RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	189877305	T	C	0.00612	COL3A1	+	FALSE
chr7	100271437	C	A	0.00026	GNB2	+	FALSE
chr10	89623863	G	C	0.00107	PTEN	+	FALSE	(CGG)n	SINE,Alu
chr7	5410425	G	C	0.00043	TNRC18	-	FALSE	(CACCGC)n	SINE,Alu
chr12	21015760	G	A	0.00758	SLCO1B3	+	FALSE
chr4	89181478	T	C	0.00656	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr8	128944721	G	T	0.00074	PVT1	+	FALSE
chr1	206579936	A	G	0.00424	SRGAP2	+	FALSE
chr6	74346347	A	G	4.16931E-07	SLC17A5	-	FALSE
chr1	59142713	T	C	0.00078	MYSM1	-	FALSE
chr16	80636806	T	G	0.00926	CDYL2	-	FALSE
chr21	33974094	C	T	0.00880	C21orf59	-	FALSE
chr1	6283264	T	C	0.00561	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	1717502	T	G	0.00239	GNB1	-	FALSE
chr1	207943188	A	G	0.00263	CD46	+	TRUE	AluSx1	SINE,Alu
chr1	21779925	T	G	0.00860	NBPF3	+	FALSE	ERVL-E-int	SINE,Alu
chr4	190883001	C	G	0.00297	FRG1	+	FALSE
chr3	15296357	A	T	3.39714E-05	SH3BP5,SH3BP5-AS1	+,-	FALSE
chr2	206480819	C	T	0.00663	PARD3B	+	FALSE
chr2	68402797	T	A	0.00656	PNO1	+	FALSE
chr1	10518591	A	T	0.00811		.	FALSE
chr10	95163809	G	T	0.00453	MYOF	-	FALSE
chr1	1636355	A	G	0.00857	CDK11B,CDK11A	-	FALSE
chr1	94335333	G	T	0.00510	DNTTIP2	-	FALSE
chr1	148010972	A	G	0.00068	NBPF8	-	FALSE
chr1	59124223	G	A	0.00256	MYSM1	-	FALSE	MIR3	SINE,Alu
chr1	41972561	T	C	0.00606	HIVEP3	-	FALSE	(T)n	SINE,Alu
chr1	154557184	G	A	0.00558	ADAR	-	FALSE	A-rich	SINE,Alu
chr1	61921200	A	T	0.00177	NFIA	+	FALSE
chr1	143135240	C	T	0.00391	LOC102723769	-	FALSE
chr5	149829073	A	G	0.00866	RPS14	-	FALSE
chr1	22357435	A	C	0.00454	LINC00339	+	FALSE
chr19	2917287	C	A	0.00243	ZNF57	+	FALSE
chr1	19542401	T	C	0.00077	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr5	56177845	A	T	0.00420	MAP3K1	+	FALSE
chr7	129592510	G	T	0.00165	UBE2H	-	FALSE
chr1	94351065	A	T	0.00142	GCLM	-	FALSE
chr7	6064010	C	A	0.00304	EIF2AK1	-	FALSE
chrX	135300016	T	C	0.00358	MAP7D3	-	TRUE	AluSz	SINE,Alu
chr16	88789702	G	A	0.00125	PIEZO1	-	FALSE
chr1	204521590	A	G	1.33621E-05	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	32953214	A	G	0.00837	ZBTB8B	+	TRUE	AluSz	SINE,Alu
chr6	159395409	T	C	0.00136		.	FALSE
chr4	3769307	C	A	0.00173	ADRA2C	+	FALSE
chr1	20976078	T	C	0.00064	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr19	42375624	A	G	0.00049		.	FALSE	AluSx	SINE,Alu
chr3	119212015	G	A	0.00024	POGLUT1	+	FALSE
chr2	68402794	T	G	0.00630	PNO1	+	FALSE
chr10	13320236	C	T	0.00011	PHYH	-	FALSE
chr1	86049302	A	G	0.00114	CYR61	+	FALSE
chr1	35644504	A	T	0.00242	SFPQ	-	FALSE
chr1	1337734	C	T	3.46713E-05	MRPL20	-	FALSE
chr4	2841893	A	G	0.00974	SH3BP2	+	TRUE	AluJb	SINE,Alu
chr3	44790781	T	C	0.00074	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	145313405	C	T	0.00322	NBPF20,NBPF10	+	FALSE
chr13	52952680	G	A	7.53266E-06	THSD1	-	FALSE
chr2	11321779	A	T	0.00033	ROCK2	-	FALSE	AluSx1	SINE,Alu
chr1	36067821	T	C	1.12344E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	133104541	A	G	0.00109		.	FALSE
chr3	178978648	G	A	0.00479	KCNMB3	-	FALSE
chr3	179506482	A	G	0.00017	USP13	+	FALSE	MER33	SINE,Alu
chr1	36770605	C	T	8.58098E-05	THRAP3	+	FALSE	(T)n	SINE,Alu
chr19	42375627	A	G	0.00463		.	FALSE	AluSx	SINE,Alu
chr1	38279683	A	T	0.00685	MTF1	-	FALSE
chr1	44088117	G	T	0.00731	PTPRF	+	FALSE	(T)n	SINE,Alu
chr5	10436681	G	T	0.00306	MARCH6	+	FALSE
chr6	42855962	A	G	0.00781	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	203277245	G	A	0.00115	BTG2	+	FALSE
chr2	11728089	C	T	0.00352	GREB1	+	FALSE	AluSz	SINE,Alu
chr8	145159705	G	A	0.00383	MAF1	+	FALSE
chr5	40832555	A	T	0.00347	RPL37	-	FALSE
chr3	14986104	T	C	0.00307	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr2	206986245	T	C	0.00979		.	FALSE	AluSz	SINE,Alu
chr16	81064440	A	G	0.00409	CENPN	+	TRUE	AluSg	SINE,Alu
chr5	149363273	A	G	0.00114	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr14	75202705	A	G	0.00017	FCF1	+	TRUE	AluSc	SINE,Alu
chr5	41919747	C	T	0.00814	C5orf51	+	FALSE	L2c	SINE,Alu
chr19	45406537	T	C	0.00278	TOMM40	+	FALSE
chr9	139698779	C	G	0.00106	CCDC183,CCDC183-AS1	+,-	FALSE	L2b	SINE,Alu
chr1	93826611	C	G	0.00072	DR1	+	FALSE
chr3	40577761	A	G	0.00701	ZNF621	+	TRUE	AluSz	SINE,Alu
chr1	226333560	A	T	0.00339	ACBD3	-	FALSE	(CAAAA)n	SINE,Alu
chr7	138740037	G	C	0.00598	ZC3HAV1	-	FALSE
chr1	93828011	G	T	0.00464	DR1	+	FALSE
chr1	11847346	G	C	0.00547	C1orf167,MTHFR	+,-	FALSE
chr1	1252248	A	G	0.00055	CPSF3L	-	FALSE	AluSx	SINE,Alu
chr1	43272842	A	T	5.93810E-05	SVBP	-	FALSE
chr13	96506664	A	G	5.36176E-05	UGGT2	-	FALSE
chr4	25278988	T	C	2.09007E-08	PI4K2B	+	FALSE
chr1	9163110	T	C	4.21626E-05		.	FALSE	FRAM	SINE,Alu
chr8	26435509	T	C	0.00121	DPYSL2	+	FALSE	(TC)n	SINE,Alu
chr1	16269737	C	T	0.00816	ZBTB17	-	FALSE
chr1	67874849	T	C	7.36358E-05	SERBP1	-	TRUE	AluSx	SINE,Alu
chr5	68936027	G	A	0.00868		.	FALSE
chr1	27108245	T	C	0.00265	ARID1A	+	FALSE
chr1	87379493	G	A	0.00353	SEP15	-	FALSE
chr1	988503	A	T	0.00402	AGRN	+	FALSE
chr1	10518591	A	T	0.00169		.	FALSE
chr15	23282993	G	A	0.00337	HERC2P2	-	FALSE
chr11	93466866	G	T	0.00559	MIR1304	-	FALSE	AluJr	SINE,Alu
chr8	6615608	C	G	0.00017	AGPAT5	+	FALSE
chr1	41972198	A	T	0.00276	HIVEP3	-	FALSE
chr6	153314040	G	A	0.00041	MTRF1L	-	FALSE
chr1	100548868	T	C	8.06321E-05	MFSD14A	+	FALSE
chr17	65334867	T	C	1.03096E-06	PSMD12	-	TRUE	AluSq	SINE,Alu
chr3	183889337	A	T	3.46641E-05	DVL3	+	FALSE
chr2	206987634	T	C	0.00281		.	FALSE	AluJb	SINE,Alu
chr1	19542458	T	C	1.01966E-05	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	117530477	G	A	0.00223	PTGFRN	+	FALSE
chr1	53289686	A	G	0.00222	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr5	151041871	C	A	0.00165	SPARC	-	FALSE
chr1	1597423	C	T	2.12697E-10	CDK11B,SLC35E2B	-	FALSE
chr4	39549701	T	C	0.00269	UGDH-AS1,SMIM14	+,-	FALSE	AluSp	SINE,Alu
chr1	16890598	T	A	0.00428	NBPF1	-	FALSE
chr17	65334868	T	C	0.00096	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	26755291	A	G	0.00044	LIN28A	+	TRUE	AluSx1	SINE,Alu
chr16	31469051	T	C	0.00278		.	FALSE	AluSz	SINE,Alu
chr3	37366459	C	A	2.94197E-05	GOLGA4	+	FALSE
chr1	11982580	G	A	2.06927E-05	KIAA2013	-	FALSE
chr1	62627128	A	G	2.94675E-05	PATJ	+	TRUE	AluSx	SINE,Alu
chr1	15844615	A	G	0.00792	CASP9	-	FALSE
chr1	40229368	A	G	0.00209	BMP8B,PPIE	+,-	FALSE
chr6	32796463	A	C	0.00680		.	FALSE	(CCCCA)n	SINE,Alu
chr17	57279284	A	G	0.00149	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	9163334	T	C	0.00632		.	FALSE	AluSp	SINE,Alu
chr1	200521412	G	A	0.00292	KIF14	-	FALSE
chr5	95222277	C	T	0.00599	ELL2	-	FALSE
chr1	153587308	C	T	0.00077	S100A14	-	FALSE
chr4	129795661	A	T	0.00165	JADE1	+	FALSE
chr12	120898728	A	G	0.00566	GATC	+	TRUE	AluY	SINE,Alu
chr6	150046601	T	C	0.00073	NUP43	-	TRUE	AluSq2	SINE,Alu
chr7	300181	G	A	2.39021E-07	FAM20C	+	FALSE
chr1	12638964	T	C	0.00884	DHRS3	-	FALSE
chr4	6675519	A	C	0.00064	LOC105374366	-	FALSE
chr1	76227022	A	G	0.00759	ACADM	+	FALSE
chr3	115528809	T	G	0.00087	LSAMP	-	FALSE
chr5	38478065	T	A	0.00049	LIFR	-	FALSE
chr16	46831408	T	C	0.00852		.	FALSE	AluSz	SINE,Alu
chr2	37328082	T	C	0.00530		.	FALSE
chr2	20818286	A	C	0.00714	HS1BP3	-	FALSE
chr5	159492103	T	G	0.00332	TTC1	+	FALSE
chr1	46016687	T	C	0.00296	AKR1A1	+	FALSE
chr1	16929100	C	T	0.00249	NBPF1	-	FALSE	LTR16B2	SINE,Alu
chr1	10093371	C	T	0.00264	UBE4B	+	FALSE
chr1	19542354	T	C	0.00684	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	42591956	G	A	0.00030	SEC22C	-	FALSE
chr3	178978532	T	C	0.00061	KCNMB3	-	FALSE
chr3	20025679	A	G	0.00292	RAB5A,PP2D1	+,-	FALSE
chr12	56510700	G	A	2.03060E-05	RPL41	+	FALSE
chr2	39664278	C	A	0.00053	MAP4K3	-	FALSE	(CGC)n	SINE,Alu
chr1	1593828	G	C	0.00348	CDK11B,SLC35E2B	-	FALSE
chr1	16918734	G	C	0.00083	NBPF1	-	FALSE
chr2	44115183	T	A	0.00914	LRPPRC	-	FALSE
chr3	53259329	G	C	0.00036	TKT	-	FALSE
chr14	20940606	G	A	0.00710	PNP	+	FALSE
chr1	2160436	C	T	0.00488	SKI	+	FALSE	(CGC)n	SINE,Alu
chr19	3121451	C	T	0.00567	GNA11	+	FALSE
chr1	36390527	A	G	0.00065		.	FALSE	L2c	SINE,Alu
chr5	137087812	A	C	0.00607	HNRNPA0	-	FALSE
chr5	37290435	T	C	8.22232E-07		.	FALSE	AluSz	SINE,Alu
chr1	25687901	T	C	0.00926	TMEM50A	+	FALSE
chr4	53364	G	A	0.00714	ZNF718,ZNF595	+	FALSE
chr15	23283141	C	A	0.00056	HERC2P2	-	FALSE
chr1	16892277	G	T	0.00021	NBPF1	-	FALSE
chr6	74133914	T	C	0.00014		.	FALSE	AluY	SINE,Alu
chr1	12073252	A	G	0.00990	MFN2	+	FALSE
chr7	138265310	A	G	0.00121	TRIM24	+	FALSE
chr5	139931630	A	T	0.00052	SRA1	-	FALSE
chr5	37290504	T	C	0.00410		.	FALSE	AluSz	SINE,Alu
chr17	78226862	A	C	0.00590	SLC26A11	+	FALSE
chr1	24296869	G	T	0.00973		.	FALSE	AluSg	SINE,Alu
chr17	57279258	A	G	0.00114	PRR11	+	TRUE	AluSq2	SINE,Alu
chr2	37328027	T	C	0.00026		.	FALSE
chr19	39433139	T	G	0.00235	FBXO17	-	FALSE	AluJb	SINE,Alu
chr2	202031433	A	G	0.00611	CFLAR	+	FALSE	SVA_A	SINE,Alu
chr5	174956487	T	C	0.00457	SFXN1	+	FALSE
chr1	146649940	C	T	1.24118E-05	PDIA3P1	+	FALSE
chr2	61369774	T	C	0.00267	LOC339803	-	TRUE	AluSx	SINE,Alu
chr1	179044181	A	G	0.00083	FAM20B	+	TRUE	AluSx	SINE,Alu
chr17	65334802	T	C	1.10547E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	214525603	A	G	0.00047	PTPN14	-	FALSE
chr19	39220786	C	A	0.00303	ACTN4	+	FALSE	A-rich	SINE,Alu
chr1	52520866	C	T	0.00108	TXNDC12	-	FALSE
chr12	56510696	A	T	0.00767	RPL41	+	FALSE
chr1	212459257	A	G	0.00068	PPP2R5A	+	FALSE
chr6	29857589	A	G	0.00280		.	FALSE
chr1	19542463	T	C	0.00447	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	20978324	T	G	0.00153	PINK1-AS,DDOST	-	FALSE	AluY	SINE,Alu
chr1	145512950	A	G	2.03454E-08	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr3	48787052	T	C	0.00866	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	19943823	C	A	0.00752	MINOS1,MINOS1-NBL1	+	FALSE
chr1	101444065	T	C	0.00927	SLC30A7	+	FALSE	MIR3	SINE,Alu
chr1	179325847	A	G	7.26692E-05	SOAT1	+	TRUE	AluJo	SINE,Alu
chr3	122293773	A	T	0.00852	DTX3L	+	FALSE
chr2	37075013	T	A	0.00119	STRN	-	FALSE
chr1	16894497	C	T	0.00454	NBPF1	-	FALSE
chr6	4995431	C	T	0.00449	RPP40	-	FALSE
chr1	43272842	A	T	5.86577E-06	SVBP	-	FALSE
chr1	35648712	G	A	0.00298	SFPQ	-	FALSE
chr7	5107572	A	C	0.00563	RBAK-RBAKDN,RBAK	+	FALSE	L1ME3A	SINE,Alu
chr2	37331207	T	C	0.00745		.	FALSE	AluSx1	SINE,Alu
chr13	38936619	G	T	0.00212	UFM1	+	FALSE
chr1	53291382	A	G	0.00691	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	3730400	T	C	0.00457	CEP104	-	TRUE	AluSx3	SINE,Alu
chr17	4930749	A	G	0.00025	KIF1C	+	TRUE	FLAM_A	SINE,Alu
chr3	44791351	T	C	0.00497	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr1	33148706	A	G	0.00038	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr19	13884084	A	G	0.00843	MRI1	+	TRUE	AluSz	SINE,Alu
chr7	44841933	A	G	0.00192	PPIA	+	TRUE	AluSx	SINE,Alu
chr1	118167515	C	T	0.00852	FAM46C	+	FALSE
chr1	19543247	T	C	0.00870	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chrX	23721458	T	A	0.00413		.	FALSE	AluSc8	SINE,Alu
chr2	100899665	G	A	0.00758	LONRF2	-	FALSE
chr1	143189473	C	A	0.00626	LOC102723769	-	FALSE
chr15	42503336	C	T	0.00916	TMEM87A	-	FALSE	(T)n	SINE,Alu
chr12	125267857	T	C	0.00702	SCARB1	-	TRUE	FRAM	SINE,Alu
chr2	86947783	C	T	0.00515	RNF103-CHMP3,RMND5A	+,-	FALSE
chr1	28826118	A	G	0.00039	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	148556087	G	C	0.00486		.	FALSE
chr1	205112911	T	C	0.00161	DSTYK	-	FALSE
chr3	10168647	T	C	1.56005E-06	BRK1	+	FALSE
chr2	37328034	T	C	0.00380		.	FALSE
chr20	46284868	A	T	0.00681	NCOA3	+	FALSE
chr6	108214773	C	T	0.00265	SEC63	-	FALSE
chr1	144931330	C	T	0.00479	NBPF20,PDE4DIP	+,-	FALSE
chr17	42225547	A	C	0.00240	C17orf53	+	FALSE
chr3	125248838	A	T	0.00899	OSBPL11	-	FALSE
chr19	58361328	G	C	0.00972	ZNF587	+	FALSE
chr1	38327700	T	C	0.00132	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr3	15114306	T	C	0.00036	RBSN	-	TRUE	AluY	SINE,Alu
chr12	72096335	A	G	1.07858E-05	TMEM19	+	FALSE	AluSz6	SINE,Alu
chr14	74524774	T	C	0.00906	BBOF1,ALDH6A1	+,-	FALSE	AluSc8	SINE,Alu
chr12	121769840	T	C	0.00499	ANAPC5	-	TRUE	AluJr	SINE,Alu
chr1	59127086	G	A	0.00051	MYSM1	-	FALSE
chr1	21810022	A	T	0.00218	NBPF3	+	FALSE
chr1	10518688	T	C	0.00341		.	FALSE	AluSx1	SINE,Alu
chr1	109780743	C	A	0.00643	SARS	+	FALSE
chr11	35017260	T	C	0.00224	PDHX	+	FALSE
chr15	91044383	G	T	0.00440	IQGAP1	+	FALSE
chr6	158517308	A	G	0.00959	SYNJ2	+	FALSE
chr1	16952377	C	T	0.00056	CROCCP2	-	FALSE
chr2	217366195	C	A	0.00929		.	FALSE
chr3	196079389	T	C	0.00509		.	FALSE	AluSx	SINE,Alu
chr5	140798639	G	C	3.89156E-05	PCDHGA1,PCDHGA2,PCDHGA3,PCDHGB1,PCDHGA4,PCDHGB2,PCDHGA5,PCDHGB3,PCDHGA6,PCDHGA7,PCDHGB4,PCDHGA8,PCDHGB5,PCDHGA9,PCDHGB6,PCDHGA10,PCDHGB7	+	FALSE
chr6	159396143	T	C	0.00185		.	FALSE	AluSc	SINE,Alu
chr1	154128835	G	T	0.00032	TPM3	-	FALSE
chr1	155429590	G	T	0.00356	ASH1L	-	FALSE
chr1	19566382	A	G	0.00513	LOC101927895,EMC1	+,-	FALSE
chr1	94032944	C	T	0.00147	BCAR3	-	FALSE
chr1	148003749	T	C	0.00517	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr2	33007710	C	T	0.00743	TTC27	+	FALSE
chr4	177249593	T	G	0.00038	SPCS3	+	FALSE	(T)n	SINE,Alu
chr1	144828764	G	T	0.00976	NBPF20,NBPF9	+	FALSE
chr3	5222483	T	G	1.83612E-05	ARL8B	+	FALSE
chr1	26755229	A	G	0.00318	LIN28A	+	FALSE	AluSx1	SINE,Alu
chr2	99812817	A	G	0.00018	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	28261657	C	T	0.00327	SMPDL3B	+	FALSE
chr3	49714225	T	C	0.00023	APEH	+	FALSE
chr1	19953120	G	A	0.00027	MINOS1,MINOS1-NBL1	+	FALSE
chr1	36068237	T	C	0.00150	PSMB2	-	TRUE	AluSc	SINE,Alu
chr22	36883967	T	C	0.00051	FOXRED2	-	TRUE	AluSq2	SINE,Alu
chr2	206986291	T	C	0.00143		.	FALSE	AluSz	SINE,Alu

RBP	LARP7
Knock-Method	siRNA
RBP Family	RRM_3
Biosample Name	HCC1937
Tissue Type	Breast
Biosample Type	Cell line
# of Control	1
# of Treat	1
Species	Human
Data Source	GEO
Profile ID	GSE124395
Platform	GPL20301
Pubmed ID	-

LARP7 - Target Gene Network