RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	86252214	T	C	0.00930	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr1	22419433	T	G	0.00200	CDC42	+	FALSE
chr6	116256595	C	A	5.71236E-05		.	FALSE
chr16	10625266	T	C	0.00587	EMP2	-	TRUE	AluSx	SINE,Alu
chr5	34906156	T	C	2.52494E-05	RAD1	-	TRUE	AluSx1	SINE,Alu
chr1	36522460	A	G	0.00407		.	FALSE	AluSc	SINE,Alu
chr1	78184325	A	G	0.00150	USP33	-	FALSE
chr2	68402797	T	A	0.00656	PNO1	+	FALSE
chr15	83685469	T	C	0.00976	BTBD1	-	FALSE
chr1	1650832	A	G	0.00065	CDK11B,CDK11A	-	FALSE
chr9	37503313	A	G	0.00584	POLR1E	+	TRUE	AluJb	SINE,Alu
chr1	67874689	T	C	0.00146	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr11	62299945	A	C	0.00314	AHNAK	-	FALSE
chr2	37330476	T	C	0.00269		.	FALSE	AluSq2	SINE,Alu
chr5	149823789	G	T	0.00793		.	FALSE
chr1	40430967	G	T	0.00567	MFSD2A	+	FALSE
chr2	46612340	G	T	0.00094	EPAS1	+	FALSE
chr2	114220055	T	C	9.23000E-05	CBWD2	+	FALSE
chr2	198416724	A	T	0.00378	HSPE1-MOB4,MOB4	+	FALSE
chr1	35649749	C	A	0.00597	SFPQ	-	FALSE
chr1	65692498	T	C	0.00356	AK4	+	FALSE	(T)n	SINE,Alu
chr1	143189486	A	G	0.00122	LOC102723769	-	FALSE
chr1	173793106	C	T	0.00772	CENPL	-	FALSE
chr4	88061645	T	A	0.00049	AFF1	+	FALSE	(TATAT)n	SINE,Alu
chr2	197021372	T	A	0.00285	STK17B	-	FALSE
chr8	128944719	A	T	0.00093	PVT1	+	FALSE
chr6	31595882	C	A	0.00450		.	FALSE
chr3	40577761	A	G	0.00701	ZNF621	+	TRUE	AluSz	SINE,Alu
chr3	191097966	T	C	1.34670E-13	CCDC50	+	FALSE
chr1	27107948	G	A	0.00177	ARID1A	+	FALSE
chr1	39470978	T	A	0.00378	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr2	176791759	A	C	0.00232	LNPK	-	FALSE	L2b	SINE,Alu
chr3	195242526	C	T	3.14972E-05	PPP1R2	-	FALSE
chr1	222713503	C	G	0.00860	HHIPL2	-	FALSE
chr1	36067817	T	C	0.00120	PSMB2	-	TRUE	AluSz	SINE,Alu
chr5	149364145	A	G	0.00383	SLC26A2	+	TRUE	AluSc8	SINE,Alu
chr6	57034841	G	T	0.00581	ZNF451,LOC101927211	+,-	FALSE
chr1	20510981	G	C	0.00197	UBXN10-AS1	-	FALSE
chr4	128757415	A	G	0.00367		.	FALSE	AluY	SINE,Alu
chr15	42550445	T	C	0.00360	TMEM87A	-	FALSE
chr17	34942575	G	A	0.00374	GGNBP2	+	FALSE	A-rich	SINE,Alu
chr3	88101339	T	C	0.00531	CGGBP1	-	FALSE
chr15	65442546	T	C	0.00564	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	144595886	G	A	0.00205	NBPF20	+	FALSE	AluJb	SINE,Alu
chr1	33148623	A	G	0.00221	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr17	7760704	A	G	0.00297	NAA38	-	FALSE
chr3	33893987	A	G	0.00123	PDCD6IP	+	FALSE
chr3	44791293	A	T	0.00031	KIAA1143	-	FALSE	AluJr	SINE,Alu
chr1	32372360	C	T	0.00697	PTP4A2	-	FALSE	(CA)n	SINE,Alu
chr1	19585519	A	G	6.02134E-06	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr1	180082702	G	C	0.00019	CEP350	+	FALSE
chr1	143135063	C	A	0.00397	LOC102723769	-	FALSE
chr1	207221096	G	A	0.00452	YOD1	-	FALSE
chr2	201774600	T	C	1.56082E-05		.	FALSE	AluJr4	SINE,Alu
chr1	19542463	T	C	0.00182	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	193222534	G	T	0.00504	CDC73	+	FALSE	(TGT)n	SINE,Alu
chr17	74561213	A	G	0.00241	SNHG16	+	FALSE
chr1	46075783	A	G	0.00755	NASP	+	TRUE	AluSx4	SINE,Alu
chr7	72480095	A	G	0.00590	PMS2P2	+	FALSE
chr4	17803748	T	A	0.00859	DCAF16	-	FALSE
chr3	99517466	G	A	0.00088	MIR548G	-	FALSE	(TG)n	SINE,Alu
chr2	38522141	G	T	0.00147	ATL2	-	FALSE
chr1	145512074	A	G	0.00014	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	53359745	A	G	0.00661	ZYG11A	+	TRUE	AluSx4	SINE,Alu
chr1	1152309	A	T	0.00035	SDF4	-	FALSE
chr1	101443431	C	T	0.00013	SLC30A7	+	FALSE	AluSq2	SINE,Alu
chr3	10142949	C	T	0.00612	FANCD2,FANCD2OS	+,-	FALSE
chr1	55319888	T	G	0.00000	DHCR24	-	FALSE
chr1	145688973	A	G	0.00017	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	9324213	C	T	0.00063	H6PD	+	FALSE
chr5	40835321	A	T	0.00526	RPL37	-	FALSE
chr5	53842079	C	T	0.00067	SNX18	+	FALSE
chr1	193055149	A	G	0.00340	TROVE2	+	FALSE
chr3	141879765	T	C	0.00212	GK5	-	TRUE	AluJr	SINE,Alu
chr1	19585493	A	G	3.52757E-05	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr4	17803673	T	C	0.00206	DCAF16	-	TRUE	AluY	SINE,Alu
chr7	75958151	G	C	0.00250	YWHAG	-	FALSE
chrX	118920477	A	T	0.00529	RPL39	-	FALSE
chr1	44463185	T	G	0.00397	SLC6A9	-	FALSE
chr2	208619590	A	G	0.00274	CCNYL1,MIR4775	+	TRUE	EutTc1-N2	SINE,Alu
chr2	74442407	A	G	0.00384	MTHFD2	+	FALSE
chr3	192515557	G	A	0.00130	MB21D2	-	FALSE
chr1	56961756	A	G	0.00263	PLPP3	-	FALSE
chr4	1006333	G	A	0.00117	FGFRL1	+	FALSE	(CTG)n	SINE,Alu
chr5	37291636	T	C	0.00518		.	FALSE	AluSx3	SINE,Alu
chr1	144931330	C	T	0.00479	NBPF20,PDE4DIP	+,-	FALSE
chr19	39433141	A	G	0.00224	FBXO17	-	FALSE	AluJb	SINE,Alu
chr3	73116347	T	A	0.00109	PPP4R2	+	FALSE
chr1	16576836	A	G	0.00885	FBXO42	-	FALSE
chr2	217366866	A	G	0.00247		.	FALSE	AluSz6	SINE,Alu
chr3	196078364	G	A	0.00290		.	FALSE	GA-rich	SINE,Alu
chr1	77556766	T	A	0.00576	PIGK	-	FALSE
chr22	33257373	G	A	0.00581	SYN3,TIMP3	+,-	FALSE
chr1	1656557	T	C	0.00012	SLC35E2	-	TRUE	AluSz	SINE,Alu
chr1	40214333	A	G	0.00112	PPIE	+	TRUE	AluSq2	SINE,Alu
chr1	150548881	G	A	9.52924E-05	MCL1	-	FALSE
chr1	85786957	T	G	0.00959	DDAH1	-	FALSE
chr2	100897573	G	A	0.00231	LONRF2	-	FALSE
chr1	92862904	A	G	0.00279		.	FALSE	AluJr	SINE,Alu
chr3	179042832	A	G	0.00308	ZNF639	+	TRUE	AluSp	SINE,Alu
chr1	36921372	A	T	0.00259	MRPS15	-	FALSE
chr19	42375549	A	G	4.56329E-05		.	FALSE	AluSx	SINE,Alu
chr7	65618249	A	G	0.00785	CRCP	+	TRUE	AluSp	SINE,Alu
chr1	204524842	A	G	0.00044	MDM4	+	TRUE	AluSx	SINE,Alu
chr2	69746296	C	T	0.00620	AAK1	-	FALSE
chr1	16933135	G	T	0.00363	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	121115958	T	C	0.00860	SRGAP2-AS1,SRGAP2D,SRGAP2B,SRGAP2C	+,-	FALSE
chr3	5026731	C	T	0.00824	BHLHE40	+	FALSE
chr1	179077613	T	C	0.00731	ABL2	-	FALSE
chr3	196557356	T	A	0.00032	PAK2	+	FALSE
chr1	120695202	C	A	0.00033		.	FALSE
chr1	145689701	A	G	0.00765	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr5	37291482	T	C	0.00146		.	FALSE	AluSx3	SINE,Alu
chr12	96661613	A	G	0.00183	ELK3	+	FALSE
chr1	27205214	T	C	0.00799		.	FALSE	AluSc	SINE,Alu
chr1	9162223	T	C	0.00997		.	FALSE	AluSx	SINE,Alu
chr15	63616883	A	T	0.00036	CA12	-	FALSE
chr4	89181478	T	C	0.00656	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr1	115299504	G	T	0.00067	CSDE1	-	FALSE
chr1	21810693	A	G	0.00370	NBPF3	+	FALSE	L1MC4	SINE,Alu
chr8	8750467	A	G	0.00131	MFHAS1	-	FALSE
chr1	15909744	C	T	0.00100	AGMAT	-	FALSE
chr1	244219904	T	G	0.00482	ZBTB18	+	FALSE
chr3	23958355	C	T	0.00997	NKIRAS1,RPL15	+,-	FALSE
chr1	24798499	T	C	0.00028	NIPAL3	+	FALSE	(T)n	SINE,Alu
chr5	180262080	A	G	0.00259	LINC00847	+	TRUE	MLT2B3	SINE,Alu
chr3	195243012	A	C	0.00054	PPP1R2	-	FALSE
chr12	98942885	A	G	1.31269E-05	TMPO	+	TRUE	AluSc	SINE,Alu
chr3	39138082	C	T	8.26379E-05	WDR48	+	FALSE
chr11	76733945	A	T	0.00931	ACER3	+	FALSE	A-rich	SINE,Alu
chr1	150337289	G	T	0.00020	RPRD2	+	FALSE
chr2	37331037	T	C	0.00036		.	FALSE	AluSx1	SINE,Alu
chr1	24989266	A	T	0.00392	SRRM1	+	FALSE
chr1	10520072	T	C	0.00226		.	FALSE	AluSx	SINE,Alu
chr1	158067060	T	A	0.00114	KIRREL	+	FALSE
chr2	232028396	A	G	0.00701	PSMD1	+	FALSE
chr1	180169330	C	T	0.00374	FLJ23867	+	FALSE	MIR	SINE,Alu
chr1	241794056	C	A	0.00753	OPN3,CHML	-	FALSE
chr3	10290515	G	A	0.00904	TATDN2	+	FALSE
chr1	45975286	A	G	0.00200	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	114443458	A	G	0.00320	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	32661594	C	T	0.00528	TXLNA	+	FALSE	(T)n	SINE,Alu
chr1	201846675	C	T	0.00146	IPO9	+	FALSE
chr6	108364582	T	C	0.00577	OSTM1	-	FALSE
chr1	100548868	T	C	8.06321E-05	MFSD14A	+	FALSE
chr6	13788200	T	C	0.00879	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	19543456	T	C	0.00451	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	567783	T	C	0.00817	MIR6723	-	FALSE
chr1	16890320	T	C	0.00045	NBPF1	-	FALSE
chr1	9160900	T	C	0.00542		.	FALSE	AluJb	SINE,Alu
chr15	49283066	T	G	0.00065	SECISBP2L	-	FALSE
chr16	81064534	A	G	0.00480	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	209605640	A	C	0.00581	MIR205HG	+	FALSE	(AGC)n	SINE,Alu
chr2	3607238	C	T	0.00222	RNASEH1-AS1	+	FALSE
chr1	16889413	T	C	1.64789E-05	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	8921471	C	T	6.67995E-05	ENO1	-	FALSE
chr1	150937771	T	A	0.00026	CERS2	-	FALSE	(ATTTTTT)n	SINE,Alu
chr1	26755510	A	G	0.00013	LIN28A	+	TRUE	AluSc	SINE,Alu
chr5	94050487	T	A	0.00380	MCTP1	-	FALSE
chr1	20826788	A	T	6.12716E-05	MUL1	-	FALSE
chr6	42856978	A	G	0.00061	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr2	171608711	T	A	0.00492	LOC101926913	-	FALSE
chr1	16932809	C	T	0.00074	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr17	28506279	G	A	0.00634	NSRP1	+	FALSE
chr1	171486912	G	A	0.00866	PRRC2C	+	FALSE
chr1	6583592	T	C	0.00939	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	10502831	A	G	0.00193	APITD1,APITD1-CORT	+	FALSE
chr1	148010952	C	T	0.00393	NBPF8	-	FALSE
chr16	48387238	A	G	0.00013	LONP2,MIR5095	+	TRUE	AluJb	SINE,Alu
chr5	34906661	T	C	9.12853E-06	RAD1	-	TRUE	AluJo	SINE,Alu
chr2	65496144	A	G	0.00883	ACTR2	+	FALSE
chr12	123346990	G	T	0.00055	HIP1R	+	FALSE
chr1	115249843	G	A	0.00218	NRAS	-	FALSE
chr1	75190452	C	T	4.33030E-05	CRYZ	-	FALSE
chr4	95586727	G	T	0.00996	PDLIM5	+	FALSE
chr3	49762662	G	T	6.99764E-06	IP6K1	-	FALSE
chr1	6730782	C	T	0.00807	DNAJC11	-	FALSE
chr5	133918134	G	T	0.00404	JADE2	+	FALSE
chr11	118880839	A	G	0.00922	CCDC84	+	TRUE	AluJb	SINE,Alu
chr2	217366515	A	G	0.00357		.	FALSE	AluSz	SINE,Alu
chr7	48146088	A	G	0.00825	UPP1	+	TRUE	AluSq	SINE,Alu
chr2	178406768	T	A	0.00416	AGPS	+	FALSE
chr1	25893932	T	C	0.00866	LDLRAP1	+	FALSE
chr1	38327457	T	C	0.00305	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr1	168220364	A	G	6.18665E-05		.	FALSE	AluSz6	SINE,Alu
chr1	10042988	A	G	0.00359	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr2	234386134	A	G	0.00196	USP40	-	FALSE
chr2	173462230	G	T	0.00100	PDK1	+	FALSE	MIRc	SINE,Alu
chr1	46075777	A	G	0.00268	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	94351064	A	T	0.00620	GCLM	-	FALSE
chr3	39452772	A	G	0.00127	RPSA	+	FALSE
chr1	32373437	G	A	1.22125E-14	PTP4A2	-	FALSE
chr1	158057633	C	G	0.00031	KIRREL	+	FALSE
chr1	145441841	A	T	0.00636	NBPF20,NBPF10,TXNIP	+	FALSE
chr3	9934605	T	C	3.00360E-07	JAGN1	+	FALSE
chr5	65120054	C	T	0.00625	NLN	+	FALSE
chr1	26755291	A	G	0.00044	LIN28A	+	TRUE	AluSx1	SINE,Alu
chr1	95362949	A	T	0.00114	CNN3	-	FALSE	(A)n	SINE,Alu
chr8	12879707	T	G	0.00780	KIAA1456	+	FALSE
chr1	33149376	A	G	0.00519	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	9161245	T	C	0.00071		.	FALSE	AluSx	SINE,Alu
chr3	40503562	G	A	0.00017	RPL14	+	FALSE
chr1	45975498	A	G	0.00018	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	118502684	G	A	0.00682	WDR3,SPAG17	+,-	FALSE
chr7	135285707	G	A	0.00084	NUP205	+	FALSE
chr1	1597423	C	T	1.10134E-13	CDK11B,SLC35E2B	-	FALSE
chr1	9642830	T	A	0.00059	SLC25A33	+	FALSE
chr1	931935	T	C	0.00796		.	FALSE
chr16	87443734	C	T	0.00074	ZCCHC14	-	FALSE
chr1	6160958	A	G	0.00967	KCNAB2	+	FALSE
chr1	165877720	A	T	9.21169E-05	UCK2	+	FALSE
chr3	17199207	T	A	0.00075	TBC1D5	-	FALSE	A-rich	SINE,Alu
chr1	67874854	T	C	0.00358	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	36068227	T	C	0.00398	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	9629305	A	T	0.00591	ADAM17	-	FALSE
chr2	207942527	A	T	0.00107	KLF7	-	FALSE
chr5	43290210	A	G	0.00565	HMGCS1	-	FALSE	A-rich	SINE,Alu
chr1	16891333	C	T	0.00281	NBPF1	-	FALSE
chr6	149915565	A	G	0.00198	RPS18P9	+	FALSE
chr2	230876757	G	C	0.00321	FBXO36	+	FALSE
chr1	179326418	A	G	0.00626	SOAT1	+	TRUE	AluSg	SINE,Alu
chr8	11666384	C	T	0.00029	FDFT1	+	FALSE
chr12	133298254	A	G	1.64181E-10	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	6282361	T	C	0.00634	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	26449336	A	G	0.00343	PDIK1L	+	FALSE
chr16	10626630	T	C	0.00051	EMP2	-	FALSE	(T)n	SINE,Alu
chr1	26755209	A	G	0.00745	LIN28A	+	FALSE	AluSx1	SINE,Alu
chr6	44222157	G	A	0.00856	SLC35B2	-	FALSE
chr7	22983600	T	C	0.00025	FAM126A	-	FALSE
chr9	115447533	T	C	0.00326	INIP	-	TRUE	AluJb	SINE,Alu
chr1	40537941	A	C	0.00489	CAP1	+	FALSE	(A)n	SINE,Alu

RBP	PARP3
Knock-Method	CRISPR
RBP Family	PARP
Biosample Name	A549
Tissue Type	Lung
Biosample Type	Cell line
# of Control	3
# of Treat	3
Species	Human
Data Source	GEO
Profile ID	GSE94588
Platform	GPL18573
Pubmed ID	28447610

PARP3 - Target Gene Network