Dataset Overview
RBPPHAX
Knock-MethodsiRNA
RBP FamilyRNA_GG_bind
Biosample NameHela
Tissue TypeCervix
Biosample TypeCell line
# of Control3
# of Treat3
SpeciesHuman
Data SourceGEO
Profile IDGSE94427
PlatformGPL16791
Pubmed ID28297668

PHAX - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of PHAX
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of PHAX


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr125169634AG0.00531CLIC4+FALSE
chr11252221TC0.00728CPSF3L-TRUEAluSxSINE,Alu
chr811700737TC0.00126CTSB-TRUEAluSgSINE,Alu
chr1150479901CT0.00228TARS2+FALSEAluSc8SINE,Alu
chr2216300795CG0.00641.FALSE
chr1476680377TA0.00143.FALSEL1M5SINE,Alu
chr642856158AG0.00118RPL7L1+TRUEAluSzSINE,Alu
chr164935146CT0.00676PPL-FALSE
chr1179044206AG0.00458FAM20B+TRUEAluSxSINE,Alu
chr5175816759TA0.00018.FALSE
chr110520902AT0.00032DFFA-FALSE
chr5138705183TA9.01084E-05PAIP2,SLC23A1+,-FALSE
chr159124223GA0.00256MYSM1-FALSEMIR3SINE,Alu
chr12335348CT0.00018RER1+FALSE
chr286364710TC0.00273PTCD3+FALSE
chr1953997266AG0.00173ZNF813+FALSEL1M3SINE,Alu
chr154871874CT2.61533E-07SSBP3-FALSE
chr275887834TC0.00024MRPL19+FALSEL1MB4SINE,Alu
chr19163334TC0.00108.FALSEAluSpSINE,Alu
chr373025345AG0.00219.FALSEAluSzSINE,Alu
chr2236957822GA0.00929AGAP1+FALSE
chr439550084TC2.47241E-05UGDH-AS1,SMIM14+,-FALSEFLAM_CSINE,Alu
chr220818286AC0.00714HS1BP3-FALSE
chr233046027GC0.00397TTC27+FALSE
chr1154320942AG0.00579ATP8B2+FALSE
chr5175803244AG0.00245.FALSEAluSc8SINE,Alu
chr552388458AT0.00152ITGA2+FALSE
chr3195412715TC0.00837SDHAP2+FALSE
chr116957414CT0.00708.FALSE
chr11650787TC0.00426CDK11B,CDK11A-FALSE
chr119542401TC0.00010LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1757279253AG1.08987E-07PRR11+TRUEAluSq2SINE,Alu
chr237330540TC0.00854.FALSEAluSq2SINE,Alu
chr147746678GC0.00374STIL-FALSE
chr116450928TC0.00113EPHA2-FALSE
chr322424405TA0.00766.FALSE
chr143916642TC0.00748SZT2+FALSEMIR3SINE,Alu
chr348787011TC0.00040PRKAR2A-TRUEAluSx3SINE,Alu
chr119466935TG0.00439IPO7+FALSE
chr114150116CT7.82303E-05PRDM2+FALSE
chr128607959CA0.00230SESN2+FALSE
chr1167973198AG0.00061DCAF6+FALSE
chr1114306374GA0.00124RSBN1-FALSE
chr345960557CT1.72644E-06FYCO1-FALSE
chr41006333GA0.00117FGFRL1+FALSE(CTG)nSINE,Alu
chr1143464946TC0.00109.FALSE
chr117730CA0.00256WASH7P-FALSE
chr1118066459AG0.00496MAN1A2+FALSE
chr744917320TC0.00082PURB-TRUEAluSzSINE,Alu
chr1109818161CT0.00382CELSR2+FALSE
chr116912099GC0.00450NBPF1-FALSE
chr1758156064GA9.79781E-05HEATR6-FALSE
chr237331736TC0.00165.FALSEAluJbSINE,Alu
chr270131964AC0.00351SNRNP27+FALSEL1ME4aSINE,Alu
chr128835847AG0.00553SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr1120695202CA0.00033.FALSE
chr151434560GA0.00685CDKN2C+FALSE
chr1121115958TC0.00818SRGAP2-AS1,SRGAP2D,SRGAP2B,SRGAP2C+,-FALSE
chr11417649TG0.00274ATAD3B+FALSE
chr211323078CT0.00539ROCK2-FALSE
chr1457879959GA0.00144.FALSE
chr830536410TC3.13735E-05GSR-TRUEAluSpSINE,Alu
chr126611197CT0.00814UBXN11-FALSE
chr247398328GA0.00434CALM2-FALSE
chr1168213516AG0.00233.FALSEAluSx1SINE,Alu
chr3169808354GA0.00015PHC3-FALSE
chr16282259TC0.00072ICMT-TRUEAluSzSINE,Alu
chr111783295GA0.00977.FALSEMER58BSINE,Alu
chr1120163248GA0.00204ZNF697-FALSE
chr116893686GC0.00823NBPF1-FALSE
chr1213244381GA0.00345RPS6KC1+FALSE
chr110521254TC0.00023DFFA-TRUEAluYSINE,Alu
chr1145511998AG0.00715NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr1148252049AC0.00493NBPF8,NBPF14,NBPF9-FALSE
chr1205687358TC0.00432NUCKS1-FALSE(T)nSINE,Alu
chr136068210TC0.00178PSMB2-TRUEAluScSINE,Alu
chr1117530273AG0.00601PTGFRN+FALSE
chr2113513825TC2.13681E-05CKAP2L-FALSE
chr1108728562AT0.00228SLC25A24-FALSE
chr110221287AG0.00961UBE4B+FALSE
chr812286573GA0.00052FAM86B2-FALSE
chr67610036CA0.00545SNRNP48+FALSEL1ME1SINE,Alu
chr1748771488CA0.00148ANKRD40-FALSEAluSzSINE,Alu
chr8117784431TA0.00422UTP23+FALSEAluSz6SINE,Alu
chr116909208CG0.00482NBPF1-FALSE
chr111347150CA0.00380UBIAD1+FALSE
chr16283264TC0.00287ICMT-TRUEAluSx3SINE,Alu
chr125663918GA0.00951RSRP1-FALSE
chr3186505900TG1.87786E-07EIF4A2+FALSE
chr553841240AG0.00416SNX18+FALSE
chr11419823AG0.00816ATAD3B+TRUEAluYk2SINE,Alu
chr187573327TC0.00571HS2ST1+FALSE(AT)nSINE,Alu
chr1963633CT0.00999WASH5P-FALSEMLT1KSINE,Alu
chr2206987731TC0.00731.FALSEAluJbSINE,Alu
chr3195965115AT0.00098PCYT1A-FALSE
chr1233021934AG0.00035PKP2-FALSE
chr642856905AG4.80826E-12RPL7L1+TRUEAluSpSINE,Alu
chr6134492481AC0.00340SGK1-FALSE
chr342592874TC9.28376E-05SEC22C-FALSEAluJrSINE,Alu
chr1114940209GT0.00177TRIM33-FALSE(T)nSINE,Alu
chr1201438098TG2.75480E-05PHLDA3-FALSE
chr1145499276CT0.00581NBPF20,NBPF10,LIX1L+FALSE
chr116889639TC0.00524NBPF1-TRUE
chr177759578AG0.00031AK5+FALSE
chr1145281543CT0.00999NBPF20,NOTCH2NL+FALSE
chrX73421652TC0.00436FTX-TRUEL1MB7SINE,Alu
chr19329105TA0.00233H6PD+FALSE
chr131732602CA0.00336SNRNP40-FALSE
chr1109475629AG0.00305GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr165897981GA0.00025LEPR,LEPROT+FALSE
chr16583538TC0.00455NOL9-TRUEAluSqSINE,Alu
chr1184761365AG0.00758FAM129A-FALSEAluJoSINE,Alu
chr5139931627CT0.00073SRA1-FALSE
chr145976723TC5.68535E-05MMACHC,PRDX1+,-FALSE
chr110517306TC0.00176.FALSEAluJrSINE,Alu
chr1109181317CG0.00597FAM102B+FALSE
chr1911945688AG0.00083ZNF440+TRUEAluSpSINE,Alu
chr1111991845CA0.00803WDR77,ATP5F1+,-FALSE
chr1205057482AT0.00907RBBP5-FALSE
chr1150704418TC0.00420CTSS-TRUEAluJoSINE,Alu
chr132373837GT0.00681PTP4A2-FALSE(T)nSINE,Alu
chr1113212974AT0.00424CAPZA1+FALSE
chrX77084017TC0.00179MAGT1-TRUEAluSzSINE,Alu
chr1145512081AG0.00579NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr3123368013AG0.00812MYLK-FALSE
chr12303094TC0.00113MORN1-TRUEAluSpSINE,Alu
chr124862649AG0.00074RCAN3+FALSE
chr194351062TA0.00189GCLM-FALSE
chr16282426TC0.00513ICMT-TRUEAluSzSINE,Alu
chr1923542193TC0.00099ZNF91-TRUEAluYSINE,Alu
chr1765335316TC0.00296PSMD12-TRUEAluSxSINE,Alu
chr171683647TC0.00763SMYD4-TRUEAluJbSINE,Alu
chr1114940211GT0.00925TRIM33-FALSE(T)nSINE,Alu
chr2242615532CA0.00603DTYMK-FALSE
chr1220231347TC0.00963RNU5F-1,BPNT1+,-FALSEAluYSINE,Alu
chr12133333936CT0.00726ANKLE2-FALSEMER58ASINE,Alu
chr5133918134GT0.00404JADE2+FALSE
chr19163402TC0.00014.FALSEAluSpSINE,Alu
chr237331560TC6.28398E-05.FALSEAluJbSINE,Alu
chr345722396AG0.00231LIMD1,LIMD1-AS1+,-FALSEAluSzSINE,Alu
chr125570692CT0.00095RSRP1-FALSE
chr125169634AG0.00843CLIC4+FALSE
chr110521130TC0.00860DFFA-TRUEAluYSINE,Alu
chr330735330GT0.00401TGFBR2+FALSE
chr1184761312TC0.00308FAM129A-TRUEAluJoSINE,Alu
chr1179042300CA0.00491FAM20B+FALSE
chr933466219AC0.00148NOL6-FALSE
chr1542503333TC0.00120TMEM87A-FALSE(T)nSINE,Alu
chr4128756737AG8.66859E-06.FALSEAluSxSINE,Alu
chr1145688956AG0.00155NBPF20,NBPF10,RNF115+TRUEAluSc8SINE,Alu
chr110520058TC0.00907.FALSEAluSxSINE,Alu
chr791742141TC0.00100CYP51A1-FALSEAluSx3SINE,Alu
chr153288894AG0.00066ZYG11B+TRUEAluJoSINE,Alu
chr128825415AG1.13446E-06PHACTR4+TRUEAluSgSINE,Alu
chr110518797TC0.00421.FALSEAluSx1SINE,Alu
chr12336210CT0.00175RER1+FALSE
chr1156495521CA0.00097IQGAP3-FALSE
chr152306079TA0.00708NRDC-FALSE(TCA)nSINE,Alu
chr1160967856TC0.00491F11R-TRUEAluSpSINE,Alu
chr3193334991GA0.00473OPA1+FALSE
chr128825781AG0.00166PHACTR4+TRUEAluSpSINE,Alu
chr1298942904AG0.00259TMPO+TRUEAluScSINE,Alu
chr1241792562AG0.00800OPN3,CHML-FALSE
chr285772408GA0.00278GGCX-FALSE
chr224227417AG0.00514.FALSEAluScSINE,Alu
chr348556339GA6.87729E-06PFKFB4-FALSE
chr212858202CT0.00873TRIB2+FALSE
chr1145512024AG0.00084NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr237331207TC0.00745.FALSEAluSx1SINE,Alu
chr11234095CA0.00039ACAP3-FALSE
chr1227574427AG7.32829E-06ARNTL2,ARNTL2-AS1+,-FALSEAluSzSINE,Alu
chr155207986TA0.00872MROH7-TTC4,TTC4+FALSE
chr5137891109CG0.00031HSPA9-FALSE
chr1114515717GA0.00018HIPK1+FALSE
chr3195461650AG0.00062.FALSEAluSzSINE,Alu
chr2206983298TC0.00811.FALSEAluJbSINE,Alu
chr116889985TC0.00778NBPF1-FALSE
chr1145688664AT0.00013NBPF20,NBPF10,RNF115+FALSE
chr5149823794GT0.00204RPS14-FALSE
chr237327662TC9.50751E-10.FALSE
chr126158907AG0.00061MTFR1L,AUNIP+,-FALSE
chr147746678GC0.00328STIL-FALSE
chr1942376872AG0.00647.FALSEAluSpSINE,Alu
chr1742876398TC0.00697GJC1-FALSEAluSz6SINE,Alu
chr1169768080CA0.00980C1orf112+FALSE
chr1182358196CG0.00929GLUL-FALSE
chr1144912233CT0.00066NBPF20,PDE4DIP+,-FALSE
chr11361641CT0.00928TMEM88B+FALSE
chr1146643580GA0.00113PRKAB2-FALSE
chr194351065AT0.00142GCLM-FALSE
chr1918306990GC0.00090MPV17L2+FALSE
chr1075009781TC9.15447E-06DNAJC9-AS1,MRPS16+,-FALSEAluYSINE,Alu
chr194351064AT0.00212GCLM-FALSE
chr299208209GA0.00609.FALSE
chr1109818159GT0.00036CELSR2+FALSE
chr1116234313AG0.00016VANGL1+FALSE
chr1738798073TG0.00692SMARCE1-FALSE
chr153288897AG0.00439ZYG11B+TRUEAluJoSINE,Alu
chr848890114AG2.61683E-11MCM4+TRUEAluJbSINE,Alu
chr153289940AG0.00245ZYG11B+TRUEFRAMSINE,Alu
chr417629937GA0.00795.FALSEMER90SINE,Alu
chr425236017TC2.76644E-09PI4K2B+FALSE
chr1146650542AG0.00017PDIA3P1+FALSE
chr120826781CT1.74444E-05MUL1-FALSE
chr190478690AC0.00035ZNF326+FALSE
chr310192596AG9.40892E-06VHL+TRUEAluSx1SINE,Alu
chr1148558170TC0.00235.FALSEAluJbSINE,Alu
chr155207983TA0.00018MROH7-TTC4,TTC4+FALSE
chr7102089261AG0.00028ORAI2+TRUEAluSq2SINE,Alu
chrX123046892AG0.00064XIAP+TRUEAluSxSINE,Alu
chr119771768AG0.00891SWAP70+TRUEAluSx1SINE,Alu
chr11344998AG5.29904E-05.FALSEAluSgSINE,Alu
chr146075661AG0.00071NASP+TRUEAluSx4SINE,Alu
chr1474526154TC0.00030BBOF1,ALDH6A1+,-FALSEAluSpSINE,Alu
chr1114455907GA0.00705DCLRE1B+FALSE
chrX118672641TC0.00027CXorf56-TRUEAluSxSINE,Alu
chr118808465TA0.00957KLHDC7A+FALSE
chr237331201TC0.00291.FALSEAluSx1SINE,Alu
chr116952481AG0.00093CROCCP2-FALSE
chr2167168093CT0.00789SCN9A-FALSE
chr42940085TC0.00801NOP14-AS1,NOP14+,-FALSEAluSpSINE,Alu
chr2238484068TC0.00047RAB17-FALSE
chr766007124TC0.00158GS1-124K5.11-TRUEAluJoSINE,Alu
chr11650832AG0.00407CDK11B,CDK11A-FALSE
chr2172178588TC0.00369METTL8-TRUEAluSx3SINE,Alu
chr1075009591TC8.39163E-08DNAJC9-AS1,MRPS16+,-FALSEAluScSINE,Alu
chr131905887AC4.57629E-05SERINC2+FALSE
chr345960556CT0.00500FYCO1-FALSE
chr1146650091CA0.00361PDIA3P1+FALSE
chr1167759281TC0.00923MPZL1+FALSE
chr193828523TA0.00155.FALSE
chr1145500925TA0.00997NBPF20,NBPF10,LIX1L+FALSE
chr3156259299TC0.00097SSR3-TRUEAluSq2SINE,Alu
chr357612271TC0.00831DENND6A,PDE12+,-FALSEAluSpSINE,Alu
chr128835937AG2.00244E-07SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr744841237TA0.00599PPIA+FALSE
chr11255412CA0.00751CPSF3L-FALSE(GCAGG)nSINE,Alu
chr1150937963AG0.00658CERS2-FALSEG-richSINE,Alu
chr5180682608CA0.00144CTC-338M12.4+FALSE
chr725161424TC0.00669CYCS-TRUEAluSz6SINE,Alu
chr1167765170GT0.00185UNC93B1-FALSE
chr5176883676AT0.00456DBN1-FALSE(A)nSINE,Alu
chr457326875AG0.00456PAICS+TRUEAluSx1SINE,Alu
chr110521238TC0.00797DFFA-TRUEAluYSINE,Alu
chr178414329GA0.00303FUBP1-FALSEA-richSINE,Alu
chr1131452788AG0.00239DNAJC24+TRUEAluSx1SINE,Alu
chr117299387TA0.00941CROCC+FALSE
chr1145689533AG0.00051NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr560050122AT0.00272ELOVL7-FALSE
chr110520669TC0.00963DFFA-FALSEAluSc8SINE,Alu
chr350150360AG0.00827RBM5+TRUEAluSxSINE,Alu
chr126799971TA0.00713HMGN2+FALSE
chr2220308581AC0.00029SPEG+FALSE
chr2157440644GC0.00394GPD2+FALSE
chr1180991776CA0.00664STX6-FALSE
chr1298943103AG0.00528TMPO+TRUEAluSzSINE,Alu
chr124151858CT0.00104HMGCL-FALSE
chr1149581866CG0.00774LINC00623,LINC00869,LOC103091866+FALSEL2bSINE,Alu
chr1256510698CG0.00019RPL41+FALSE
chr19163319TC0.00936.FALSEAluSpSINE,Alu
chr1469704553GT7.62587E-05EXD2+FALSE
chr261277384AG0.00339PEX13+TRUEAluSxSINE,Alu
chr1164084160CT0.00895ESRRA,TRMT112+,-FALSE
chr1145284132GA0.00338NBPF20,NOTCH2NL+FALSE(TG)nSINE,Alu
chr613790931TC0.00948MCUR1-TRUEAluSx1SINE,Alu
chr6108363821TC0.00769OSTM1-TRUEAluJbSINE,Alu
chr825222165AG0.00019DOCK5+FALSE
chr4169911126CA0.00122CBR4-FALSE
chr310168785TC0.00198BRK1+FALSE
chr1773703945CT0.00242SAP30BP+FALSEMIRcSINE,Alu
chr224223353AG0.00083UBXN2A+TRUEAluScSINE,Alu
chr1145689492AG0.00075NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr133149408AG0.00624SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr2203741602TC0.00581.FALSEAluJrSINE,Alu
chr830535980TC0.00038GSR-TRUEAluJrSINE,Alu
chr1226333556CA0.00250ACBD3-FALSE(CAAAA)nSINE,Alu
chr4128758175AG0.00385.FALSEAluSxSINE,Alu
chr344791547TC0.00184KIAA1143-TRUEAluJrSINE,Alu
chr1144596446AG0.00124NBPF20+TRUEAluJbSINE,Alu
chr1220231370TC0.00826RNU5F-1,BPNT1+,-FALSEAluYSINE,Alu
chr643582750AG0.00844POLH+TRUEAluSx1SINE,Alu
chr3126755134CT0.00920PLXNA1+FALSE
chr1681064656AG0.00120CENPN+TRUEAluSgSINE,Alu
chr1225683161TG0.00168ENAH-FALSE(T)nSINE,Alu

Differential Expression Gene Analysis