Dataset Overview
RBP
SYF2
Knock-Method
siRNA
RBP Family
SYF2
Biosample Name
MCF7
Tissue Type
Breast
Biosample Type
Cell line
# of Control
1
# of Treat
2
Species
Human
Data Source
GEO
Profile ID
GSE126365
Platform
GPL16791
Pubmed ID
31943118
SYF2 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of SYF2
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
ABCB10
8.75
13.09
0.51089
0.04229
1.00000
ABCC1
14.66
26.27
0.80154
0.00095
0.17864
ABLIM1
7.78
5.82
-0.49369
0.04360
1.00000
ABR
10.69
27.04
1.37211
3.87649E-08
9.09360E-05
AC002310.12
2.65
1.59
-0.78772
0.03352
1.00000
AC002480.3
3.03
1.82
-0.79149
0.04614
1.00000
AC003092.1
32.31
20.21
-0.73701
0.02061
0.88042
AC004889.1
1.61
0.44
-1.92302
1.20199E-07
0.00019
AC015987.2
12.4
25.64
0.98928
0.00021
0.06939
AC074389.9
29.85
18.06
-0.77082
0.01026
0.66246
Showing 1 to 10 of 595 entries
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Function Analysis of Target Genes of SYF2
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AAMDC
77595825_77595962_77587993_77588095_77611616_77611817
0.00967
0.363
DataSet_02_79
View details
AASDH
57248642_57248763_57244313_57244630_57253527_57253589
0.00002
0.412
DataSet_02_79
View details
ABCA2
139904644_139904823_139904434_139904576_139905071_139905189
0.00011
-0.8
DataSet_02_79
View details
ABCA2
139918289_139918292_139917392_139917504_139918594_139918688
0.00000
-1.0
DataSet_02_79
View details
ABCC4
95886863_95887088_95862945_95863035_95899228_95899349
0.00115
-0.467
DataSet_02_79
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ABCD4
74764341_74764772_74763035_74763152_74766852_74766971
0.00224
0.584
DataSet_02_79
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ABCD4
74764632_74764772_74763035_74763152_74766852_74766971
0.00224
0.584
DataSet_02_79
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ABCD4
74766250_74766378_74763035_74763152_74766852_74766971
0.00977
0.452
DataSet_02_79
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ABHD6
58244129_58244351_58242288_58242432_58252915_58253072
0.00983
-0.119
DataSet_02_79
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ABL2
179102446_179102509_179100445_179100616_179112067_179112191
0.00012
0.693
DataSet_02_79
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Showing 1 to 10 of 1,551 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC096887.1
53111994_53112227_53119765_53119868_53111703_53111844
0.00001
1.0
DataSet_02_79
View details
ACTN2
236897732_236897818_236898934_236899020_236894532_236894614
0.00002
-0.571
DataSet_02_79
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AKAP13
86201767_86201821_86205618_86205684_86198647_86199018
0.00088
-0.342
DataSet_02_79
View details
AL157392.3
13690619_13690768_13694407_13694489_13690084_13690230
0.00160
-0.523
DataSet_02_79
View details
AL157392.3
13690619_13690768_13694407_13694489_13690084_13690230
0.00096
-0.354
DataSet_02_79
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AL157392.3
13694407_13694489_13694845_13694882_13690084_13690230
0.00000
1.0
DataSet_02_79
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AL157392.3
13694407_13694489_13694845_13694882_13690625_13690768
0.00002
1.0
DataSet_02_79
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ALDH7A1
125918542_125918666_125919623_125919704_125912770_125912903
0.00229
-0.236
DataSet_02_79
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ALDOA
30077196_30077248_30078205_30078359_30075744_30075826
0.00984
-0.119
DataSet_02_79
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APBB2
41120105_41120222_41140058_41140173_41102655_41102767
0.00175
-0.178
DataSet_02_79
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Showing 1 to 10 of 119 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABR
961083_961285_961209_961285_960237_960342
0.00286
-0.367
DataSet_02_79
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ACSF2
48538602_48538731_48538602_48538648_48538993_48539047
0.00000
0.824
DataSet_02_79
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AHRR
344007_344084_344007_344079_353844_354026
0.00030
-0.616
DataSet_02_79
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AKT2
40742163_40743998_40743875_40743998_40741796_40742011
0.00015
0.626
DataSet_02_79
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ALG13
110925359_110925522_110925359_110925463_110928192_110928331
0.00400
-0.15
DataSet_02_79
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ANAPC15
71822457_71822542_71822487_71822542_71822202_71822332
0.00463
0.172
DataSet_02_79
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AP4M1
99699502_99700016_99699502_99699591_99700297_99700404
0.00003
1.0
DataSet_02_79
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APRT
88877904_88878064_88877957_88878064_88876477_88876556
0.00278
-0.157
DataSet_02_79
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ATP13A2
17331186_17331316_17331201_17331316_17330826_17330903
0.00267
-0.184
DataSet_02_79
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ATXN2
111923068_111923135_111923074_111923135_111908361_111908546
0.00007
-0.615
DataSet_02_79
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Showing 1 to 10 of 180 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AARSD1
41108420_41108577_41108420_41108521_41109154_41109212
0.00685
-0.281
DataSet_02_79
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ABLIM2
8009785_8009927_8009785_8009924_8010776_8010829
0.00001
-1.0
DataSet_02_79
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ACAD11
132297639_132297900_132297639_132297725_132298335_132298402
0.00008
0.625
DataSet_02_79
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ACOT8
44472165_44472411_44472165_44472360_44472901_44473059
0.00171
0.349
DataSet_02_79
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ADCY3
25048913_25048998_25048913_25048995_25050414_25050477
0.00167
-0.274
DataSet_02_79
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ADCY6
49166077_49166207_49166077_49166122_49166290_49166326
0.00105
0.65
DataSet_02_79
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AK1
130630599_130630791_130630599_130630754_130634101_130634218
0.00296
0.313
DataSet_02_79
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AKAP10
19861326_19861884_19861326_19861880_19866152_19866335
0.00532
-0.31
DataSet_02_79
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AL157392.3
13696183_13696427_13696352_13696427_13694407_13694489
0.00001
-1.0
DataSet_02_79
View details
AL365295.1
53836169_53836219_53836172_53836219_53784748_53784856
0.00000
-1.0
DataSet_02_79
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A1BG-AS1
58865079_58866549_58865079_58865223_58865734_58866549
0.00003
1.0
DataSet_02_79
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AASS
121718915_121719766_121718915_121719004_121719650_121719766
0.00950
-0.611
DataSet_02_79
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ABCA2
139905424_139905761_139905424_139905557_139905637_139905761
0.00111
-0.456
DataSet_02_79
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ABCC5
183701540_183705705_183701540_183702682_183705557_183705705
0.00021
0.239
DataSet_02_79
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ABCF3
183907175_183907545_183907175_183907231_183907344_183907545
0.00570
-0.136
DataSet_02_79
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AC026412.1
1599034_1599942_1599034_1599384_1599741_1599942
0.00053
0.519
DataSet_02_79
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AC040162.1
67968699_67969381_67968699_67968851_67969198_67969381
0.00701
-0.131
DataSet_02_79
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ACAD11
132297639_132298402_132297639_132297725_132298335_132298402
0.00003
1.0
DataSet_02_79
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ACP2
47269191_47269684_47269191_47269278_47269588_47269684
0.00000
-0.834
DataSet_02_79
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ACY1
52020620_52021469_52020620_52020677_52021003_52021469
0.00003
0.667
DataSet_02_79
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
45975358
A
G
0.00089
MMACHC
+
TRUE
AluSg7
SINE,Alu
chr1
118408218
C
A
0.00857
GDAP2
-
FALSE
chr1
16946336
G
A
0.00409
CROCCP2
-
FALSE
chr1
27202812
T
C
0.00353
.
FALSE
AluSq2
SINE,Alu
chr1
33149496
A
G
0.00504
SYNC,RBBP4
+,-
FALSE
AluSx1
SINE,Alu
chr1
156713558
G
A
8.10199E-06
HDGF
-
FALSE
chr1
1344998
A
G
0.00062
.
FALSE
AluSg
SINE,Alu
chr1
36642420
T
C
9.55653E-06
MAP7D1
+
FALSE
chr1
210029539
G
A
0.00231
DIEXF
+
FALSE
chr1
77759578
A
G
0.00404
AK5
+
FALSE
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression