RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	145511797	T	G	0.00894	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	(T)n	SINE,Alu
chr1	16384843	G	C	0.00049	FAM131C	-	FALSE
chr1	63009329	T	G	0.00155	DOCK7	-	FALSE
chr1	179813613	T	C	7.15786E-05	TOR1AIP2	-	FALSE
chr1	52306079	T	A	0.00606	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr2	32582399	T	G	0.00147	BIRC6	+	FALSE	(GGC)n	SINE,Alu
chr1	21793735	C	G	0.00099	NBPF3	+	FALSE
chr1	109818158	C	T	0.00212	CELSR2	+	FALSE
chr4	39552066	T	C	0.00370	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr4	71682381	T	C	0.00037	GRSF1	-	TRUE	AluSz6	SINE,Alu
chr3	44791553	T	C	0.00298	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr3	17200672	C	A	0.00665	TBC1D5	-	FALSE
chr1	146250905	G	C	0.00444	NBPF20,NBPF10,NBPF25P	+	FALSE
chr1	1419130	A	G	0.00685	ATAD3B	+	FALSE	AluSz	SINE,Alu
chr1	36068325	T	C	0.00638	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	8413129	G	A	0.00040	RERE	-	FALSE
chr1	87573963	T	C	0.00787	HS2ST1	+	FALSE
chr19	16662827	T	C	0.00218	SLC35E1	-	TRUE	AluSz	SINE,Alu
chr1	26774225	A	G	0.00614	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr1	10517313	T	C	0.00196		.	FALSE	AluJr	SINE,Alu
chr1	15755248	C	T	0.00405	EFHD2	+	FALSE
chr1	11298093	C	T	7.93954E-12	MTOR	-	FALSE
chr1	40229368	A	G	0.00209	BMP8B,PPIE	+,-	FALSE
chr1	36067838	T	C	0.00348	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	61922501	A	C	0.00231	NFIA	+	FALSE	A-rich	SINE,Alu
chr1	9328120	A	G	1.75282E-05	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	153507176	C	T	0.00957	S100A6	-	FALSE
chr9	125609940	T	A	0.00044		.	FALSE
chr3	13670776	T	C	0.00336	FBLN2	+	FALSE
chr1	19542401	T	C	0.00077	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	145694181	A	G	0.00052	NBPF20,NBPF10	+	TRUE	AluSz	SINE,Alu
chr4	22404391	G	A	0.00338	ADGRA3	-	FALSE
chr1	32799512	A	T	0.00929	MARCKSL1	-	FALSE
chr1	179042616	A	G	1.60543E-05	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr4	17802783	T	C	6.83941E-07	DCAF16	-	TRUE	AluSz	SINE,Alu
chr3	44790781	T	C	0.00289	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	44072066	C	T	0.00846	PTPRF	+	FALSE
chr1	206635245	T	C	0.00238	SRGAP2	+	FALSE
chr1	182568729	C	G	0.00012	RGS16	-	FALSE
chr3	12598618	C	T	0.00812	MKRN2	+	FALSE
chr1	11347150	C	A	0.00380	UBIAD1	+	FALSE
chr2	206986233	T	C	0.00491		.	FALSE	AluSz	SINE,Alu
chr2	183622547	T	G	0.00346	DNAJC10	+	FALSE
chr6	74346347	A	G	4.16931E-07	SLC17A5	-	FALSE
chr1	53680205	C	T	4.54902E-05	C1orf123	-	FALSE
chr2	10908893	A	G	0.00087	ATP6V1C2	+	FALSE
chr1	16889820	C	T	0.00012	NBPF1	-	FALSE
chr5	132028864	G	A	0.00593	KIF3A	-	FALSE
chr12	56510708	A	G	0.00050	RPL41	+	FALSE
chr1	33148282	A	G	0.00825	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr4	2940147	T	C	0.00061	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	1595006	T	C	1.43617E-06	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	2434523	T	C	0.00064	PLCH2	+	FALSE
chr2	242122440	C	A	0.00354	PPP1R7	+	FALSE
chr1	27992624	G	A	0.00813	IFI6	-	FALSE
chr8	145159713	G	C	0.00137	MAF1	+	FALSE
chr1	9161179	T	C	0.00570		.	FALSE	AluSx	SINE,Alu
chr1	33147942	A	G	0.00423	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr1	33148698	A	G	0.00736	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	86117191	T	C	1.34616E-06	ZNHIT6	-	TRUE	AluSg	SINE,Alu
chr1	151027536	G	C	0.00518	CDC42SE1	-	FALSE
chr1	45244414	T	A	0.00456		.	FALSE
chr4	129795661	A	T	0.00165	JADE1	+	FALSE
chr1	100316589	A	G	0.00481	AGL	+	FALSE
chr1	36067677	T	C	5.01583E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	15668319	G	A	0.00489	FHAD1	+	FALSE
chr2	99813003	A	G	0.00046	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	93803622	T	C	0.00096	CCDC18-AS1	-	TRUE	AluJr	SINE,Alu
chr1	16889127	A	G	0.00213	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr1	145512925	A	G	0.00230	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr2	25013062	T	C	0.00327		.	FALSE
chr1	204524846	A	G	0.00940	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	155429590	G	T	0.00356	ASH1L	-	FALSE
chr1	33150642	A	G	0.00316	SYNC,RBBP4	+,-	FALSE	AluJo	SINE,Alu
chr6	111591610	A	G	0.00105		.	FALSE	FLAM_A	SINE,Alu
chr2	69689699	T	C	0.00800	AAK1	-	TRUE	AluSg	SINE,Alu
chr3	105295461	G	A	9.74520E-12	ALCAM	+	FALSE
chr19	51305797	T	C	0.00397	C19orf48	-	TRUE	AluSg	SINE,Alu
chr11	76733946	A	G	0.00725	ACER3	+	FALSE	A-rich	SINE,Alu
chr1	19543457	T	C	0.00012	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	242512159	A	G	0.00243	BOK	+	FALSE
chr1	28662199	A	G	7.40709E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	19953120	G	A	0.00027	MINOS1,MINOS1-NBL1	+	FALSE
chr1	202848587	G	A	2.63176E-05	RABIF	-	FALSE
chr15	65442506	T	C	0.00088	CLPX	-	TRUE	AluSg4	SINE,Alu
chr3	156258295	T	C	0.00096	SSR3	-	TRUE	AluYk3	SINE,Alu
chr16	10623639	T	C	0.00392	EMP2	-	TRUE	AluSp	SINE,Alu
chr5	43574976	T	C	0.00613	NNT-AS1	-	TRUE	AluSq2	SINE,Alu
chr8	30536606	T	C	0.00017	GSR	-	TRUE	AluSp	SINE,Alu
chr3	10322331	C	G	0.00180	TATDN2	+	FALSE
chr2	55452459	G	T	5.59903E-07	CLHC1	-	FALSE
chr1	25570565	G	A	0.00244	RSRP1	-	FALSE	Alu	SINE,Alu
chr1	10366487	T	G	0.00187	KIF1B	+	FALSE
chr1	200521412	G	A	0.00588	KIF14	-	FALSE
chr4	185309400	T	A	0.00250	IRF2	-	FALSE	(GGGAT)n	SINE,Alu
chr1	16958064	A	G	0.00446		.	FALSE
chr1	44088568	G	A	0.00274	PTPRF	+	FALSE	A-rich	SINE,Alu
chr3	57743246	G	A	0.00221	SLMAP	+	FALSE
chr5	74072634	T	A	0.00187	NSA2	+	FALSE
chr11	118661811	T	G	0.00582	DDX6	-	FALSE
chr2	160084473	A	C	0.00101	TANC1	+	FALSE
chr1	32799435	A	T	0.00515	MARCKSL1	-	FALSE
chr1	87811100	A	T	0.00084	LMO4	+	FALSE
chr1	169768080	C	A	5.53708E-05	C1orf112	+	FALSE
chr10	15120275	T	C	0.00017	ACBD7	-	TRUE	L1PA7	SINE,Alu
chr1	217804325	G	A	0.00229	GPATCH2	-	FALSE
chr4	103715820	A	C	0.00652	LOC102723704,UBE2D3	+,-	FALSE	(A)n	SINE,Alu
chr12	27955296	C	T	3.87648E-07	KLHL42	+	FALSE
chr1	65299551	G	T	0.00292	JAK1	-	FALSE
chr2	110842200	C	A	0.00131	MALL	-	FALSE
chr1	11141187	C	G	0.00814	EXOSC10	-	FALSE
chr1	109746825	A	G	0.00281	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr17	60522252	G	A	0.00187	METTL2A	+	FALSE
chr2	152314385	G	A	0.00040	RIF1	+	FALSE
chr1	46077345	A	G	0.00024	NASP	+	TRUE	AluSc8	SINE,Alu
chr1	70904800	G	T	0.00772	CTH	+	FALSE
chr2	128620435	C	A	0.00602	AMMECR1L	-	FALSE
chr1	3545198	T	C	3.01160E-05	TPRG1L	+	FALSE
chr3	126755134	C	T	0.00920	PLXNA1	+	FALSE
chr1	20976075	T	C	0.00351	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr4	124237124	A	G	0.00119	SPATA5	+	TRUE	AluJr	SINE,Alu
chr1	19953124	G	A	0.00106	MINOS1,MINOS1-NBL1	+	FALSE
chr1	145512073	A	G	0.00131	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr6	11577085	C	T	1.34362E-05	TMEM170B	+	FALSE
chr14	68117864	A	T	0.00744	ARG2	+	FALSE
chr1	6582176	T	C	0.00893	NOL9	-	TRUE	AluSq4	SINE,Alu
chr2	223807622	G	T	0.00875	ACSL3	+	FALSE
chr1	150337289	G	T	0.00298	RPRD2	+	FALSE
chr1	10042988	A	G	4.26240E-05	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	3545191	C	T	5.51731E-05	TPRG1L	+	FALSE
chr2	37331065	T	C	0.00017		.	FALSE	AluSx1	SINE,Alu
chr1	26161107	A	T	0.00022	AUNIP	-	FALSE	AluSc8	SINE,Alu
chr6	150047376	T	C	0.00306	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	10519119	T	C	0.00892		.	FALSE	AluSx3	SINE,Alu
chr3	179042910	A	G	0.00061	ZNF639	+	TRUE	AluSp	SINE,Alu
chr6	150047362	T	C	0.00076	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	200941185	T	G	0.00729	KIF21B	-	FALSE
chr16	48386425	A	G	0.00152	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr1	11982544	T	C	4.37710E-05	KIAA2013	-	FALSE
chr1	146495574	C	T	0.00085	LOC728989	-	FALSE
chr12	27848051	C	A	0.00245	PPFIBP1	+	FALSE
chr1	113212976	C	T	0.00043	CAPZA1	+	FALSE
chr7	44618353	T	C	0.00168	TMED4	-	TRUE	AluSq2	SINE,Alu
chr6	31506635	T	G	6.78064E-05		.	FALSE
chr4	77996969	T	G	0.00971	CCNI	-	FALSE
chr2	198416727	T	A	0.00378	HSPE1-MOB4,MOB4	+	FALSE
chr1	153782011	C	T	0.00913	GATAD2B	-	FALSE
chr1	150783955	T	C	0.00077	ARNT	-	FALSE	(CA)n	SINE,Alu
chr4	113346996	G	A	0.00191	ALPK1	+	FALSE
chr1	10521170	T	C	0.00104	DFFA	-	TRUE	AluY	SINE,Alu
chr1	200375418	C	T	0.00425	ZNF281	-	FALSE
chr1	182993025	C	T	0.00490	LAMC1	+	FALSE
chr1	65897981	G	A	0.00025	LEPR,LEPROT	+	FALSE
chr1	17345246	A	T	0.00812	SDHB	-	FALSE
chr6	13790931	T	C	0.00948	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr1	100656265	C	T	0.00318	DBT	-	FALSE
chr6	41888827	C	G	0.00936	MED20	-	FALSE
chr1	19542310	T	C	2.12437E-06	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	17733270	T	A	0.00088	RCC2	-	FALSE
chr1	228881129	A	G	0.00199	RHOU	+	FALSE
chr1	22400707	C	G	0.00232	CDC42	+	FALSE	AluSc8	SINE,Alu
chr2	24225006	A	G	0.00078		.	FALSE	AluSx	SINE,Alu
chr1	6582558	T	C	0.00030	NOL9	-	TRUE	AluSx1	SINE,Alu
chr3	10192826	A	G	0.00037	VHL	+	TRUE	AluSx1	SINE,Alu
chr16	88767769	G	C	0.00420	RNF166	-	FALSE
chr1	53289892	A	G	0.00505	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	45975740	C	G	0.00096	MMACHC	+	FALSE	AluSx4	SINE,Alu
chr2	73301687	G	A	0.00618	RAB11FIP5	-	FALSE
chr12	133298465	A	G	5.98085E-08	PGAM5	+	TRUE	AluSp	SINE,Alu
chr3	197611048	A	G	0.00573		.	FALSE	AluSx1	SINE,Alu
chr5	141690819	G	A	0.00062	SPRY4	-	FALSE
chr3	196670086	T	G	1.91816E-05	NCBP2-AS2	+	FALSE
chr1	9163334	T	C	0.00632		.	FALSE	AluSp	SINE,Alu
chr1	109192040	T	C	6.39517E-05	HENMT1	-	TRUE	AluJr	SINE,Alu
chr3	101405564	G	A	0.00354		.	FALSE
chr1	146649940	C	T	1.24118E-05	PDIA3P1	+	FALSE
chr1	10520487	T	C	0.00638		.	FALSE	AluSx1	SINE,Alu
chr3	179116220	T	C	0.00233	GNB4	-	TRUE	AluSz6	SINE,Alu
chr5	139931632	C	G	0.00052	SRA1	-	FALSE
chr19	18475356	A	G	0.00360	PGPEP1	+	TRUE	AluSx1	SINE,Alu
chr1	36068227	T	C	0.00398	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	13942884	A	C	0.00016	PDPN	+	FALSE
chr1	179843781	T	C	0.00888	TOR1AIP2	-	TRUE	AluJb	SINE,Alu
chr1	226821306	A	G	0.00501	ITPKB	-	FALSE
chr1	117532790	C	T	0.00981	PTGFRN	+	FALSE
chr1	42644770	C	T	1.21495E-06	FOXJ3	-	FALSE
chr3	57611237	A	G	9.49839E-05	DENND6A,PDE12	+,-	FALSE
chr10	28971536	A	T	0.00815	BAMBI	+	FALSE
chr1	21544601	C	T	0.00196	ECE1	-	FALSE
chr1	31905886	C	A	0.00702	SERINC2	+	FALSE
chr5	79923361	T	C	0.00050	DHFR	-	TRUE	AluJr	SINE,Alu
chr1	54691921	G	A	0.00010	SSBP3	-	FALSE
chr7	77409288	A	G	7.47972E-05		.	FALSE	AluSc	SINE,Alu
chr10	89623860	C	G	0.00071	PTEN	+	FALSE	(CGG)n	SINE,Alu
chr2	171850175	G	T	0.00054	TLK1	-	FALSE
chr2	47562582	G	A	0.00484	LOC101927043	-	FALSE	BC200	SINE,Alu
chr1	142619487	A	G	0.00511		.	FALSE
chr1	23240263	G	A	5.22984E-05	EPHB2	+	FALSE
chr1	44088117	G	T	0.00731	PTPRF	+	FALSE	(T)n	SINE,Alu
chr3	156258255	T	C	0.00059	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	1469546	G	A	0.00331	ATAD3A	+	FALSE
chr2	61764922	G	A	0.00268	XPO1	-	FALSE
chr6	43582795	A	G	0.00087	POLH	+	TRUE	AluSx1	SINE,Alu
chr1	120164252	G	A	0.00139	ZNF697	-	FALSE
chr1	202993198	C	A	0.00754	TMEM183A	+	FALSE
chr19	21302035	A	G	5.57890E-05	ZNF714	+	TRUE	AluSg4	SINE,Alu
chr15	52601189	C	T	0.00574	MYO5A	-	FALSE
chr1	10520099	T	C	6.30717E-05		.	FALSE	AluSx	SINE,Alu
chr1	144604425	C	T	0.00269	NBPF20	+	FALSE
chr1	145688973	A	G	0.00017	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	244572644	G	C	0.00088	ADSS	-	FALSE
chr12	56510696	A	T	0.00015	RPL41	+	FALSE
chr1	145693060	A	G	2.60299E-05	NBPF20,NBPF10	+	TRUE	AluSz6	SINE,Alu
chr22	36677546	T	G	0.00197	MYH9	-	FALSE
chr15	41597484	A	G	0.00619		.	FALSE	AluSz6	SINE,Alu
chr3	155572129	C	T	0.00082	SLC33A1	-	FALSE
chr1	10517688	T	C	0.00020		.	FALSE	AluSx1	SINE,Alu
chr1	36067752	T	C	9.44020E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr7	102090451	A	G	0.00360	ORAI2	+	TRUE	AluSz	SINE,Alu
chr1	35650014	C	A	0.00012	SFPQ	-	FALSE
chr1	154554947	T	G	0.00511	ADAR	-	FALSE
chr16	71765443	C	T	0.00223	AP1G1	-	FALSE
chr6	44417159	A	G	0.00959	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr5	43609343	C	T	0.00556	NNT	+	FALSE
chr1	53291425	A	G	0.00507	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr3	53265957	T	C	0.00493	TKT	-	FALSE
chr1	16576836	A	G	0.00885	FBXO42	-	FALSE
chr1	37949806	G	A	2.03247E-05	ZC3H12A	+	FALSE
chr2	61764895	C	A	0.00862	XPO1	-	FALSE	(AC)n	SINE,Alu

RBP	CHD9
Knock-Method	shRNA
RBP Family	BRK
Biosample Name	SNB19
Tissue Type	Brain
Biosample Type	Cell line
# of Control	2
# of Treat	4
Species	Human
Data Source	GEO
Profile ID	GSE148803
Platform	GPL11154
Pubmed ID	N.A.

CHD9 - Target Gene Network