACBD4
43213474_43214143_43213474_43213599_43213866_43214143
0.00009
-0.632
DataSet_02_38
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ACTR10
58690339_58690574_58690339_58690419_58690500_58690574
0.00086
0.615
DataSet_02_38
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ACY1
52020620_52021469_52020620_52020677_52021003_52021469
0.00007
1.0
DataSet_02_38
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ADA
43248939_43249788_43248939_43249042_43249658_43249788
0.00048
0.667
DataSet_02_38
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AKAP8L
15514285_15514526_15514285_15514366_15514468_15514526
0.00055
-0.499
DataSet_02_38
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
241796948
T
C
0.00082
OPN3,CHML
-
FALSE
chr1
28834154
G
T
0.00012
SNHG3,RCC1
+
FALSE
AluSg
SINE,Alu
chr1
9162362
T
C
0.00526
.
FALSE
AluSx
SINE,Alu
chr1
116237273
A
G
0.00814
VANGL1
+
FALSE
chr1
197093361
G
A
8.55632E-06
ASPM
-
FALSE
chr1
10517290
T
C
0.00119
.
FALSE
AluJr
SINE,Alu
chr1
6614230
G
A
0.00509
NOL9
-
FALSE
chr1
28864731
A
G
0.00477
RCC1
+
FALSE
chr1
9161218
T
C
0.00581
.
FALSE
AluSx
SINE,Alu
chr1
142804471
C
G
0.00555
.
FALSE
MIRb
SINE,Alu
Showing 1 to 10 of 305 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression