Dataset Overview
RBP
LARP7
Knock-Method
siRNA
RBP Family
RRM_3
Biosample Name
HCC1937
Tissue Type
Breast
Biosample Type
Cell line
# of Control
1
# of Treat
1
Species
Human
Data Source
GEO
Profile ID
GSE124395
Platform
GPL20301
Pubmed ID
-
LARP7 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of LARP7
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
AL034548.1
0.73
3.54
2.08788
0.02148
1.00000
APPBP2
3.15
10.67
1.78175
0.04163
1.00000
BBS10
0.5
2.12
1.89347
0.03551
1.00000
BRCA1
2.68
9.03
1.93914
0.02589
1.00000
BRCA2
0.21
1.44
2.11693
0.01860
1.00000
CDH16
2.24
0.66
-1.87178
0.04069
1.00000
CDKN1C
13.41
3.52
-2.12964
0.01575
1.00000
CENPE
3.85
8.21
1.69818
0.04869
1.00000
CTD-2207O23.12
107.44
35.87
-1.83148
0.03641
1.00000
DCLRE1A
1.15
4.36
1.80095
0.04369
1.00000
Showing 1 to 10 of 32 entries
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Function Analysis of Target Genes of LARP7
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AASDH
57248642_57248763_57244313_57244630_57253527_57253589
0.00046
0.768
DataSet_02_39
View details
ABCA2
139904644_139904823_139904434_139904576_139905071_139905189
0.00227
-0.667
DataSet_02_39
View details
ABCC1
16180680_16180848_16173208_16173335_16184261_16184445
0.00000
1.0
DataSet_02_39
View details
ABCC10
43398485_43398604_43395705_43395877_43399879_43399914
0.00546
0.16
DataSet_02_39
View details
ABHD11
73152205_73152402_73151897_73152065_73152657_73152793
0.00280
-0.4
DataSet_02_39
View details
ABHD14B
52005827_52005908_52005475_52005714_52007980_52008065
0.00389
0.406
DataSet_02_39
View details
ABHD4
23072829_23072984_23072294_23072667_23075327_23075439
0.00094
-0.545
DataSet_02_39
View details
ABLIM1
116213137_116213242_116211382_116211430_116225456_116225586
0.00007
-1.0
DataSet_02_39
View details
ABLIM1
116233637_116233715_116232735_116232891_116247716_116247752
0.00777
-0.559
DataSet_02_39
View details
ABLIM3
148578606_148578685_148577781_148577965_148579878_148579991
0.00105
-0.613
DataSet_02_39
View details
Showing 1 to 10 of 1,808 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACOX1
73956295_73956456_73969705_73969866_73953539_73953647
0.00686
0.19
DataSet_02_39
View details
ACOXL
111789203_111789291_111806794_111806865_111753469_111753581
0.00008
-1.0
DataSet_02_39
View details
ALKBH6
36502305_36502366_36503902_36503991_36501795_36501947
0.00198
-0.696
DataSet_02_39
View details
ANKS3
4776659_4776781_4776979_4777178_4774750_4774832
0.00353
0.429
DataSet_02_39
View details
AURKA
54963367_54963562_54963742_54963840_54963211_54963258
0.00273
-0.258
DataSet_02_39
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BORA
73303063_73303231_73305418_73305525_73302060_73302145
0.00336
-0.359
DataSet_02_39
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C17orf62
80407306_80407356_80408074_80408130_80407045_80407168
0.00977
-0.492
DataSet_02_39
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CCNL2
1324005_1324123_1324329_1324427_1323333_1323445
0.00004
-1.0
DataSet_02_39
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CDK4
58144224_58144346_58144438_58144548_58143236_58143287
0.00035
-0.488
DataSet_02_39
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CLN6
68503893_68503981_68503986_68504201_68503600_68503656
0.00085
0.673
DataSet_02_39
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Showing 1 to 10 of 126 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCA2
139904644_139905189_139905071_139905189_139904434_139904576
0.00227
-0.667
DataSet_02_39
View details
ABHD11
73151550_73152065_73151891_73152065_73151258_73151440
0.00001
1.0
DataSet_02_39
View details
ABTB1
127393233_127393296_127393233_127393261_127393387_127393443
0.00001
1.0
DataSet_02_39
View details
AC005324.4
15603361_15603680_15603361_15603482_15604465_15604554
0.00010
-0.857
DataSet_02_39
View details
AC009948.1
179291092_179291388_179291092_179291232_179295496_179295616
0.00243
-0.667
DataSet_02_39
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AC026412.1
1632758_1633021_1632959_1633021_1602805_1602850
0.00194
-0.263
DataSet_02_39
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AIF1L
133993142_133993305_133993142_133993234_133995621_133998532
0.00155
-0.753
DataSet_02_39
View details
AKR1A1
46034598_46034678_46034598_46034671_46034814_46034901
0.00004
1.0
DataSet_02_39
View details
ALKBH6
36503922_36504324_36504245_36504324_36502305_36502366
0.00173
-0.667
DataSet_02_39
View details
AMDHD2
2578452_2578719_2578452_2578560_2578994_2579096
0.00996
-0.444
DataSet_02_39
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Showing 1 to 10 of 239 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AARSD1
41114191_41114312_41114191_41114289_41116122_41116254
0.00003
-1.0
DataSet_02_39
View details
ABCC5
183703091_183703243_183703091_183703166_183705557_183705705
0.00121
0.61
DataSet_02_39
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ABHD11
73152657_73152793_73152657_73152772_73152975_73153182
0.00001
0.728
DataSet_02_39
View details
AC005154.1
30603346_30603614_30603346_30603509_30608448_30608605
0.00007
1.0
DataSet_02_39
View details
AC009948.1
179295404_179295616_179295496_179295616_179291092_179291232
0.00709
-0.528
DataSet_02_39
View details
AC087289.3
73897792_73898001_73897792_73897997_73898100_73898235
0.00008
1.0
DataSet_02_39
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ACBD4
43215279_43215355_43215289_43215355_43215126_43215197
0.00548
0.39
DataSet_02_39
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ACOT8
44472165_44472411_44472165_44472360_44472901_44473059
0.00841
0.314
DataSet_02_39
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ACSL4
108926364_108926895_108926364_108926781_108976367_108976554
0.00051
0.731
DataSet_02_39
View details
AFMID
76193215_76193641_76193226_76193641_76187050_76187141
0.00061
-0.289
DataSet_02_39
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Showing 1 to 10 of 341 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCF3
183906875_183907065_183906875_183906932_183907042_183907065
0.00784
-0.476
DataSet_02_39
View details
ABTB1
127395809_127396129_127395809_127395926_127396010_127396129
0.00001
-1.0
DataSet_02_39
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AC005324.4
15603361_15603680_15603361_15603482_15603586_15603680
0.00003
1.0
DataSet_02_39
View details
ACAA1
38167316_38168191_38167316_38167372_38168000_38168191
0.00004
1.0
DataSet_02_39
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ACTR10
58690339_58690574_58690339_58690419_58690500_58690574
0.00004
1.0
DataSet_02_39
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ACTR3
114709296_114713283_114709296_114709422_114713199_114713283
0.00116
0.547
DataSet_02_39
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AKAP8L
15514285_15514526_15514285_15514366_15514468_15514526
0.00815
-0.135
DataSet_02_39
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AKR1B1
134132049_134132813_134132049_134132133_134132212_134132813
0.00285
-0.155
DataSet_02_39
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AKR1C1
5009118_5010578_5009118_5009235_5010500_5010578
0.00077
0.667
DataSet_02_39
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AKT2
40741796_40742292_40741796_40742011_40742163_40742292
0.00975
0.534
DataSet_02_39
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Showing 1 to 10 of 297 entries
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
206579936
A
G
0.00424
SRGAP2
+
FALSE
chr1
59142713
T
C
0.00078
MYSM1
-
FALSE
chr1
6283264
T
C
0.00561
ICMT
-
TRUE
AluSx3
SINE,Alu
chr1
1717502
T
G
0.00239
GNB1
-
FALSE
chr1
207943188
A
G
0.00263
CD46
+
TRUE
AluSx1
SINE,Alu
chr1
21779925
T
G
0.00860
NBPF3
+
FALSE
ERVL-E-int
SINE,Alu
chr1
10518591
A
T
0.00811
.
FALSE
chr1
1636355
A
G
0.00857
CDK11B,CDK11A
-
FALSE
chr1
94335333
G
T
0.00510
DNTTIP2
-
FALSE
chr1
148010972
A
G
0.00068
NBPF8
-
FALSE
Showing 1 to 10 of 262 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression