RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	143638998	G	A	0.00496	KYNU	+	FALSE
chr4	17488244	G	A	0.00030	QDPR	-	FALSE
chr7	17384440	A	G	0.00271	AHR	+	TRUE	AluSx	SINE,Alu
chr5	115166486	T	C	0.00122	ATG12	-	TRUE	AluJr	SINE,Alu
chr7	100031495	C	T	0.00475	MEPCE	+	FALSE
chr3	88104168	C	T	0.00919	CGGBP1	-	FALSE
chr1	16576290	G	A	0.00104	FBXO42	-	FALSE	A-rich	SINE,Alu
chr3	63996262	C	T	0.00273	PSMD6-AS2,PSMD6	+,-	FALSE
chr1	13942884	A	C	0.00016	PDPN	+	FALSE
chr1	28566461	T	C	1.61071E-05		.	FALSE	AluSx1	SINE,Alu
chr1	145512925	A	G	0.00230	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr5	94050487	T	A	0.00380	MCTP1	-	FALSE
chr1	114443582	A	G	0.00137	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr17	5288083	T	A	0.00232	RABEP1	+	FALSE
chr1	15896199	G	A	0.00483	DNAJC16	+	FALSE	AluSp	SINE,Alu
chr2	120022387	C	T	0.00728	STEAP3	+	FALSE
chr1	9416568	C	T	0.00061	SPSB1	+	FALSE
chr3	16301791	G	A	4.37274E-05	DPH3	-	FALSE
chr3	88199298	T	C	0.00112	C3orf38	+	FALSE
chr2	99813003	A	G	0.00226	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	230461079	G	A	9.74527E-05	PGBD5	-	FALSE
chr9	100847551	G	T	0.00543	TRIM14	-	FALSE	MIR	SINE,Alu
chr1	109747437	A	G	0.00104	KIAA1324	+	TRUE	AluJr4	SINE,Alu
chr1	145282904	A	G	0.00542	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr19	7084638	A	G	0.00024	ZNF557	+	TRUE	AluJb	SINE,Alu
chr1	1337738	C	A	4.14710E-05	MRPL20	-	FALSE
chr1	231557138	C	G	0.00394	EGLN1	-	FALSE
chr3	107763040	G	A	1.74111E-05	CD47	-	FALSE
chr5	115165731	T	C	0.00410	ATG12	-	TRUE	AluSq2	SINE,Alu
chr15	63363384	C	A	0.00161	TPM1	+	FALSE
chr17	421034	T	C	0.00998	VPS53	-	TRUE	AluSx1	SINE,Alu
chr1	28835847	A	G	5.60567E-05	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	16958047	C	T	0.00193		.	FALSE
chr1	143915747	G	A	0.00603		.	FALSE
chr1	161160460	T	A	0.00298	ADAMTS4	-	FALSE	(CA)n	SINE,Alu
chr2	132481480	T	C	0.00989	C2orf27A	+	FALSE
chr1	51822219	G	A	0.00017	EPS15	-	FALSE
chr19	50370106	T	G	0.00359	PNKP	-	FALSE
chr1	227071525	C	T	0.00013	PSEN2	+	FALSE
chr2	202038657	A	G	0.00354		.	FALSE	AluSx1	SINE,Alu
chr1	32661600	C	T	0.00584	TXLNA	+	FALSE	(T)n	SINE,Alu
chr1	156564754	A	G	0.00562	GPATCH4	-	FALSE
chr5	14397238	T	C	0.00552	TRIO	+	FALSE
chr1	16889502	T	C	0.00516	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	28920823	A	G	0.00850	RAB42	+	FALSE	AluSx	SINE,Alu
chr1	12638964	T	C	0.00884	DHRS3	-	FALSE
chr16	15023271	G	A	0.00403		.	FALSE
chr4	42003671	A	G	0.00535	SLC30A9	+	FALSE
chr6	52860422	G	C	0.00024		.	FALSE	7SK	SINE,Alu
chr4	2940243	T	A	0.00028	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr3	194361768	C	T	1.49766E-06	LSG1	-	FALSE	MSTA	SINE,Alu
chr2	61277776	A	G	0.00178	PEX13	+	TRUE	AluY	SINE,Alu
chr17	48155425	G	A	0.00603	ITGA3	+	FALSE
chr3	44772983	C	T	0.00795	ZNF501	+	FALSE
chr3	33430398	T	A	0.00025	UBP1	-	FALSE
chr1	16944809	G	C	9.47535E-05	CROCCP2	-	FALSE
chr1	10518756	T	C	0.00937		.	FALSE	AluSx1	SINE,Alu
chr1	74672474	G	A	0.00014	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chr1	16958064	A	G	2.44983E-05		.	FALSE
chr2	87820785	C	T	0.00110	LINC00152	+	FALSE
chr1	27205632	T	C	0.00471		.	FALSE	FLAM_A	SINE,Alu
chr1	204526727	A	G	0.00033	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	45975670	A	G	8.16323E-05	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr5	40832548	A	T	0.00048	RPL37	-	FALSE
chr1	19953120	G	A	0.00025	MINOS1,MINOS1-NBL1	+	FALSE
chr5	102345546	A	C	0.00463	PAM	+	FALSE
chr1	17735266	G	A	0.00471	RCC2	-	FALSE
chr2	234183368	A	G	0.00369	ATG16L1	+	FALSE
chr6	114181220	A	G	0.00265	MARCKS	+	FALSE
chr1	10517623	T	C	0.00145		.	FALSE	AluSx1	SINE,Alu
chr1	150594611	G	T	0.00329	ENSA	-	FALSE
chr19	19791273	A	G	0.00121	ZNF101	+	TRUE	AluSq2	SINE,Alu
chr6	3021492	A	G	0.00613	HTATSF1P2	-	FALSE	Tigger3a	SINE,Alu
chr14	53243545	T	C	3.01634E-08	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr2	174828621	A	C	0.00315	SP3	-	FALSE
chr1	145500920	T	A	0.00286	NBPF20,NBPF10,LIX1L	+	FALSE
chr15	102516561	T	C	0.00805	WASH3P	+	FALSE
chr5	133738270	T	C	0.00067	CDKN2AIPNL	-	TRUE	FRAM	SINE,Alu
chr1	32687472	G	A	0.00877	TMEM234,EIF3I	+,-	FALSE
chr1	6583066	T	C	0.00180	NOL9	-	TRUE	AluSx4	SINE,Alu
chr3	10192709	C	T	0.00082	VHL	+	FALSE	AluSx1	SINE,Alu
chr1	118167524	C	T	0.00902	FAM46C	+	FALSE
chr1	32681797	C	T	0.00791	DCDC2B,TMEM234	+,-	FALSE
chr2	208619315	A	G	0.00091	CCNYL1	+	TRUE	EutTc1-N1	SINE,Alu
chr3	100467676	A	T	0.00067	TFG	+	FALSE
chr1	155695998	A	G	0.00574	DAP3	+	TRUE	AluSp	SINE,Alu
chr5	41917695	C	T	0.00546	C5orf51	+	FALSE
chr17	4928356	A	G	0.00048	KIF1C	+	TRUE	AluSz	SINE,Alu
chr2	70131954	G	C	0.00370	SNRNP27	+	FALSE
chr1	46828460	C	T	0.00101	NSUN4	+	FALSE
chr1	36794266	A	G	0.00141		.	FALSE	AluJb	SINE,Alu
chr6	74303543	T	C	0.00031	SLC17A5	-	TRUE	AluJr	SINE,Alu
chr1	46828653	T	A	0.00920	NSUN4	+	FALSE
chr4	5830393	C	T	0.00220	CRMP1	-	FALSE
chr8	30536152	T	C	0.00015	GSR	-	TRUE	AluJr	SINE,Alu
chr17	41144250	G	T	0.00025	RUNDC1	+	FALSE
chr1	179042544	A	G	0.00722	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr5	134062605	C	T	0.00019	SEC24A	+	FALSE
chr5	122165482	C	T	0.00367	SNX2	+	FALSE	(AC)n	SINE,Alu
chr2	20401856	T	G	0.00263	SDC1	-	FALSE
chr1	16890639	C	T	5.60894E-05	NBPF1	-	FALSE
chr1	224517842	C	T	0.00014	NVL	-	FALSE
chr1	33149376	A	G	0.00357	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	31732514	C	T	0.00588	SNRNP40	-	FALSE
chr1	16932495	A	C	0.00199	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	12677549	T	A	1.84464E-05	DHRS3	-	FALSE	(A)n	SINE,Alu
chr4	7060959	T	C	0.00832	GRPEL1	-	FALSE
chr1	116237496	T	A	0.00934	VANGL1	+	FALSE
chr2	86364710	T	C	0.00273	PTCD3	+	FALSE
chr4	17803673	T	C	0.00206	DCAF16	-	TRUE	AluY	SINE,Alu
chr1	33149496	A	G	0.00662	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chrM	9756	G	A	0.00315		.	FALSE
chr1	6583593	T	C	0.00088	NOL9	-	TRUE	AluSq	SINE,Alu
chrX	3526658	A	T	0.00152	PRKX	-	FALSE	(AC)n	SINE,Alu
chr1	113455441	C	A	0.00047	SLC16A1	-	FALSE	(A)n	SINE,Alu
chr4	39549701	T	C	0.00269	UGDH-AS1,SMIM14	+,-	FALSE	AluSp	SINE,Alu
chr1	110276861	T	C	0.00180	GSTM3	-	FALSE	LTR77	SINE,Alu
chr12	125269475	T	C	0.00184	SCARB1	-	FALSE
chr3	56654600	C	G	0.00490	CCDC66,FAM208A	+,-	FALSE
chr1	46075720	A	G	0.00105	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	9163334	T	C	0.00108		.	FALSE	AluSp	SINE,Alu
chr5	151041869	T	A	0.00305	SPARC	-	FALSE
chr2	229890660	A	G	0.00596	PID1	-	FALSE
chr1	145329094	G	C	0.00273	NBPF20,NBPF10	+	FALSE
chr1	179044180	A	G	0.00416	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	204521631	A	G	0.00024	MDM4	+	TRUE	AluSg	SINE,Alu
chr3	178978532	T	C	0.00061	KCNMB3	-	FALSE
chr12	96259951	G	A	0.00328	SNRPF	+	FALSE
chr15	72635903	C	T	0.00334	HEXA	-	FALSE
chr1	33071096	A	G	0.00238	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr1	145513125	A	G	0.00274	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	214524576	T	C	0.00337	PTPN14	-	TRUE	AluSg	SINE,Alu
chr4	153545691	T	C	0.00671		.	FALSE	AluJb	SINE,Alu
chr1	151288172	G	A	0.00312	PI4KB	-	FALSE
chr5	40829980	T	C	0.00752		.	FALSE	AluSp	SINE,Alu
chr19	39981168	A	G	0.00446	TIMM50	+	TRUE	AluJr	SINE,Alu
chr1	142619386	G	A	0.00637		.	FALSE
chr1	29446554	C	A	0.00682	EPB41,TMEM200B	+,-	FALSE
chr5	442075	C	A	0.00962	EXOC3-AS1	-	FALSE
chr1	33148216	A	G	0.00321	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr2	24227417	A	G	0.00831		.	FALSE	AluSc	SINE,Alu
chr1	224573601	C	T	0.00587	WDR26	-	FALSE
chr2	24494638	T	G	0.00507	ITSN2	-	FALSE	(TATCCT)n	SINE,Alu
chr1	1597423	C	T	2.12697E-10	CDK11B,SLC35E2B	-	FALSE
chr1	182569318	G	T	0.00101	RGS16	-	FALSE
chr5	68858545	C	G	0.00268	GTF2H2C,GTF2H2C_2	+	FALSE	AluSz	SINE,Alu
chr9	133777993	G	T	0.00959	FIBCD1	-	FALSE
chr1	144014068	T	C	0.00029		.	FALSE
chr4	152020782	C	T	0.00989	RPS3A	+	FALSE
chr14	53109823	T	C	2.25911E-06	ERO1A	-	TRUE	MER53	SINE,Alu
chr1	117531096	C	T	0.00168	PTGFRN	+	FALSE
chr2	174086933	C	A	0.00457	ZAK,MLK7-AS1	+,-	FALSE	AluJo	SINE,Alu
chr1	152552285	C	A	0.00400	LCE3D	-	FALSE
chr1	17735300	C	A	0.00128	RCC2	-	FALSE
chr6	33385535	A	G	0.00671		.	FALSE
chr2	109401286	G	T	0.00087	RANBP2	+	FALSE
chr1	21101369	T	C	0.00244	HP1BP3	-	TRUE	AluSc	SINE,Alu
chr1	14604	A	G	0.00304	WASH7P	-	FALSE
chr1	789187	C	G	5.07459E-05	LINC01128	+	FALSE
chr1	33240842	C	T	0.00446	YARS	-	FALSE
chr11	65065373	A	G	0.00487	POLA2	+	TRUE	AluY	SINE,Alu
chr1	26143725	A	T	0.00818	SEPN1	+	FALSE	AluSx	SINE,Alu
chr3	48787633	T	C	0.00287	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr1	36752811	C	T	0.00000	THRAP3	+	FALSE
chr3	12598618	C	T	0.00812	MKRN2	+	FALSE
chr14	92629726	T	A	0.00787	CPSF2	+	FALSE
chr2	206982257	T	C	0.00023		.	FALSE	AluSg7	SINE,Alu
chr1	229586611	T	C	0.00794	NUP133	-	TRUE	AluSz	SINE,Alu
chr2	61277384	A	G	0.00339	PEX13	+	TRUE	AluSx	SINE,Alu
chr1	143186597	G	A	0.00644	LOC102723769	-	FALSE
chr1	22352040	G	T	0.00255	LOC101928043,LINC00339	+,-	FALSE
chr1	31532312	C	T	0.00215	PUM1	-	FALSE
chr3	98531342	A	G	0.00607	DCBLD2	-	FALSE
chr18	6986227	G	A	3.73397E-05	LAMA1	-	FALSE
chr2	99812465	A	G	2.16984E-05	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	160966301	T	C	7.77749E-07	F11R	-	TRUE	AluSg	SINE,Alu
chr1	151955393	T	C	7.77942E-05	S100A10	-	FALSE
chr1	27107948	G	A	0.00177	ARID1A	+	FALSE
chr2	136541072	T	C	0.00496	UBXN4	+	FALSE
chr7	117825681	A	G	1.90524E-05	LSM8	+	FALSE
chr2	201735790	G	C	0.00671	PPIL3	-	FALSE
chr1	94351063	A	T	0.00907	GCLM	-	FALSE
chr19	59093999	A	G	0.00018	CENPBD1P1	+	TRUE	AluY	SINE,Alu
chr1	152187183	C	A	0.00373	HRNR	-	FALSE
chr2	29135468	C	G	0.00262	WDR43	+	FALSE
chr17	40723650	A	T	0.00250	MLX	+	FALSE
chr1	32638775	A	T	0.00949	KPNA6	+	FALSE	(A)n	SINE,Alu
chr2	208619461	A	G	2.24939E-05	CCNYL1	+	TRUE	FAM	SINE,Alu
chr6	36894337	G	A	0.00607	C6orf89	+	FALSE	GA-rich	SINE,Alu
chr3	15113799	T	C	0.00200	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	19543456	T	C	0.00011	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	47905555	A	C	0.00661	FOXD2	+	FALSE
chr1	10519910	T	C	7.27344E-07		.	FALSE	AluJr	SINE,Alu
chr1	148252049	A	C	0.00493	NBPF8,NBPF14,NBPF9	-	FALSE
chr1	16945570	A	G	0.00131	CROCCP2	-	FALSE
chr17	41144609	G	A	0.00821	RUNDC1	+	FALSE
chr4	165998694	T	C	0.00041	TMEM192	-	TRUE	AluSg	SINE,Alu
chr12	27574182	G	C	0.00014	ARNTL2,ARNTL2-AS1	+,-	FALSE
chr16	69151495	T	A	0.00304	HAS3	+	FALSE	(T)n	SINE,Alu
chr1	222907790	C	T	0.00253	BROX	+	FALSE
chr2	1636938	C	T	0.00072	PXDN	-	FALSE	(T)n	SINE,Alu

RBP	SHARPIN
Knock-Method	siRNA
RBP Family	zf-RanBP
Biosample Name	MCF7
Tissue Type	Breast
Biosample Type	Cell line
# of Control	3
# of Treat	3
Species	Human
Data Source	GEO
Profile ID	GSE77261
Platform	GPL20301
Pubmed ID	29100376

SHARPIN - Target Gene Network