RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	203277244	A	G	0.00115	BTG2	+	FALSE
chr3	122283289	C	A	0.00072	DTX3L,PARP9	+,-	FALSE
chr1	28833494	G	A	0.00122	SNHG3,RCC1	+	FALSE
chr1	67874689	T	C	1.54545E-05	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr9	131093336	T	C	0.00397	COQ4	+	FALSE	AluY	SINE,Alu
chr1	1252443	T	C	8.33820E-06	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr3	42592138	G	A	0.00056	SEC22C	-	FALSE
chr1	23636028	T	A	0.00029	HNRNPR	-	FALSE
chr5	145666114	G	T	0.00766	RBM27	+	FALSE
chr1	2335871	G	A	0.00298	RER1	+	FALSE
chr1	36068231	T	C	0.00022	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	150548881	G	A	9.52924E-05	MCL1	-	FALSE
chr1	201299882	T	G	0.00145	PKP1	+	FALSE
chr1	145293059	A	G	0.00063	NBPF20	+	FALSE
chr2	109401285	G	A	0.00087	RANBP2	+	FALSE
chr4	77057501	A	G	0.00547	NUP54	-	FALSE
chr1	237065326	C	T	0.00376	MTR	+	FALSE
chr5	118174745	T	C	0.00084	DTWD2	-	TRUE	AluY	SINE,Alu
chr1	117910682	G	A	0.00013	MAN1A2	+	FALSE
chr4	38945834	T	C	0.00287	FAM114A1	+	FALSE	AluSc	SINE,Alu
chr2	85776621	T	C	0.00194	GGCX	-	TRUE	AluSz6	SINE,Alu
chr3	119212009	G	A	0.00241	POGLUT1	+	FALSE
chr1	16889624	T	C	3.50465E-05	NBPF1	-	TRUE
chr6	42855256	A	G	0.00572	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr17	65334753	T	C	4.53868E-08	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	114940211	G	T	0.00925	TRIM33	-	FALSE	(T)n	SINE,Alu
chr16	88763958	G	A	7.55606E-05	RNF166	-	FALSE
chr3	194789330	G	T	0.00150	XXYLT1	-	FALSE	AluJr	SINE,Alu
chr1	162497663	G	A	0.00365	UHMK1	+	FALSE
chr1	109475629	A	G	0.00310	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	169293721	G	A	0.00978	NME7	-	FALSE
chr1	204525672	A	G	0.00375	MDM4	+	TRUE	AluSz	SINE,Alu
chr10	101992810	T	C	0.00149	CWF19L1	-	TRUE	AluJb	SINE,Alu
chr1	19542415	T	C	0.00204	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	249139806	G	A	0.00983	ZNF672	+	FALSE
chr1	118066459	A	G	0.00729	MAN1A2	+	FALSE
chr4	95588274	G	A	0.00095	PDLIM5	+	FALSE
chr1	20978457	T	C	0.00036	PINK1-AS,DDOST	-	TRUE	AluY	SINE,Alu
chr1	10520684	T	C	0.00125	DFFA	-	TRUE	AluSc8	SINE,Alu
chr4	38016395	T	G	0.00537	TBC1D1	+	FALSE
chr1	16912014	A	C	0.00702	NBPF1	-	FALSE
chr1	9161218	T	C	0.00641		.	FALSE	AluSx	SINE,Alu
chr2	37330391	T	C	0.00134		.	FALSE	AluSq2	SINE,Alu
chr1	28662199	A	G	0.00011	MED18	+	TRUE	AluSq2	SINE,Alu
chr3	15114293	T	C	2.60553E-05	RBSN	-	TRUE	AluY	SINE,Alu
chr2	176791182	T	C	0.00603	LNPK	-	TRUE	MSTD	SINE,Alu
chr1	2303094	T	C	0.00113	MORN1	-	TRUE	AluSp	SINE,Alu
chr1	10520684	T	C	0.00389	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	6583383	T	C	0.00305	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	3416449	C	A	0.00748	MEGF6	-	FALSE
chr1	54692358	G	A	0.00195	SSBP3	-	FALSE
chr1	53289892	A	G	0.00178	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	25688276	A	G	0.00187	TMEM50A	+	FALSE
chr2	191067763	A	T	0.00038	C2orf88	+	FALSE
chr2	86249930	T	C	6.06022E-05	LOC90784	-	TRUE	AluJr	SINE,Alu
chr2	128064446	G	T	0.00066	MAP3K2	-	FALSE	(GT)n	SINE,Alu
chr7	128143512	A	G	0.00984		.	FALSE	AluJr4	SINE,Alu
chr8	25272425	C	T	0.00605	DOCK5	+	FALSE
chr4	114135223	A	T	5.22810E-05	ANK2	+	FALSE
chr1	55207988	G	A	0.00914	MROH7-TTC4,TTC4	+	FALSE
chr1	36068325	T	C	5.92205E-06	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	27216740	G	A	0.00801	GPN2	-	FALSE
chr12	12967264	C	G	0.00781	DDX47	+	FALSE
chr2	76672504	A	G	2.97414E-06		.	FALSE	7SK	SINE,Alu
chr1	327407	A	G	0.00752		.	FALSE
chr14	74526976	T	C	1.13179E-06	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr1	16889339	C	T	0.00129	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr9	133777993	G	T	0.00959	FIBCD1	-	FALSE
chr1	28661653	A	G	9.75782E-05	MED18	+	TRUE	AluSg	SINE,Alu
chr17	26955330	A	C	0.00291	KIAA0100	-	FALSE
chr2	128950491	A	G	0.00043	UGGT1	+	TRUE	AluSc	SINE,Alu
chr1	990773	C	T	0.00705	AGRN	+	FALSE
chr1	28835934	A	G	0.00596	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	113239382	G	A	0.00519	MOV10	+	FALSE
chr1	38411445	G	A	0.00625	INPP5B	-	FALSE
chr3	197611048	A	G	0.00573		.	FALSE	AluSx1	SINE,Alu
chr5	149781426	A	G	0.00977	CD74	-	FALSE
chr1	118066459	A	G	0.00788	MAN1A2	+	FALSE
chr10	104417856	T	A	0.00616	TRIM8	+	FALSE	(AAT)n	SINE,Alu
chr20	25427885	A	G	0.00455	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	100440553	A	G	9.79324E-05	SLC35A3	+	TRUE	AluJb	SINE,Alu
chr2	129023282	G	C	0.00170	HS6ST1	-	FALSE
chr1	168218671	A	G	0.00974		.	FALSE	AluSz	SINE,Alu
chr1	10520672	T	C	0.00584	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	15896984	A	G	0.00297	DNAJC16	+	FALSE	FLAM_C	SINE,Alu
chr1	32373858	A	T	0.00100	PTP4A2	-	FALSE
chr4	3514539	G	A	6.66134E-16	LRPAP1	-	FALSE
chr1	19543799	T	C	0.00076	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	184429718	A	G	0.00914	MAGEF1	-	FALSE
chr2	9629305	A	T	0.00079	ADAM17	-	FALSE
chr1	27992824	G	A	0.00503	IFI6	-	FALSE
chr1	6165419	C	T	0.00883	CHD5	-	FALSE
chr1	144594107	C	G	0.00706	NBPF20	+	FALSE
chr12	69237021	A	G	0.00229	MDM2	+	TRUE
chr1	214813487	A	G	0.00027	CENPF	+	FALSE
chr1	28824041	T	A	0.00627	PHACTR4	+	FALSE	AluSx	SINE,Alu
chr5	138618619	A	G	0.00513	SNHG4,MATR3	+	TRUE	AluSx	SINE,Alu
chr4	5710647	A	G	5.78692E-06	EVC2	-	FALSE
chr20	43707759	A	G	0.00090	STK4	+	TRUE	AluJb	SINE,Alu
chr2	128620373	C	T	0.00553	AMMECR1L	-	FALSE
chr2	196999052	C	G	0.00358	STK17B	-	FALSE	MER1B	SINE,Alu
chr1	36529549	A	G	0.00806		.	FALSE	AluJr	SINE,Alu
chr3	42591956	G	A	0.00030	SEC22C	-	FALSE
chr1	100549600	G	T	0.00181	SASS6	-	FALSE
chr3	125248855	C	A	0.00071	OSBPL11	-	FALSE
chr2	44115183	T	A	0.00914	LRPPRC	-	FALSE
chr1	225706943	C	T	0.00229	ENAH	-	FALSE
chr1	9160963	T	C	0.00354		.	FALSE	AluJb	SINE,Alu
chr1	120695202	C	A	0.00033		.	FALSE
chr12	100562932	G	T	0.00079	GOLGA2P5	-	FALSE	AluSg	SINE,Alu
chr9	19373161	A	G	0.00647	DENND4C	+	TRUE	MADE1	SINE,Alu
chr13	32973012	A	C	0.00231	BRCA2	+	FALSE
chr12	98942840	A	G	0.00031	TMPO	+	FALSE	AluSc	SINE,Alu
chr5	177577353	C	A	0.00121	NHP2	-	FALSE
chr1	51822219	G	A	0.00018	EPS15	-	FALSE
chr1	144598726	A	C	0.00325	NBPF20	+	FALSE
chrX	77083672	T	C	2.97227E-07	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr1	36535403	A	G	0.00320		.	FALSE	AluSx1	SINE,Alu
chr4	183721749	G	A	0.00324	TENM3	+	FALSE
chr1	150597527	T	C	0.00058	ENSA	-	FALSE
chr3	194373833	G	A	0.00217	LSG1	-	FALSE
chr1	142804438	G	T	0.00618		.	FALSE
chr1	47685593	A	C	0.00891	TAL1	-	FALSE	(CCACCC)n	SINE,Alu
chr1	148556107	A	T	0.00288		.	FALSE
chr1	109239943	C	T	0.00722	PRPF38B	+	FALSE
chr1	11083395	C	T	0.00616	TARDBP	+	FALSE
chr19	21474901	T	C	1.34658E-06	ZNF708	-	TRUE	AluSc	SINE,Alu
chr5	56177849	C	G	0.00921	MAP3K1	+	FALSE	(CAA)n	SINE,Alu
chr1	19447819	T	C	0.00337	UBR4	-	FALSE
chr1	144813815	A	G	2.28281E-05	NBPF20,NBPF9	+	FALSE
chr3	24163645	C	G	1.00972E-05	THRB	-	FALSE
chr1	162497739	G	C	0.00138	UHMK1	+	FALSE
chr1	20826790	T	C	0.00208	MUL1	-	FALSE
chr1	55207985	G	A	0.00156	MROH7-TTC4,TTC4	+	FALSE
chr1	160990878	C	T	9.31086E-06	F11R	-	FALSE
chr2	106510201	C	A	0.00638	NCK2	+	FALSE
chr2	152334389	A	G	0.00308		.	FALSE	AluSq	SINE,Alu
chr2	128601464	T	C	0.00161		.	FALSE	AluJr	SINE,Alu
chr1	10518845	T	C	0.00882		.	FALSE	AluSx1	SINE,Alu
chr19	54971229	T	C	0.00202	LENG8	+	FALSE
chr1	145369589	T	C	0.00128	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr2	191065246	T	A	0.00594	C2orf88	+	FALSE
chr2	25013062	T	C	0.00327		.	FALSE
chr1	26755291	A	G	0.00044	LIN28A	+	TRUE	AluSx1	SINE,Alu
chr3	156258308	T	C	0.00323	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	150337289	G	T	0.00298	RPRD2	+	FALSE
chr1	31532379	A	G	0.00092	PUM1	-	FALSE
chr3	14986150	T	C	7.09959E-07	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr19	42375554	A	G	0.00458		.	FALSE	AluSx	SINE,Alu
chr1	62164735	C	T	0.00016	TM2D1	-	FALSE	AluJb	SINE,Alu
chr2	74381319	C	A	0.00912	MOB1A	-	FALSE	AluY	SINE,Alu
chr1	3730400	T	C	0.00457	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	220231461	T	C	0.00050	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	70718272	A	T	0.00166		.	FALSE
chr1	10517653	T	C	0.00776		.	FALSE	AluSx1	SINE,Alu
chr3	17200677	T	G	0.00371	TBC1D5	-	FALSE
chr2	55516936	A	T	0.00011	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	145513090	A	G	0.00017	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	145512014	A	G	0.00144	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr12	120899702	T	A	0.00967	GATC,SRSF9	+,-	FALSE
chr11	61732461	G	T	2.02182E-05	FTH1	-	FALSE
chr1	9163110	T	C	4.21626E-05		.	FALSE	FRAM	SINE,Alu
chr1	27861184	G	T	0.00425	AHDC1	-	FALSE	(TCTTTT)n	SINE,Alu
chr1	33148096	A	G	0.00404	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	1252221	T	C	0.00728	CPSF3L	-	TRUE	AluSx	SINE,Alu
chr1	149819554	T	C	0.00137		.	FALSE	MLT1C2	SINE,Alu
chr1	15993514	C	T	6.34808E-08		.	FALSE	AluSx4	SINE,Alu
chr2	174090321	C	A	0.00273	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr1	36851360	G	A	0.00578	STK40	-	FALSE
chr1	6582498	T	C	0.00403	NOL9	-	TRUE	AluSx1	SINE,Alu
chr1	114227223	G	A	0.00699	MAGI3	+	FALSE
chr6	158093827	C	T	0.00201	ZDHHC14	+	FALSE
chr1	33148621	A	G	0.00754	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr3	192515510	G	T	0.00559	MB21D2	-	FALSE
chr5	6668842	C	T	4.46208E-05	SRD5A1	+	FALSE
chrX	131339006	T	A	0.00405	RAP2C	-	FALSE
chr4	165998226	T	C	0.00754	TMEM192	-	TRUE	AluSx	SINE,Alu
chr1	9328242	A	G	0.00018	H6PD	+	TRUE	AluJr	SINE,Alu
chr5	122165482	C	T	0.00367	SNX2	+	FALSE	(AC)n	SINE,Alu
chr14	53242639	T	C	1.43651E-05	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr1	10518733	T	C	0.00952		.	FALSE	AluSx1	SINE,Alu
chr1	26143726	G	T	0.00560	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	31905905	G	C	0.00028	SERINC2	+	FALSE
chr3	73115786	T	C	0.00470	PPP4R2	+	FALSE
chr1	10519912	T	C	5.10285E-06		.	FALSE	AluJr	SINE,Alu
chrX	54587196	A	G	0.00392	GNL3L	+	TRUE	AluSq2	SINE,Alu
chr1	16060892	C	T	0.00946	PLEKHM2	+	FALSE
chr1	26608014	C	A	0.00328		.	FALSE
chr1	8412652	A	C	0.00929	RERE	-	FALSE
chr1	228675570	G	C	0.00298	RNF187	+	FALSE
chr1	230416410	G	T	0.00516	GALNT2	+	FALSE
chr1	23885230	C	G	0.00075	ID3	-	FALSE
chr1	202861470	C	A	0.00441	KLHL12	-	FALSE
chr1	10517314	T	C	0.00288		.	FALSE	AluJr	SINE,Alu
chr1	11979809	A	C	0.00836	KIAA2013	-	FALSE
chr1	214529234	T	C	0.00062	PTPN14	-	TRUE
chr5	75003678	T	C	0.00435	POC5	-	FALSE
chr1	28564612	C	A	0.00714	ATPIF1	+	FALSE
chr10	72187740	C	A	0.00668	EIF4EBP2	+	FALSE
chr4	155456608	A	G	0.00734	PLRG1	-	FALSE	L1MC5	SINE,Alu
chr18	19445881	T	A	0.00224	MIB1	+	FALSE
chr1	26801762	G	T	0.00762	HMGN2	+	FALSE
chr17	8378932	A	G	0.00372	MYH10	-	FALSE
chr17	42113064	A	G	0.00014	LSM12	-	FALSE	(A)n	SINE,Alu
chr1	150281011	A	G	0.00016	MRPS21	+	TRUE	AluSz	SINE,Alu
chr1	31344952	C	T	0.00544	SDC3	-	FALSE
chr10	13234356	A	T	3.19668E-07	MCM10	+	FALSE
chr6	44417835	A	G	8.27091E-07	CDC5L	+	TRUE	AluSx	SINE,Alu
chr1	27205634	T	C	0.00025		.	FALSE	FLAM_A	SINE,Alu
chr11	35017260	T	C	0.00224	PDHX	+	FALSE
chr5	81571876	A	T	0.00092	RPS23	-	FALSE
chr1	45280109	A	G	0.00251		.	FALSE	AluYk3	SINE,Alu
chr1	142619487	A	G	0.00511		.	FALSE
chr7	94060361	C	T	2.02320E-06	COL1A2	+	FALSE
chr1	86852362	C	A	0.00073	ODF2L	-	FALSE	AluSz	SINE,Alu
chr1	205687358	T	C	0.00692	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr1	225683161	T	G	0.00168	ENAH	-	FALSE	(T)n	SINE,Alu
chr3	176739404	A	G	7.21134E-06	TBL1XR1	-	FALSE
chr12	7052982	T	G	0.00199	C12orf57	+	FALSE	U7	SINE,Alu

RBP	CHD7
Knock-Method	shRNA
RBP Family	BRK
Biosample Name	ICB1299
Tissue Type	Blood
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	GEO
Profile ID	GSE83696
Platform	GPL11154
Pubmed ID	N.A.

CHD7 - Target Gene Network