RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr3	196728813	C	T	0.00068	MELTF	-	FALSE
chr5	74072648	T	A	0.00036	NSA2	+	FALSE
chr1	19542679	T	C	0.00738	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr3	41281407	G	T	0.00011	CTNNB1	+	FALSE
chr1	205687365	C	T	0.00071	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr1	212587320	T	C	0.00023	TMEM206	-	FALSE
chr1	26608016	G	A	1.44245E-06		.	FALSE
chr1	16889413	T	C	1.64789E-05	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	110136846	T	A	0.00639	GNAI3	+	FALSE
chr1	145290818	C	G	0.00287	NBPF20	+	FALSE
chr4	17802955	T	C	0.00071	DCAF16	-	FALSE	AluSz	SINE,Alu
chr1	45976257	C	A	0.00015	MMACHC	+	FALSE
chr1	28826118	A	G	0.00175	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr19	39433138	G	A	0.00276	FBXO17	-	FALSE	AluJb	SINE,Alu
chr1	10519936	T	C	0.00607		.	FALSE	AluJr	SINE,Alu
chr1	1169728	G	T	0.00745	B3GALT6	+	FALSE
chr1	10517485	T	C	0.00260		.	FALSE	AluSx1	SINE,Alu
chr10	101992298	T	C	0.00409	CWF19L1	-	TRUE	AluSq2	SINE,Alu
chr1	145512123	A	G	3.10159E-05	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr14	53243394	T	C	0.00957	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr1	327407	A	G	0.00752		.	FALSE
chr4	128756632	A	G	0.00602		.	FALSE	AluSx	SINE,Alu
chr1	143189473	C	A	0.00572	LOC102723769	-	FALSE
chr5	96368471	G	T	3.92809E-06		.	FALSE
chr1	201975173	G	T	0.00053	RNPEP	+	FALSE
chr19	53997266	A	G	0.00173	ZNF813	+	FALSE	L1M3	SINE,Alu
chr1	27202831	T	C	0.00392		.	FALSE	AluSq2	SINE,Alu
chr1	19542458	T	C	0.00988	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	28261662	A	G	0.01000	SMPDL3B	+	FALSE
chr1	47142538	G	A	0.00870	EFCAB14-AS1,EFCAB14	+,-	FALSE
chr16	10625058	T	C	2.66942E-12	EMP2	-	TRUE	AluSx3	SINE,Alu
chr2	206987136	T	C	0.00189		.	FALSE	AluSx	SINE,Alu
chr2	242176182	G	A	2.43141E-09	HDLBP	-	FALSE
chr19	59095126	G	T	0.00303	CENPBD1P1	+	FALSE
chr2	232319583	C	A	0.00801	NCL	-	FALSE	A-rich	SINE,Alu
chr3	125248838	A	T	0.00899	OSBPL11	-	FALSE
chr1	228880021	C	T	4.50271E-05	RHOU	+	FALSE
chr1	10517613	T	C	0.00499		.	FALSE	AluSx1	SINE,Alu
chr3	124948047	C	G	0.00670	ZNF148	-	FALSE
chr5	125961816	A	G	0.00013	PHAX	+	TRUE	FLAM_C	SINE,Alu
chr17	55752444	C	T	0.00000	MSI2	+	FALSE
chrX	3526613	C	T	0.00930	PRKX	-	FALSE
chr2	242173247	G	A	0.00345	HDLBP	-	FALSE
chr17	49042394	T	C	0.00015	SPAG9	-	TRUE	AluJb	SINE,Alu
chr12	48539888	C	A	0.00088	PFKM	+	FALSE
chr3	45721990	A	G	0.00779	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr2	201735790	G	C	0.00671	PPIL3	-	FALSE
chr1	45975345	A	G	0.00227	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	1255401	G	T	0.00216	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr1	1419690	A	G	0.00464	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr8	26435508	C	T	0.00106	DPYSL2	+	FALSE	(TC)n	SINE,Alu
chr10	70502288	G	A	0.00347	CCAR1	+	FALSE
chr3	10193796	A	G	2.82806E-06	VHL	+	TRUE	AluSx	SINE,Alu
chr1	44818549	C	T	0.00108	ERI3	-	FALSE
chr1	145323656	A	T	3.43611E-06	NBPF20,NBPF10	+	FALSE
chr1	1668943	A	C	0.00640	SLC35E2	-	FALSE
chr8	30536554	T	C	0.00023	GSR	-	TRUE	AluSp	SINE,Alu
chr3	148863151	A	G	0.00062	HPS3	+	FALSE
chr1	17248500	A	G	0.00866	CROCC	+	FALSE
chr6	42047426	A	G	0.00676	TAF8	+	TRUE	AluSz6	SINE,Alu
chr4	128756628	A	G	0.00011		.	FALSE	AluSx	SINE,Alu
chr4	6675519	A	C	0.00064	LOC105374366	-	FALSE
chr2	219146868	T	C	0.00764	PNKD,TMBIM1	+,-	FALSE
chrX	77083952	T	C	0.00045	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	225974645	A	G	0.00984	SRP9	+	TRUE	AluJr	SINE,Alu
chr1	1653093	A	G	0.00768	CDK11B,CDK11A	-	FALSE	L2	SINE,Alu
chr3	73115786	T	C	0.00470	PPP4R2	+	FALSE
chr1	204095426	C	T	0.00481	SOX13	+	FALSE
chr1	155161737	G	C	0.00482	MUC1	-	FALSE
chr1	36535560	A	G	0.00059		.	FALSE	AluSx1	SINE,Alu
chr12	7052982	T	G	0.00199	C12orf57	+	FALSE	U7	SINE,Alu
chr2	174090321	C	A	0.00563	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr1	36770064	T	C	0.00086	THRAP3	+	FALSE	(T)n	SINE,Alu
chr3	15113694	T	C	0.00622	RBSN	-	TRUE	AluSz6	SINE,Alu
chr17	65334967	T	C	0.00045	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	36068275	T	C	0.00625	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	182360928	A	C	0.00635	GLUL	-	FALSE
chr1	142804438	G	T	0.00522		.	FALSE
chr1	31905886	C	A	0.00226	SERINC2	+	FALSE
chr5	79279309	T	G	0.00167	MTX3	-	FALSE
chr2	30863651	A	T	0.00366	LCLAT1	+	FALSE
chr17	37006249	T	C	0.00774		.	FALSE	AluSx	SINE,Alu
chr1	36522460	A	G	0.00407		.	FALSE	AluSc	SINE,Alu
chrX	77083939	T	C	5.71267E-05	MAGT1	-	TRUE	AluSz	SINE,Alu
chr17	78294253	A	G	0.00031	RNF213	+	TRUE	AluSp	SINE,Alu
chr19	63633	C	T	0.00999	WASH5P	-	FALSE	MLT1K	SINE,Alu
chr5	40830064	T	C	0.00554		.	FALSE	AluSp	SINE,Alu
chr14	75202312	A	G	3.27721E-05	FCF1	+	TRUE	AluSc	SINE,Alu
chr16	10623576	T	C	0.00013	EMP2	-	TRUE	AluSp	SINE,Alu
chr7	6442891	G	A	0.00134	RAC1	+	FALSE
chr19	58356478	A	G	0.00030	ZNF587B	+	TRUE	AluSx	SINE,Alu
chr5	40832555	A	T	5.95918E-06	RPL37	-	FALSE
chr3	43098971	G	T	0.00118	FAM198A	+	FALSE	L1ME3G	SINE,Alu
chr1	6683581	A	C	0.00189	PHF13	+	FALSE
chr1	38174987	T	C	0.00350	CDCA8	+	FALSE
chr3	57743171	C	T	1.04824E-07	SLMAP	+	FALSE
chr1	16890598	T	A	0.00428	NBPF1	-	FALSE
chr1	26144435	C	G	0.00131	SEPN1	+	FALSE
chr3	142772593	G	A	0.00135	U2SURP	+	FALSE
chr1	9161245	T	C	0.00071		.	FALSE	AluSx	SINE,Alu
chr1	145512944	A	G	0.00110	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	206516261	C	T	0.00020	SRGAP2	+	FALSE
chr5	122165472	C	T	0.00147	SNX2	+	FALSE	(AC)n	SINE,Alu
chr1	200521412	G	A	0.00110	KIF14	-	FALSE
chr11	119533726	A	G	0.00169	NECTIN1	-	FALSE
chr1	68940566	A	C	0.00126	DEPDC1	-	FALSE
chr1	1595602	A	G	9.14189E-05	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr1	92977228	T	C	0.00206	EVI5	-	TRUE	AluJr	SINE,Alu
chr10	17362784	A	G	0.00261	ST8SIA6	-	FALSE
chr7	35737649	G	A	0.00566	LOC101930085	+	FALSE	AluSz	SINE,Alu
chr1	206578650	G	C	0.00159	SRGAP2	+	FALSE
chr5	68426312	G	A	0.00344	SLC30A5	+	FALSE
chr1	75196073	C	T	0.00159	CRYZ	-	FALSE
chr3	48787051	T	C	0.00105	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	10517623	T	C	8.06723E-05		.	FALSE	AluSx1	SINE,Alu
chr1	120163248	G	A	0.00711	ZNF697	-	FALSE
chr4	57326879	A	G	0.00198	PAICS	+	TRUE	AluSx1	SINE,Alu
chr6	134492481	A	C	0.00340	SGK1	-	FALSE
chr5	141690819	G	A	0.00062	SPRY4	-	FALSE
chr1	115299504	G	T	0.00067	CSDE1	-	FALSE
chr4	177251290	G	A	0.00580	SPCS3	+	FALSE
chr5	148382005	C	A	8.42472E-06	SH3TC2	-	FALSE
chr1	120166681	G	A	0.00879	ZNF697	-	FALSE
chr4	152025795	T	A	0.00516	RPS3A	+	FALSE
chr1	6583592	T	C	0.00939	NOL9	-	TRUE	AluSq	SINE,Alu
chr2	191829133	G	A	0.00097	GLS	+	FALSE
chr2	201842323	T	C	0.00390	FAM126B	-	TRUE	AluJb	SINE,Alu
chr1	23409538	G	A	0.00464	KDM1A	+	FALSE
chr15	63363384	C	A	0.00161	TPM1	+	FALSE
chr1	115299508	A	T	0.00070	CSDE1	-	FALSE
chr1	203767822	T	G	0.00064	ZC3H11A,ZBED6	+	FALSE
chr16	87440117	C	T	1.93168E-06	ZCCHC14	-	FALSE
chr1	6282371	T	C	0.00897	ICMT	-	TRUE	AluSz	SINE,Alu
chr4	103809324	A	C	0.00658	CISD2,SLC9B1	+,-	FALSE
chr3	179117164	T	C	0.00234	GNB4	-	FALSE	AluSz	SINE,Alu
chr2	206987108	T	C	0.00015		.	FALSE	AluSx	SINE,Alu
chr2	106510201	C	A	0.00638	NCK2	+	FALSE
chr6	33377511	T	C	5.31992E-06		.	FALSE	(TG)n	SINE,Alu
chr1	10518688	T	C	4.38215E-07		.	FALSE	AluSx1	SINE,Alu
chr1	15989141	C	G	0.00677		.	FALSE
chr6	42854664	A	G	5.02680E-07	RPL7L1	+	TRUE	AluSc	SINE,Alu
chr5	178508569	C	T	0.00571	ZNF354C	+	FALSE
chr1	155032752	A	G	0.00347	LOC100505666,ADAM15	+,-	FALSE
chr1	38463504	C	T	0.00068	FHL3	-	FALSE
chr1	10517672	T	C	0.00257		.	FALSE	AluSx1	SINE,Alu
chr1	145369709	A	G	0.00019	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	158424898	G	A	0.00153		.	FALSE
chr2	99812289	A	G	0.00040	MRPL30	+	TRUE	AluSx	SINE,Alu
chr5	79923912	T	C	0.00037	DHFR	-	TRUE	AluSp	SINE,Alu
chr1	24746451	A	G	0.00683	NIPAL3	+	TRUE	AluSc	SINE,Alu
chr1	214524531	T	C	0.00753	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	144053567	C	T	0.00037		.	FALSE
chr1	109746825	A	G	0.00094	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	145116142	A	T	0.00570	NBPF20,SEC22B	+	FALSE
chr4	123859284	C	T	0.00034	SPATA5	+	FALSE
chr3	194999609	G	T	0.00796	ACAP2	-	FALSE
chr1	145688973	A	G	0.00283	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr11	111930765	T	C	0.00764	DLAT	+	FALSE
chr1	160967856	T	C	0.00116	F11R	-	TRUE	AluSp	SINE,Alu
chr20	62598815	C	T	0.00711	ZNF512B	-	FALSE
chr17	4928416	A	G	0.00941	KIF1C	+	TRUE	AluSz	SINE,Alu
chr4	152583924	A	T	0.00284	FAM160A1	+	FALSE
chr5	110463621	G	T	0.00786	WDR36	+	FALSE	(T)n	SINE,Alu
chr1	206579936	A	G	0.00424	SRGAP2	+	FALSE
chr2	128601583	T	C	0.00550		.	FALSE	AluJr	SINE,Alu
chr19	42375586	A	G	0.00404		.	FALSE	AluSx	SINE,Alu
chr3	150262004	A	T	0.00167	SERP1	-	FALSE
chrM	2619	A	T	0.00012	RNR2	+	FALSE	LSU-rRNA_Hsa	SINE,Alu
chr1	38327545	T	C	0.00602	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr4	13601337	G	A	7.28365E-09	BOD1L1	-	FALSE
chr4	56295160	T	A	0.00576	CLOCK	-	FALSE	(T)n	SINE,Alu
chr3	124732406	C	A	0.00975	HEG1	-	FALSE
chr1	145291494	A	G	0.00738	NBPF20	+	FALSE	MIRb	SINE,Alu
chr1	10240685	C	T	0.00422	UBE4B	+	FALSE
chr1	156692049	A	T	6.25184E-05	ISG20L2	-	FALSE
chr1	36316571	A	C	0.00893	AGO4	+	FALSE
chr1	16892135	G	A	0.00182	NBPF1	-	FALSE
chr1	200522059	A	T	0.00163	KIF14	-	FALSE	AluSg	SINE,Alu
chr1	90049040	A	G	0.00190	LRRC8B	+	FALSE
chr5	40832551	A	T	5.78892E-08	RPL37	-	FALSE
chr1	46830110	A	G	0.00283	NSUN4	+	TRUE	AluSx1	SINE,Alu
chr1	3548832	G	C	0.00464	WRAP73	-	FALSE
chr1	115313039	A	G	0.00895	SIKE1	-	FALSE
chr7	66421684	T	G	0.00042	TMEM248	+	FALSE	AluJr	SINE,Alu
chr1	145513113	A	G	0.00505	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	182568729	C	G	0.00012	RGS16	-	FALSE
chr16	48386425	A	G	0.00152	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr20	54943385	C	A	0.00844	FAM210B	+	FALSE
chr1	145509570	A	G	0.00028	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr2	29023124	G	T	0.00477	PPP1CB	+	FALSE
chr1	33149495	A	G	0.00652	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	157963369	C	G	0.00667	KIRREL	+	FALSE
chr1	145513114	A	G	0.00026	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr3	179116220	T	C	0.00233	GNB4	-	TRUE	AluSz6	SINE,Alu
chr1	114940246	C	A	0.00628	TRIM33	-	FALSE
chr2	101587455	C	T	0.00178	NPAS2	+	FALSE
chr3	197612334	A	G	0.00070		.	FALSE	AluSp	SINE,Alu
chr1	35649749	C	A	0.00597	SFPQ	-	FALSE
chr8	101269589	A	T	0.00281	RNF19A	-	FALSE
chr4	113198883	G	T	0.00905	TIFA	-	FALSE
chr14	53242639	T	C	1.43651E-05	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr20	25428547	A	G	7.92315E-05	GINS1	+	TRUE	AluJb	SINE,Alu
chr6	42856039	A	G	1.34846E-05	RPL7L1	+	TRUE	AluSz	SINE,Alu
chrX	123046779	A	G	0.00629	XIAP	+	TRUE	AluSz	SINE,Alu
chr14	50320630	G	C	0.00316		.	FALSE	7SLRNA	SINE,Alu
chr2	103333653	T	C	0.00426	MFSD9	-	FALSE	AluYm1	SINE,Alu
chr3	24019976	C	A	0.00485	NR1D2	+	FALSE
chr1	32661600	C	T	0.00235	TXLNA	+	FALSE	(T)n	SINE,Alu
chr4	7761114	G	A	8.00249E-13	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	225683184	G	T	0.00741	ENAH	-	FALSE
chr1	145441843	G	A	0.00744	NBPF20,NBPF10,TXNIP	+	FALSE
chr1	146215189	G	C	0.00226	NBPF20,NBPF10,NBPF25P	+	FALSE
chr19	58357268	A	G	0.00099	ZNF587B	+	TRUE	AluSx3	SINE,Alu
chr3	189713205	T	C	4.97145E-05	P3H2	-	FALSE
chr17	43364288	A	G	0.00345	MAP3K14	-	FALSE
chr1	25570692	C	T	0.00095	RSRP1	-	FALSE
chr3	50296329	G	A	0.00884	GNAI2	+	FALSE
chr5	31553968	T	C	0.00555	C5orf22	+	FALSE
chr1	35648710	G	C	0.00377	SFPQ	-	FALSE
chr3	12942852	C	A	0.00458	IQSEC1	-	FALSE
chr3	195395399	G	A	0.00556	SDHAP2	+	FALSE
chr8	117784431	T	A	0.00422	UTP23	+	FALSE	AluSz6	SINE,Alu
chr19	2426238	T	G	0.00129	TIMM13,TMPRSS9	+,-	FALSE
chr7	120740103	G	T	0.00601	CPED1	+	FALSE
chr1	149913731	T	C	0.00198	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr4	7764148	G	A	2.22190E-11	AFAP1,AFAP1-AS1	+,-	FALSE
chr9	103064530	G	A	0.00036	TEX10	-	FALSE
chr1	89447720	G	A	0.00029	KYAT3,RBMXL1	-	FALSE
chr2	74442548	C	T	0.00721		.	FALSE
chr1	143399383	T	A	0.00053		.	FALSE	L1MC4	SINE,Alu
chr2	113509977	C	T	0.00197	CKAP2L	-	FALSE
chr1	27205214	T	C	0.00048		.	FALSE	AluSc	SINE,Alu
chr1	327441	A	G	1.08612E-09		.	FALSE
chr1	23636277	A	T	0.00295	HNRNPR	-	FALSE
chr9	130209956	A	T	0.00221	RPL12	-	FALSE
chr1	20826781	C	T	9.86003E-06	MUL1	-	FALSE
chr6	42047404	A	G	0.00182	TAF8	+	TRUE	AluSz6	SINE,Alu
chr1	11783041	A	G	0.00036		.	FALSE	AluSx	SINE,Alu
chr5	37290492	T	C	8.25709E-07		.	FALSE	AluSz	SINE,Alu
chr1	59004766	G	T	0.00213	OMA1	-	FALSE
chr17	49042289	G	T	0.00737	SPAG9	-	FALSE	AluJb	SINE,Alu
chr1	144931101	G	A	0.00358	NBPF20,PDE4DIP	+,-	FALSE
chr1	35817022	T	A	0.00072	ZMYM4	+	FALSE
chr1	12058878	T	C	0.00110	MFN2	+	FALSE
chr1	220323448	C	T	0.00223	RAB3GAP2	-	FALSE
chr4	89181477	T	C	7.00483E-05	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr6	33281842	G	T	0.00514		.	FALSE
chr1	16918734	G	C	0.00083	NBPF1	-	FALSE
chr1	114443609	A	G	0.00035	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	167759573	T	C	0.00895	MPZL1	+	FALSE
chr1	78142856	T	C	0.00086	ZZZ3	-	TRUE	AluSx	SINE,Alu
chr3	44791293	A	T	0.00031	KIAA1143	-	FALSE	AluJr	SINE,Alu
chr1	201438095	C	G	3.49736E-05	PHLDA3	-	FALSE
chr1	1252441	T	C	0.00086	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr1	112266787	G	T	0.00642	FAM212B	-	FALSE
chr8	17796338	G	T	4.50000E-10	PCM1	+	FALSE
chr1	203766872	G	A	1.42518E-06	ZC3H11A,ZBED6	+	FALSE
chr1	93827995	C	T	0.00714	DR1	+	FALSE

RBP	MECP2
Knock-Method	siRNA
RBP Family	MBD
Biosample Name	iPSC
Tissue Type	Brain
Biosample Type	Cell line
# of Control	3
# of Treat	3
Species	Human
Data Source	GEO
Profile ID	GSE123753
Platform	GPL16791
Pubmed ID	32209477

MECP2 - Target Gene Network