Dataset Overview
RBP
RBM10
Knock-Method
siRNA
RBP Family
G-patch
Biosample Name
HEK293
Tissue Type
Kidney
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
GEO
Profile ID
GSE44976
Platform
GPL11154
Pubmed ID
24000153
RBM10 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of RBM10
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
AC004381.6
10.84
15.48
0.46421
0.02577
1.00000
AC004447.2
15.73
11.15
-0.47019
0.02563
1.00000
AC007390.5
28.92
22.07
-0.48377
0.04268
1.00000
AC012309.5
9.61
17.35
0.84707
0.01485
1.00000
AC084219.3
2.56
1.25
-1.00479
0.02000
1.00000
AC099522.1
9.22
13.5
0.56157
0.01812
1.00000
ACBD5
16.23
23.29
0.51294
0.00846
1.00000
ACTR2
70.6
52.33
-0.41664
0.03337
1.00000
ACVR2B
6.02
8.8
0.57549
0.00486
0.85101
ADAM9
22.58
29.34
0.43927
0.02447
1.00000
Showing 1 to 10 of 399 entries
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Function Analysis of Target Genes of RBM10
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AAMDC
77542937_77543058_77532187_77532287_77552064_77552301
0.00000
-0.711
DataSet_02_5
View details
AASS
121738802_121738920_121738503_121738630_121741424_121741492
0.00630
0.333
DataSet_02_5
View details
ABCA2
139904644_139904823_139904434_139904576_139905071_139905189
0.00713
0.108
DataSet_02_5
View details
ABCC10
43398485_43398604_43395705_43395877_43399879_43399914
0.00613
0.033
DataSet_02_5
View details
ABHD10
111705110_111705222_111697856_111698050_111705760_111705898
0.00271
0.407
DataSet_02_5
View details
ABHD17A
1878662_1878903_1877506_1877686_1879919_1880016
0.00133
0.059
DataSet_02_5
View details
ABHD18
128922870_128922915_128905493_128905578_128930074_128930153
0.00016
0.246
DataSet_02_5
View details
ABHD6
58235604_58235669_58223232_58223643_58242288_58242432
0.00021
-0.327
DataSet_02_5
View details
AC005154.1
30591715_30591795_30589936_30590397_30601081_30601103
0.00149
-0.641
DataSet_02_5
View details
AC007161.3
7681134_7681336_7680382_7680452_7712939_7713084
0.00642
0.554
DataSet_02_5
View details
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC023509.1
53858543_53858636_53859715_53859757_53856276_53856351
0.00000
-0.211
DataSet_02_5
View details
ACER3
76670022_76670075_76670120_76670244_76637600_76637711
0.00000
0.646
DataSet_02_5
View details
ACY1
52021003_52021077_52021324_52021469_52020620_52020677
0.00080
-0.542
DataSet_02_5
View details
ADAM15
155033893_155033965_155034379_155034451_155033238_155033308
0.00287
0.643
DataSet_02_5
View details
ADAM15
155033893_155033965_155034379_155034593_155033238_155033308
0.00177
0.289
DataSet_02_5
View details
ADAP2
29276304_29276388_29280305_29280368_29271924_29272071
0.00334
-0.119
DataSet_02_5
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AFMID
76200908_76200981_76201520_76201599_76198783_76198832
0.00545
0.12
DataSet_02_5
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ALDH7A1
125919623_125919704_125928355_125928421_125918542_125918666
0.00788
-0.073
DataSet_02_5
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AMDHD2
2577561_2577616_2577773_2577986_2570984_2571124
0.00105
-0.343
DataSet_02_5
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AP003108.2
61205475_61205585_61213412_61213703_61205096_61205320
0.00037
0.533
DataSet_02_5
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABHD3
19243638_19244191_19244078_19244191_19239130_19239304
0.00501
0.036
DataSet_02_5
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ABR
961083_961285_961209_961285_960237_960342
0.00000
0.634
DataSet_02_5
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AC009948.1
179291092_179291430_179291092_179291388_179295496_179295616
0.00765
0.258
DataSet_02_5
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ACY1
52021003_52021469_52021003_52021077_52021571_52021640
0.00154
0.475
DataSet_02_5
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AL133352.1
102289122_102289263_102289136_102289263_102286731_102286831
0.00734
0.058
DataSet_02_5
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ALG13
110924406_110924652_110924406_110924527_110925359_110925522
0.00184
-0.069
DataSet_02_5
View details
ANAPC15
71823695_71823826_71823779_71823826_71822457_71822542
0.00202
-0.129
DataSet_02_5
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ANXA2
60644577_60644675_60644581_60644675_60643922_60644018
0.00011
0.733
DataSet_02_5
View details
AP1G2
24036805_24036992_24036947_24036992_24036319_24036528
0.00983
-0.389
DataSet_02_5
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ARHGAP22
49663044_49663177_49663096_49663177_49662130_49662204
0.00027
0.083
DataSet_02_5
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Showing 1 to 10 of 122 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AAAS
53709118_53709270_53709118_53709210_53709510_53709566
0.00520
0.273
DataSet_02_5
View details
ABHD11
73152657_73152793_73152657_73152772_73152975_73153182
0.00741
-0.174
DataSet_02_5
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ACSL4
108926364_108926895_108926364_108926781_108976367_108976554
0.00023
-0.261
DataSet_02_5
View details
AKAP10
19861326_19861884_19861326_19861880_19866152_19866335
0.00632
0.248
DataSet_02_5
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ALDH7A1
125894931_125895017_125894931_125894987_125896774_125896816
0.00247
0.456
DataSet_02_5
View details
ALDH7A1
125894931_125895026_125894931_125894987_125896774_125896816
0.00017
0.108
DataSet_02_5
View details
ALDH7A1
125894931_125895044_125894931_125894987_125896774_125896816
0.00126
0.379
DataSet_02_5
View details
ALKBH3
43908155_43908203_43908158_43908203_43905532_43905567
0.00600
-0.21
DataSet_02_5
View details
ANAPC15
71822202_71822332_71822202_71822327_71822457_71822542
0.00214
-0.304
DataSet_02_5
View details
ANAPC5
121756079_121756207_121756079_121756154_121756303_121756411
0.00095
0.382
DataSet_02_5
View details
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC026412.1
1632758_1633021_1632758_1632866_1632959_1633021
0.00683
-0.42
DataSet_02_5
View details
ANAPC5
121756079_121756411_121756079_121756154_121756303_121756411
0.00285
0.246
DataSet_02_5
View details
ARHGAP26
142586762_142587038_142586762_142586873_142587008_142587038
0.00552
0.593
DataSet_02_5
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ARHGEF1
42396095_42396444_42396095_42396194_42396401_42396444
0.00276
-0.085
DataSet_02_5
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B4GALNT1
58021400_58022045_58021400_58021674_58021904_58022045
0.00155
-0.234
DataSet_02_5
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C18orf8
21110192_21110576_21110192_21110261_21110350_21110576
0.00345
-0.3
DataSet_02_5
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CEACAM19
45185838_45187631_45185838_45185892_45186705_45187631
0.00002
0.234
DataSet_02_5
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CNOT3
54647395_54647870_54647395_54647485_54647741_54647870
0.00369
-0.627
DataSet_02_5
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CPNE3
87563273_87563462_87563273_87563328_87563410_87563462
0.00186
-0.579
DataSet_02_5
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CRACR2B
830249_830713_830249_830337_830620_830713
0.00057
0.66
DataSet_02_5
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
210004199
C
G
0.00531
DIEXF
+
FALSE
chr1
28826118
A
G
0.00341
PHACTR4
+
TRUE
AluJb
SINE,Alu
chr1
27879798
A
G
0.00899
AHDC1
-
FALSE
MIRb
SINE,Alu
chr1
6282224
T
C
0.00062
ICMT
-
TRUE
AluSz
SINE,Alu
chr1
46830110
A
G
0.00283
NSUN4
+
TRUE
AluSx1
SINE,Alu
chr1
16011005
G
C
0.00616
PLEKHM2
+
FALSE
(GCG)n
SINE,Alu
chr1
9161011
T
C
0.00190
.
FALSE
AluJb
SINE,Alu
chr1
10502831
A
G
0.00193
APITD1,APITD1-CORT
+
FALSE
chr1
36067925
T
C
2.33961E-06
PSMB2
-
TRUE
AluSz
SINE,Alu
chr1
146495574
C
T
0.00085
LOC728989
-
FALSE
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression