RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr11	118471800	T	A	0.00875	ARCN1	+	FALSE	AluSx3	SINE,Alu
chr16	10625058	T	C	2.66942E-12	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	245017464	T	A	0.00314	HNRNPU,SNORA100	-	FALSE
chr20	57603730	A	T	0.00101		.	FALSE
chr1	201845881	A	G	0.00422	IPO9	+	FALSE
chr1	93617404	T	G	0.00265	TMED5	-	FALSE
chr2	128064423	C	T	0.00063	MAP3K2	-	FALSE
chr1	17199259	G	A	0.00217	LOC440570	+	FALSE
chr16	81064492	A	G	0.00935	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	10517538	T	C	0.00840		.	FALSE	AluSx1	SINE,Alu
chr1	109818158	C	T	4.51493E-05	CELSR2	+	FALSE
chr1	12401868	A	C	0.00526	VPS13D	+	FALSE
chr1	10368092	A	C	0.00945	KIF1B	+	FALSE
chr1	231468953	G	A	0.00085	EXOC8	-	FALSE
chr3	5026731	C	T	0.00824	BHLHE40	+	FALSE
chr1	134370	T	C	0.00327		.	FALSE	AluSg	SINE,Alu
chr17	46803538	C	T	0.00492	HOXB13	-	FALSE
chr5	58267557	C	T	0.00420	PDE4D	-	FALSE
chr1	27992824	G	A	0.00503	IFI6	-	FALSE
chr1	33150598	T	C	4.12722E-05	SYNC,RBBP4	+,-	FALSE
chr3	14986110	T	C	0.00632	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	45280500	A	G	0.00857		.	FALSE	AluSx	SINE,Alu
chr1	113455427	T	A	0.00814	SLC16A1	-	FALSE
chr1	118066724	A	T	0.00979	MAN1A2	+	FALSE
chr1	36068369	T	C	0.00511	PSMB2	-	TRUE	AluSc	SINE,Alu
chr8	145159709	C	A	0.00314	MAF1	+	FALSE
chr1	203713133	G	A	0.00984	ATP2B4	+	FALSE
chr1	109818160	T	G	0.00745	CELSR2	+	FALSE
chr1	145281543	C	T	0.00028	NBPF20,NOTCH2NL	+	FALSE
chrX	16781156	A	G	0.00061		.	FALSE	AluJo	SINE,Alu
chr1	87573348	C	A	0.00879	HS2ST1	+	FALSE
chr6	42061234	T	C	0.00170		.	FALSE	AluSx1	SINE,Alu
chr1	27205224	T	C	0.00353		.	FALSE	AluSc	SINE,Alu
chr7	65618786	A	G	3.58027E-08	CRCP	+	TRUE	AluSx3	SINE,Alu
chr1	47184539	C	T	0.00425	EFCAB14	-	FALSE
chr1	100654765	T	C	0.00254	DBT	-	TRUE	AluSz	SINE,Alu
chr1	3545183	A	T	0.00347	TPRG1L	+	FALSE
chr15	83659319	A	T	0.00130	FAM103A1,C15orf40	+,-	FALSE
chr2	17962998	T	A	0.01000	GEN1	+	FALSE
chr17	53470462	C	T	0.00230	MMD	-	FALSE
chr1	154128333	T	A	0.00204	TPM3	-	FALSE
chr15	30781885	C	T	0.00380		.	FALSE
chr4	84525986	G	T	0.00081	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr1	1593750	A	G	0.00191	CDK11B,SLC35E2B	-	FALSE
chr1	183218870	G	T	0.00338	NMNAT2	-	FALSE
chr1	112003958	T	A	0.00557	ATP5F1	+	FALSE	Helitron2Na_Mam	SINE,Alu
chr3	197682718	T	C	0.00163	IQCG,RPL35A	+,-	FALSE
chr5	174956493	T	A	0.00466	SFXN1	+	FALSE
chr2	174828621	A	C	0.00315	SP3	-	FALSE
chr2	158636910	G	A	0.00160	ACVR1	-	FALSE
chr19	39874945	T	C	0.00335	SAMD4B	+	FALSE
chr16	58054477	T	C	0.00180	USB1	+	FALSE
chr2	84670484	T	C	0.00324	SUCLG1	-	TRUE
chr19	46052975	T	C	0.00652	OPA3	-	TRUE	AluSz6	SINE,Alu
chr1	1469782	G	C	0.00544	ATAD3A	+	FALSE
chr3	195701388	G	A	0.00274	SDHAP1	-	FALSE
chr2	105964472	C	T	0.00398	C2orf49	+	FALSE	(TTTCTCC)n	SINE,Alu
chr1	94342564	C	A	0.00098	DNTTIP2	-	FALSE
chr3	101399939	G	T	1.18387E-05	RPL24	-	FALSE
chr8	12879707	T	G	0.00780	KIAA1456	+	FALSE
chr1	35886030	T	C	0.00606	ZMYM4	+	FALSE
chr1	11979807	C	A	0.00574	KIAA2013	-	FALSE
chr1	120839743	C	T	0.00647	FAM72B	+	FALSE
chr19	7116159	G	T	0.00368	INSR	-	FALSE
chr1	1534826	C	T	0.00382	FNDC10	-	FALSE
chr1	10521162	T	C	0.00911	DFFA	-	TRUE	AluY	SINE,Alu
chr1	25170760	T	A	0.00975	CLIC4	+	FALSE
chr1	145116141	G	A	0.00266	NBPF20,SEC22B	+	FALSE
chr2	217366901	A	G	0.00143		.	FALSE	AluSz6	SINE,Alu
chr3	176739580	T	C	4.09936E-06	TBL1XR1	-	FALSE
chr1	33148706	A	G	0.00050	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr3	160219095	G	A	0.00620	KPNA4	-	FALSE	A-rich	SINE,Alu
chr1	6282420	T	C	0.00133	ICMT	-	TRUE	AluSz	SINE,Alu
chr4	190864378	T	G	0.00247	FRG1	+	FALSE	GA-rich	SINE,Alu
chr15	65442678	T	C	2.30704E-07	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	144481235	A	G	1.18230E-05	NBPF20	+	FALSE
chr1	86815303	T	C	0.00571	ODF2L	-	FALSE
chr1	121133770	A	G	2.59811E-05	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr1	16932428	C	G	0.00620	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr6	42857179	C	A	0.00492	RPL7L1	+	FALSE	AluSp	SINE,Alu
chr12	98943162	A	G	5.01524E-05	TMPO	+	TRUE	AluSz	SINE,Alu
chr5	32586387	T	C	0.00569	SUB1	+	FALSE
chr1	20976023	T	C	0.00889	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr5	156905300	A	C	0.00870	ADAM19	-	FALSE	MER92B	SINE,Alu
chr2	198416735	T	G	0.00257	HSPE1-MOB4,MOB4	+	FALSE
chr3	45721874	A	G	0.00314	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr3	129152089	G	A	0.00154	MBD4	-	FALSE
chr1	57002773	A	G	0.00162	PLPP3	-	FALSE
chr1	45975279	T	C	0.00019	MMACHC	+	FALSE	AluSg7	SINE,Alu
chr1	115313038	G	A	0.00144	SIKE1	-	FALSE
chr1	230975454	A	G	0.00438	C1orf198	-	FALSE
chr14	19684445	A	G	0.00351	DUXAP10	+	FALSE
chr1	62627191	A	G	0.00146	PATJ	+	TRUE	AluSx	SINE,Alu
chr2	37331125	T	C	0.00036		.	FALSE	AluSx1	SINE,Alu
chr19	42375586	A	G	0.00404		.	FALSE	AluSx	SINE,Alu
chr7	300181	G	A	2.39021E-07	FAM20C	+	FALSE
chr1	10517313	T	C	0.00015		.	FALSE	AluJr	SINE,Alu
chr3	45721922	A	G	0.00181	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr3	44790879	T	C	0.00453	KIAA1143	-	TRUE	AluY	SINE,Alu
chr14	90509582	T	C	0.00017	TDP1	+	FALSE
chr1	33068221	A	G	0.00448	ZBTB8A	+	TRUE	AluY	SINE,Alu
chr3	49395691	C	T	0.00037	GPX1	-	FALSE	(GCC)n	SINE,Alu
chr7	6063283	C	T	0.00032	AIMP2,EIF2AK1	+,-	FALSE
chr14	70838324	T	C	0.00011	SYNJ2BP-COX16,SYNJ2BP	-	TRUE	AluSg	SINE,Alu
chr3	140695493	C	A	0.00559	SLC25A36	+	FALSE
chr5	34906547	T	C	0.00051	RAD1	-	TRUE	AluJo	SINE,Alu
chr1	144868170	C	T	0.00750	NBPF20,PDE4DIP	+,-	FALSE
chr1	144053567	C	T	0.00963		.	FALSE
chr1	32801745	A	G	0.00357	MARCKSL1	-	FALSE
chr7	29961437	T	G	6.91541E-06	SCRN1	-	FALSE
chr10	15120306	T	C	0.00323	ACBD7	-	TRUE	L1PA7	SINE,Alu
chr1	24934236	A	G	0.00596	NCMAP	+	TRUE	AluSz6	SINE,Alu
chr7	21941583	C	A	0.00499	CDCA7L	-	FALSE
chr20	25427856	A	G	0.00094	GINS1	+	FALSE	AluSz	SINE,Alu
chr1	28833494	G	A	0.00122	SNHG3,RCC1	+	FALSE
chr1	6282383	T	C	0.00130	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	100615003	G	A	0.00046	TRMT13,LRRC39	+,-	FALSE
chr7	44917406	T	C	0.00021	PURB	-	TRUE	AluSz	SINE,Alu
chr1	87328397	A	T	0.00252	SEP15	-	FALSE
chrX	123045342	A	G	0.00381	XIAP	+	FALSE	(ATAA)n	SINE,Alu
chr1	168213516	A	G	0.00233		.	FALSE	AluSx1	SINE,Alu
chr1	94335333	G	T	0.00510	DNTTIP2	-	FALSE
chr3	195242526	C	T	3.14972E-05	PPP1R2	-	FALSE
chr3	100467676	A	T	0.00288	TFG	+	FALSE
chr1	78142911	T	C	0.00925	ZZZ3	-	TRUE	AluSx	SINE,Alu
chr14	24760808	C	T	0.00203	DHRS1	-	FALSE
chr3	15114317	T	C	0.00113	RBSN	-	TRUE	AluY	SINE,Alu
chr1	179989742	G	C	0.00019	CEP350	+	FALSE
chr2	217366499	A	G	0.00063		.	FALSE	AluSz	SINE,Alu
chr1	16933629	A	G	0.00299	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr19	59095573	A	G	0.00169	CENPBD1P1	+	TRUE	AluJb	SINE,Alu
chr4	109733172	T	C	0.00480	COL25A1	-	FALSE
chr19	9672919	T	C	0.00097		.	FALSE	AluSx3	SINE,Alu
chr1	9163110	T	C	4.21626E-05		.	FALSE	FRAM	SINE,Alu
chr1	21545089	C	T	0.00834	ECE1	-	FALSE	AluSx1	SINE,Alu
chr1	28836974	A	G	9.88453E-07	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr1	16893686	G	C	0.00296	NBPF1	-	FALSE
chr6	42856105	A	G	0.00972	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	70833400	C	T	0.00224	HHLA3	+	FALSE	LTR7	SINE,Alu
chr10	126677249	A	T	0.00762	CTBP2	-	FALSE
chr5	122359498	A	C	0.00038	PPIC	-	FALSE	(AC)n	SINE,Alu
chr2	37327666	T	C	0.00028		.	FALSE
chr1	28662105	A	G	9.98367E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr10	89623860	C	G	0.00071	PTEN	+	FALSE	(CGG)n	SINE,Alu
chr3	195694454	C	T	0.00307	SDHAP1	-	FALSE
chr1	145273345	T	C	0.00133	NBPF20,NOTCH2NL	+	FALSE
chr1	87573327	T	C	0.00571	HS2ST1	+	FALSE	(AT)n	SINE,Alu
chr2	277003	A	G	1.77913E-11	ACP1	+	FALSE
chr1	16889642	T	C	6.70250E-05	NBPF1	-	TRUE
chr9	132575828	A	T	0.00445	TOR1A	-	FALSE
chr1	10518052	T	C	0.00791		.	FALSE	AluJr	SINE,Alu
chr3	40577755	A	G	0.00044	ZNF621	+	TRUE	AluSz	SINE,Alu
chr6	42856954	A	G	0.00037	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr2	208619742	A	G	1.70106E-07	CCNYL1	+	TRUE	AluJb	SINE,Alu
chr1	36067817	T	C	7.91657E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	24861704	G	A	0.00345	RCAN3	+	FALSE
chr1	150937771	T	A	0.00026	CERS2	-	FALSE	(ATTTTTT)n	SINE,Alu
chr13	38936619	G	T	0.00212	UFM1	+	FALSE
chr1	9160958	T	C	3.87385E-05		.	FALSE	AluJb	SINE,Alu
chr15	41597437	T	A	0.00217		.	FALSE	AluSz6	SINE,Alu
chr4	248840	A	G	0.00655	ZNF876P	+	TRUE	AluYk3	SINE,Alu
chr1	28835937	A	G	2.00244E-07	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr2	55462751	T	A	0.00613	RPS27A	+	FALSE
chr14	50361171	C	T	0.00017	ARF6	+	FALSE	(T)n	SINE,Alu
chr1	31426815	A	G	0.00797	PUM1	-	FALSE
chr1	95362952	T	C	0.00155	CNN3	-	FALSE
chr1	171558516	C	T	4.87297E-05	PRRC2C	+	FALSE
chr3	195243006	C	A	7.17300E-06	PPP1R2	-	FALSE
chr1	3731965	G	A	0.00209	CEP104	-	FALSE
chr3	49067308	G	A	0.00278	QRICH1	-	FALSE
chr12	98942886	A	G	1.80851E-07	TMPO	+	TRUE	AluSc	SINE,Alu
chr2	3592615	T	C	0.00331	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr17	28575454	A	C	0.00470	BLMH	-	FALSE
chr1	32661600	C	T	0.00235	TXLNA	+	FALSE	(T)n	SINE,Alu
chr19	7084638	A	G	0.00024	ZNF557	+	TRUE	AluJb	SINE,Alu
chr1	231398555	A	G	0.00401	GNPAT	+	FALSE
chr3	183901281	G	A	4.84515E-09	AP2M1	+	FALSE
chr5	133738270	T	C	0.00067	CDKN2AIPNL	-	TRUE	FRAM	SINE,Alu
chr1	45476889	C	G	0.00969	HECTD3	-	FALSE
chr2	37872508	G	A	5.12140E-05	CDC42EP3	-	FALSE
chr2	85548076	A	T	0.00682	TGOLN2	-	FALSE
chr1	179042300	C	A	0.00491	FAM20B	+	FALSE
chr12	124146067	A	G	1.77884E-06	GTF2H3	+	TRUE	AluSx4	SINE,Alu
chr2	217366626	A	G	0.00057		.	FALSE	AluSz	SINE,Alu
chr4	40138676	A	G	0.00157	N4BP2	+	FALSE
chr1	46075664	A	G	0.00045	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	33149508	A	G	0.00871	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr17	40176809	A	T	0.00860	NKIRAS2	+	FALSE	AluSz	SINE,Alu
chr8	42043493	G	A	0.00045	PLAT	-	FALSE	MLT2C1	SINE,Alu
chr1	146650337	G	T	0.00589	PDIA3P1	+	FALSE
chr3	75779644	C	A	0.00177	ZNF717	-	FALSE
chr1	16952298	A	C	2.15086E-05	CROCCP2	-	FALSE
chr1	40537937	A	C	0.00091	CAP1	+	FALSE	(A)n	SINE,Alu
chr2	130900880	C	T	0.00044	CCDC74B	-	FALSE
chr2	196600548	G	T	0.00036	SLC39A10	+	FALSE
chr2	61278030	A	G	0.00218	PEX13	+	TRUE	AluY	SINE,Alu
chr6	150045919	T	C	0.00206	NUP43	-	TRUE	AluSq	SINE,Alu
chr3	123368013	A	G	0.00812	MYLK	-	FALSE
chr1	16892276	T	C	0.00236	NBPF1	-	FALSE
chr12	104186946	G	T	0.00523	NT5DC3	-	FALSE
chr5	79923998	T	C	0.00753	DHFR	-	TRUE	AluSp	SINE,Alu
chr1	1595540	T	C	0.00042	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	65897981	G	A	0.00653	LEPR,LEPROT	+	FALSE
chr1	144595935	G	A	0.00061	NBPF20	+	FALSE	AluJb	SINE,Alu
chr10	95163809	G	T	0.00453	MYOF	-	FALSE
chr3	195964298	A	G	0.00263		.	FALSE
chr3	98518157	A	T	8.60022E-05	DCBLD2	-	FALSE
chr1	211918115	C	T	0.00979	LPGAT1	-	FALSE	MER63D	SINE,Alu
chr17	40466890	G	T	0.00260	STAT3	-	FALSE	AluSc8	SINE,Alu
chr4	17803537	T	C	7.44979E-05	DCAF16	-	TRUE	AluY	SINE,Alu
chr2	99812978	A	G	0.00167	MRPL30	+	TRUE	AluJb	SINE,Alu
chr4	124237124	A	G	0.00119	SPATA5	+	TRUE	AluJr	SINE,Alu
chr4	17628548	A	G	0.00991		.	FALSE	AluSz	SINE,Alu
chr1	33147915	A	G	6.77632E-09	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr6	13788297	T	C	0.00077	MCUR1	-	TRUE	AluSx	SINE,Alu
chr3	195694454	C	T	0.00092	SDHAP1	-	FALSE
chr1	148010972	A	G	0.00068	NBPF8	-	FALSE
chr1	46269493	G	C	0.00233	MAST2	+	FALSE
chr1	116237496	T	A	0.00934	VANGL1	+	FALSE
chr1	36067784	T	C	0.00083	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	206579936	A	G	0.00424	SRGAP2	+	FALSE
chr19	13054924	A	C	0.00982	CALR	+	FALSE
chr1	6283305	T	C	0.00554	ICMT	-	TRUE	AluSx3	SINE,Alu
chr10	12292344	A	G	0.00434	CDC123	+	FALSE
chr1	19984461	C	T	0.00090	MINOS1-NBL1,NBL1	+	FALSE
chr4	17803748	T	A	0.00859	DCAF16	-	FALSE
chr1	6259025	C	T	0.00700	RPL22	-	FALSE
chr3	196080528	T	C	0.00700	UBXN7	-	TRUE	AluSx	SINE,Alu
chr3	73115786	T	C	3.88619E-05	PPP4R2	+	FALSE
chr1	6283260	T	C	0.00054	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	1647814	T	C	8.49337E-05	CDK11B,CDK11A	-	FALSE
chrX	24095066	G	T	0.00603	EIF2S3	+	FALSE
chr1	178887208	A	T	0.00239	RALGPS2	+	FALSE

RBP	GNL3
Knock-Method	siRNA
RBP Family	GN3L_Grn1
Biosample Name	ATCC ACS-1011
Tissue Type	Fibroblast
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	GEO
Profile ID	GSE150945
Platform	GPL11154
Pubmed ID	N.A.

GNL3 - Target Gene Network