Dataset Overview
RBPPUS7
Knock-MethodsiRNA
RBP FamilyTruD
Biosample NameHEK293
Tissue TypeKidney
Biosample TypeCell line
# of Control2
# of Treat3
SpeciesHuman
Data SourceGEO
Profile IDGSE90851
PlatformGPL16791
Pubmed IDN.A.

PUS7 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of PUS7
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of PUS7


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr1183876182CT0.00494RGL1+FALSE
chr1569874CT0.00072.FALSE
chr199672436TC3.01645E-08.FALSEAluJrSINE,Alu
chr110520076TC0.00075.FALSEAluSxSINE,Alu
chr1114940230TG0.00413TRIM33-FALSE(T)nSINE,Alu
chr6116600774CG0.00180DSE,TSPYL1+,-FALSE
chr1687440117CT1.93168E-06ZCCHC14-FALSE
chr617557412CT0.00986CAP2+FALSE
chr1615023271GA0.00403.FALSE
chr2206986245TC0.00304.FALSEAluSzSINE,Alu
chr110518052TC7.90759E-05.FALSEAluJrSINE,Alu
chr579276281AG0.00026MTX3-FALSE
chr417804847TC0.00512DCAF16-TRUEAluSxSINE,Alu
chr132687473TG0.00892TMEM234,EIF3I+,-FALSE
chr729960812TA1.34773E-06SCRN1-FALSE
chr1958420152CA0.00322ZNF417-FALSE
chr76063466TA0.00153EIF2AK1-FALSE
chr1320224387AG0.00959MPHOSPH8+FALSE
chr1120164545TG0.00058ZNF697-FALSE
chr1298943103AG0.00306TMPO+TRUEAluSzSINE,Alu
chr274442431TG0.00375.FALSE
chr11124954212CA0.00827SLC37A2+FALSE
chr261278017AG8.96590E-05PEX13+TRUEAluYSINE,Alu
chr153291425AG2.55913E-05ZYG11B+TRUEAluJrSINE,Alu
chr11345051AG0.00816.FALSEAluSgSINE,Alu
chr4165998654TC0.00564TMEM192-TRUEAluSgSINE,Alu
chr12133298937AG0.00240PGAM5+TRUEAluSgSINE,Alu
chr151822219GA0.00223EPS15-FALSE
chr274090062TG0.00248STAMBP+FALSE
chr153292607TA2.07283E-05ZYG11B+FALSE
chr9116139063GC0.00321HDHD3-FALSE
chr291805833AG1.63980E-13.FALSEMLT1H1SINE,Alu
chr1244571947CT0.00775ADSS-FALSE
chr119543364TC0.00447LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1109535116GA0.00013WDR47-FALSE
chr1111682307GC5.71833E-05DRAM2,CEPT1+,-FALSE
chr12133298355AG0.00024PGAM5+TRUEAluSpSINE,Alu
chr132742441GA2.83845E-11LCK+FALSE
chr153684924AG0.00913C1orf123-FALSEL1MA5ASINE,Alu
chr5177576461AT0.00659.FALSE
chr298388811CG0.00123TMEM131-FALSE
chr1205501469AG0.00113CDK18+FALSE
chr1146650289CT0.00967PDIA3P1+FALSE
chr1280014907AT0.00737PAWR-FALSE
chr1153587256AT0.00013S100A14-FALSE
chr1145282799GA0.00915NBPF20,NOTCH2NL+FALSE
chr455147769CT0.00079PDGFRA+FALSE
chr5132203384TA0.00651UQCRQ+FALSE
chr410076860GA1.69987E-09WDR1-FALSE
chr2170488325AG0.00698PPIG+FALSE
chr116958064AG0.00240.FALSE
chr1154128836AT0.00090TPM3-FALSE
chr1154554940GC0.00032ADAR-FALSE
chr116893686GC0.00296NBPF1-FALSE
chr11252654AG0.00125CPSF3L-FALSEAluSpSINE,Alu
chr1179043553GA0.00238FAM20B+FALSE
chr117393260TC0.00094PADI2-FALSE
chr16283264TC0.00378ICMT-TRUEAluSx3SINE,Alu
chr1143467373TC0.00182.FALSE
chr1168218671AG0.00974.FALSEAluSzSINE,Alu
chr115991645TC0.00361.FALSEAluSpSINE,Alu
chr9125609940TA0.00044.FALSE
chr237331525TC0.00020.FALSEAluJbSINE,Alu
chr310192642AG0.00217VHL+TRUEAluSx1SINE,Alu
chr541917696TA0.00045C5orf51+FALSE
chr1145513114AG0.00033NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr110521238TC0.00173DFFA-TRUEAluYSINE,Alu
chr339450156AG0.00985RPSA+FALSE
chr140974799TC0.00038EXO5+FALSE
chr5175816759TA0.00018.FALSE
chr146827871GA0.00014NSUN4+FALSE
chr1591044381CA0.00440IQGAP1+FALSE
chr626411987TC0.00405BTN3A1+FALSE
chr2120022385CT0.00184STEAP3+FALSE
chr126802457CA0.00962HMGN2+FALSE
chr19161550GA0.00196.FALSE
chr11255401GT0.00216CPSF3L-FALSE(GCAGG)nSINE,Alu
chr6109786003TC0.00245MICAL1,ZBTB24-TRUEAluJrSINE,Alu
chr117248500AG0.00866CROCC+FALSE
chr154493197TC0.00489TMEM59-TRUEAluSz6SINE,Alu
chr1145291217CT0.00075NBPF20+FALSE
chr23592602TC0.00232RNASEH1-TRUEAluSz6SINE,Alu
chr138174987TC0.00350CDCA8+FALSE
chr729962665CT0.00059SCRN1-FALSE
chr812879707TG0.00780KIAA1456+FALSE
chr1205583612CA0.00311ELK4-FALSE
chr239009355AG0.00079.FALSEAluSx3SINE,Alu
chr237331207TC0.00745.FALSEAluSx1SINE,Alu
chr132638906CT4.63739E-10KPNA6+FALSE
chr1109746825AG0.00094KIAA1324+TRUEAluJbSINE,Alu
chr9137332311TG0.00036RXRA+FALSE
chr2172412008CG0.00982CYBRD1+FALSE
chr596503523CT0.00072RIOK2-FALSE
chr285548076AT0.00682TGOLN2-FALSE
chr139908506GA0.00079MACF1+FALSE
chr11656557TC0.00012SLC35E2-TRUEAluSzSINE,Alu
chr237330611TC0.00249.FALSEAluSq2SINE,Alu
chr1566641732GC0.00106TIPIN-FALSE
chr167874859TC0.00209SERBP1-TRUEAluSxSINE,Alu
chr2224621887TC0.00373AP1S3-FALSEAluScSINE,Alu
chr1016554732TA0.00706PTER+FALSE
chr316301791GA4.37274E-05DPH3-FALSE
chr363996262CT0.00273PSMD6-AS2,PSMD6+,-FALSE
chr823049112TC0.00774TNFRSF10A-TRUE
chr5134260212CT0.00264PCBD2+FALSE
chr1226923938AC0.00160ITPKB-FALSE
chr263817855CG0.00096MDH1+FALSE
chr1120539711GT0.00627NOTCH2-FALSE
chr128835847AG5.60567E-05SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr5149823799AT0.00672RPS14-FALSE
chr153292607TA0.00680ZYG11B+FALSE
chr189525966TC0.00039GBP1-FALSE
chr320025661CT4.83976E-05RAB5A,PP2D1+,-FALSE
chr561683960AG0.00491.FALSE
chr1118166096CT0.00861FAM46C+FALSE
chr1144595943AG0.00050NBPF20+FALSEAluJbSINE,Alu
chr4177251328CT9.41230E-05SPCS3+FALSE
chrX123047170AG0.00855XIAP+FALSEAluSxSINE,Alu
chr167874270GA0.00019SERBP1-FALSE
chr153288916AG0.00289ZYG11B+TRUEAluJoSINE,Alu
chr1154987526CT0.00043ZBTB7B+FALSE
chr1204521631AG0.00024MDM4+TRUEAluSgSINE,Alu
chr3122283291CA0.00061DTX3L,PARP9+,-FALSE
chr1959095469AG5.44182E-05CENPBD1P1+TRUEAluJbSINE,Alu
chr12133297966AG0.00000PGAM5+FALSEAluJoSINE,Alu
chr347386061AC8.10198E-06KLHL18+FALSE
chr4843695AG0.00602GAK-FALSE
chr344692564CG0.00182ZNF35+FALSE
chr4120979190TC0.00970.FALSEAluSg4SINE,Alu
chr1120162442TC0.00065ZNF697-FALSE
chr63021492AG0.00613HTATSF1P2-FALSETigger3aSINE,Alu
chr1528502279AG0.00120HERC2-FALSE
chr132697085TC0.00366EIF3I+FALSEAluSpSINE,Alu
chr126143727AT0.00602SEPN1+FALSEAluSxSINE,Alu
chr7137561077CA0.00995CREB3L2-FALSE
chr120976078TC0.00064PINK1,PINK1-AS+,-FALSEAluSzSINE,Alu
chr5139680027AG0.00155PFDN1-FALSE
chr128859264TG0.00030RCC1+FALSE
chr1145285310CA5.09397E-05NBPF20,NOTCH2NL+FALSE
chr624720271TG0.00839.FALSE
chr187328433TC3.09926E-06SEP15-FALSE
chr315296358AT4.17447E-06SH3BP5,SH3BP5-AS1+,-FALSE
chr1120166681GA0.00879ZNF697-FALSE
chr261416403TG0.00350USP34-FALSEAluSc8SINE,Alu
chr141088377CT2.57179E-08RIMS3-FALSE
chr468484330GA0.00131UBA6-FALSE
chr413583889TC2.08207E-10BOD1L1-FALSE
chr642857542TA0.00029RPL7L1+FALSEMIRcSINE,Alu
chr16583457TC0.00075NOL9-TRUEAluSqSINE,Alu
chr1211921702TC1.94235E-05LPGAT1-FALSE
chr5138705183TA9.01084E-05PAIP2,SLC23A1+,-FALSE
chr126755643AG0.00428LIN28A+FALSEAluScSINE,Alu
chr261278030AG0.00218PEX13+TRUEAluYSINE,Alu
chr1204520455TC0.00478MDM4+FALSEAluJbSINE,Alu
chr1953155674TC1.27993E-05ZNF83-TRUEAluSgSINE,Alu
chr3160219829CT0.00654KPNA4-FALSE(TA)nSINE,Alu
chr330735330GT0.00402TGFBR2+FALSE
chr269688897TC0.00888AAK1-TRUEAluSq2SINE,Alu
chr285772406GA0.00278GGCX-FALSE
chr5118174757TC0.00032DTWD2-TRUEAluYSINE,Alu
chr6150047370TC0.00084NUP43-TRUEAluScSINE,Alu
chr13654747CA0.00691TP73-AS1-FALSE
chr1116943511TC0.00236ATP1A1,ATP1A1-AS1+,-FALSE
chr174672474GA0.00292FPGT-TNNI3K,FPGT+FALSEX12_DNASINE,Alu
chr5148873854AG0.00453.FALSE
chr1143189486AG0.00122LOC102723769-FALSE
chr521883662TG0.00108CDH12-FALSE
chr116889044TA0.00256NBPF1-FALSE
chr674134781TC0.00789.FALSEAluSzSINE,Alu
chr145280500AG0.00857.FALSEAluSxSINE,Alu
chr152520866CT0.00108TXNDC12-FALSE
chr133148696AG0.00363SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr1145688663TG0.00081NBPF20,NBPF10,RNF115+FALSE
chr1118552269TA0.00066.FALSEAluJrSINE,Alu
chr340578935AG0.00063ZNF621+TRUEAluJrSINE,Alu
chr2238673923CA0.00813LRRFIP1+FALSE(CA)nSINE,Alu
chr2170495929TA0.00625.FALSE
chr126601329CT3.97278E-05MRPL51-FALSE
chr11118880839AG0.00922CCDC84+TRUEAluJbSINE,Alu
chr1146649884TA0.00612PDIA3P1+FALSE
chr1215035081TC0.00951MGP-FALSE
chr299812311AG0.00016MRPL30+TRUEAluSxSINE,Alu
chr7127947979TC0.00257.FALSEAluJrSINE,Alu
chr59549459AG0.00783SNHG18+FALSE
chr228636644AG0.00269FOSL2+FALSE
chr119542310TC0.00112LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr133148623AG0.00221SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr225962253AT0.00784ASXL2-FALSE
chr192976590GA0.00629EVI5-FALSE
chr314986110TC0.00691FGD5-AS1-TRUEFLAM_CSINE,Alu
chr1145313405CT0.00322NBPF20,NBPF10+FALSE
chr1530781885CT0.00380.FALSE
chr11650797AG0.00325CDK11B,CDK11A-FALSE
chr128825337AG0.00904PHACTR4+TRUEAluSgSINE,Alu
chr42940026TC0.00046NOP14-AS1,NOP14+,-FALSEAluSpSINE,Alu
chr1156565056CT0.00498GPATCH4-FALSE
chr1564657530TC0.00580KIAA0101-TRUEFLAM_CSINE,Alu
chr1120611964GC0.00211NOTCH2-FALSE
chr5130540368AC0.00420LYRM7+FALSETigger4aSINE,Alu
chr16695423TG9.25675E-05THAP3,DNAJC11+,-FALSE
chr1532820880CG0.00672WHAMMP1-FALSE
chr3150262004AT0.00167SERP1-FALSE
chr4190883001CG0.00319FRG1+FALSE
chr2238244963AG0.00124COL6A3-FALSE
chr116889502TC0.00468NBPF1-TRUEL1MC4SINE,Alu
chr2118940466AT0.00169CXADR+FALSEAluYSINE,Alu
chr110517508TC0.00034.FALSEAluSx1SINE,Alu
chr2171849612TC0.00364TLK1-FALSE
chr350327662GA0.00707IFRD2-FALSE
chr11234671GA0.00100ACAP3-FALSE
chr123636031TA0.00965HNRNPR-FALSE
chr1116609833GA0.00012SLC22A15+FALSE
chr697592900CA0.00076MMS22L-FALSE
chr116912029CG0.00831NBPF1-FALSE
chr13806074GA0.00809C1orf174-FALSEAluSpSINE,Alu
chr352028445CT0.00934RPL29-FALSE
chr19160982TC0.00304.FALSEAluJbSINE,Alu
chr3195963398AG0.00271.FALSE
chr191486838GC0.00370ZNF644-FALSE
chr128661665AG0.00808MED18+TRUEAluSgSINE,Alu
chr14105676287CT0.00036BRF1-FALSE
chr3149036714GA0.00972TM4SF18-FALSE
chr11549354GA0.00383.FALSEHAL1SINE,Alu
chr2217366194CA0.00359.FALSE
chr1629707549AG0.00025QPRT+TRUEAluJrSINE,Alu
chr285772408GA0.00278GGCX-FALSE
chr2206985727CT0.00786.FALSEMIRcSINE,Alu
chr119199221CT0.00095ALDH4A1-FALSE
chr11251841TC0.00222CPSF3L-TRUEAluSq2SINE,Alu
chr2233257373GA0.00581SYN3,TIMP3+,-FALSE
chr2203744658TC0.00112.FALSEAluSx1SINE,Alu
chr5125962175AG0.00020PHAX+TRUEAluScSINE,Alu
chr5150827307GT0.00708SLC36A1+FALSE
chr2206987228TC0.00052.FALSEAluSxSINE,Alu
chr344839350AC0.00837KIF15+FALSE
chr1941097276CG0.00188SHKBP1+FALSE
chr315114759GA1.99109E-05RBSN-FALSE
chr3141879765TC0.00212GK5-TRUEAluJrSINE,Alu
chr110519888TC0.00666.FALSEAluJrSINE,Alu
chr791742141TC0.00100CYP51A1-FALSEAluSx3SINE,Alu
chr5180663941GT0.00166RACK1-FALSE
chr237330476TC2.74271E-05.FALSEAluSq2SINE,Alu
chr3179117663GC6.59793E-05GNB4-FALSE
chr399516879AT7.79377E-13MIR548G-FALSE
chr116929056CT0.00398NBPF1-FALSE
chr154691910AG0.00481SSBP3-FALSE
chr1156044222GT0.00037MEX3A-FALSE(T)nSINE,Alu
chr261277798AG0.00077PEX13+TRUEAluYSINE,Alu
chr2046284868AT0.00681NCOA3+FALSE
chr928607TC0.00146WASH1-FALSE
chr131532312CT0.00215PUM1-FALSE
chr1327407AG3.55459E-07.FALSE
chr1168218543AG0.00547.FALSEAluSzSINE,Alu
chr5108714298TC0.00967PJA2-FALSE
chr1145511962AG0.00091NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr255516891GA2.12747E-05CCDC88A-FALSE(GA)nSINE,Alu
chr128564252AG0.00986ATPIF1+FALSE
chr146828653TA0.00920NSUN4+FALSE
chr116894497CT0.00454NBPF1-FALSE
chr1214524633TA0.00017PTPN14-FALSEAluSINE,Alu
chr1745219755GT0.00592CDC27-FALSE
chr224223265AG0.00417UBXN2A+TRUEAluScSINE,Alu
chr19329105TA0.00233H6PD+FALSE
chr111979807CA0.00574KIAA2013-FALSE
chr642856954AG0.00037RPL7L1+TRUEAluSpSINE,Alu
chr1161338504CG0.00343.FALSE
chr119542250TC0.00015LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1228880098TA4.07865E-05RHOU+FALSE
chr1117530273AG0.00270PTGFRN+FALSE
chr1623478710CA0.00335GGA2-FALSE(AC)nSINE,Alu
chr339449137TC0.00000RPSA+FALSE
chr1746803538CT0.00492HOXB13-FALSE
chr352567617AG0.00025NT5DC2-FALSEG-richSINE,Alu
chr1205687213TA0.00950NUCKS1-FALSE
chr791742141TA0.00620CYP51A1-FALSEAluSx3SINE,Alu
chr12102517753TC0.00022PARPBP+FALSE
chr2133104541AG0.00109.FALSE
chr133148736AG0.00525SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr1234561498TC2.33971E-05TARBP1-FALSE
chr3183533964TC2.38465E-05MAP6D1-FALSE
chr2101010038GA0.00339CHST10-FALSE
chr9133579734AG0.00129EXOSC2+TRUEAluSx3SINE,Alu
chr1060047608AG0.00356CISD1+FALSE(A)nSINE,Alu
chr1474431191AG0.00670ENTPD5-FALSE
chr2196999051CG0.00403STK17B-FALSEMER1BSINE,Alu
chr11650787TC0.00071CDK11B,CDK11A-FALSE
chr1138266CT7.30419E-05LOC729737-FALSE
chr140722795GA9.35494E-07.FALSECharlie2aSINE,Alu
chr210933249CT0.00889PDIA6-FALSE
chr315113842TC0.00100RBSN-TRUEAluSz6SINE,Alu
chr4165999188TC0.00751TMEM192-TRUEFLAM_CSINE,Alu
chr457801150AT0.00462REST+FALSE
chr19162932AT0.00635.FALSE
chr1114306369AT0.00352RSBN1-FALSE
chr1542503335TC0.00023TMEM87A-FALSE(T)nSINE,Alu
chr153289686AG0.00222ZYG11B+TRUEAluSzSINE,Alu
chr76505901TC1.53488E-09KDELR2-FALSE
chr11653046TA0.00986CDK11B,CDK11A-FALSE
chr237329307TC0.00137.FALSEAluJr4SINE,Alu
chr286731651GA0.00378CHMP3,RNF103-CHMP3-FALSE
chr5140751128CG0.00647PCDHGA1,PCDHGA2,PCDHGA3,PCDHGB1,PCDHGA4,PCDHGB2,PCDHGA5,PCDHGB3+FALSE
chr1157963369CG0.00667KIRREL+FALSE
chr8128944712AC0.00033PVT1+FALSE
chr165901227AT0.00914LEPR,LEPROT+FALSEAluYh3SINE,Alu
chr733060946AG0.00542NT5C3A-FALSE
chr41387223AG0.00155CRIPAK+TRUEAluSxSINE,Alu
chr1465400786TG0.00077CHURC1-FNTB,CHURC1+FALSEAluSxSINE,Alu
chr127107650TA3.71504E-05ARID1A+FALSE
chr5118174855TC1.06010E-07DTWD2-TRUEAluYSINE,Alu
chr127202789TC0.00026.FALSEAluSq2SINE,Alu
chr1610624997TC1.19407E-05EMP2-TRUEAluSx3SINE,Alu
chr1213037745CG0.00015FLVCR1+FALSE
chr165897981GA0.00025LEPR,LEPROT+FALSE
chr719736460AG6.53378E-05TWISTNB-FALSEMER33SINE,Alu
chr2201749994TC0.00496PPIL3-TRUEAluSxSINE,Alu
chr5110463616GT0.00264WDR36+FALSE(T)nSINE,Alu
chr5125962344AG0.00101PHAX+TRUEAluScSINE,Alu
chr19330740GC0.00077H6PD+FALSE
chr1109801121CT0.00115CELSR2+FALSE
chr2238499528TG0.00332RAB17-FALSE
chr5125961534AG0.00233PHAX+TRUEAluSz6SINE,Alu
chr133148362AT0.00870SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr116973198GA0.00514MST1P2+FALSE
chr128826114AG0.00264PHACTR4+TRUEAluJbSINE,Alu
chr164114301TC0.00955PGM1+FALSE
chr227887286GA0.00404SLC4A1AP+FALSE
chr1168523337TC0.00016CPT1A-TRUEAluSqSINE,Alu
chr1204526713AG0.00078MDM4+TRUEAluSxSINE,Alu
chr1203766875TC3.09664E-07ZC3H11A,ZBED6+FALSE
chr145244411CA0.00149RPS8+FALSE
chr2206986978TC0.00159.FALSEAluJrSINE,Alu
chr110517300TC0.00113.FALSEAluJrSINE,Alu
chr11595540TC0.00830CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr47761286TC8.48634E-10AFAP1,AFAP1-AS1+,-FALSE
chr1109475629AG0.00744GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr1590627429TC0.00013IDH2-FALSE
chr19161142TC0.00160.FALSEAluSxSINE,Alu
chr2181737842CT0.00350SCHLAP1+FALSE
chr271298486TC0.00408NAGK+FALSE
chr399463810GT0.00496MIR548G,COL8A1+,-FALSE

Differential Expression Gene Analysis