Dataset Overview
RBPSYF2
Knock-MethodsiRNA
RBP FamilySYF2
Biosample NameMCF7
Tissue TypeBreast
Biosample TypeCell line
# of Control1
# of Treat2
SpeciesHuman
Data SourceGEO
Profile IDGSE126365
PlatformGPL16791
Pubmed ID31943118

SYF2 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of SYF2
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of SYF2


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr145975358AG0.00089MMACHC+TRUEAluSg7SINE,Alu
chr457801194AT0.00834REST+FALSE
chr1118408218CA0.00857GDAP2-FALSE
chr116946336GA0.00409CROCCP2-FALSE
chr543298557CT0.00643HMGCS1-FALSE
chr2118854088CT0.00543INSIG2+FALSE
chr6114182783AG0.00442MARCKS+FALSE
chr552388459AT0.00052ITGA2+FALSE
chr127202812TC0.00353.FALSEAluSq2SINE,Alu
chr42940434TC1.52137E-05NOP14-AS1,NOP14+,-FALSEAluJoSINE,Alu
chr764435677GA0.00366ZNF117-FALSE
chr133149496AG0.00504SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr1156713558GA8.10199E-06HDGF-FALSE
chr271411975AC0.00463PAIP2B-FALSE
chr2223436459AT1.48017E-05FARSB-FALSE
chr11344998AG0.00062.FALSEAluSgSINE,Alu
chr136642420TC9.55653E-06MAP7D1+FALSE
chr3124948045GC0.00784ZNF148-FALSE
chr1742880190TC0.00284GJC1-TRUEAluJbSINE,Alu
chr1210029539GA0.00231DIEXF+FALSE
chr177759578AG0.00404AK5+FALSE
chr116893721AC0.00179NBPF1-FALSE
chr179115905TC0.00113IFI44+FALSE
chr1688891240CA0.00826GALNS-FALSE
chr117345245CT0.00812SDHB-FALSE
chr1749042386TC4.28426E-05SPAG9-TRUEAluJbSINE,Alu
chr1138356CA0.00481LOC729737-FALSE
chr1227953266GT0.00198KLHL42+FALSE
chr3113351702AG0.00042.FALSE7SLRNASINE,Alu
chr162628531AG0.00716PATJ+TRUEAluSg4SINE,Alu
chr111901592TC0.00076CLCN6,NPPA-AS1+FALSE
chr116133987TC0.00707UQCRHL-FALSE
chr1150281090AG3.10555E-05MRPS21+TRUEAluSzSINE,Alu
chr5102345546AC0.00463PAM+FALSE
chr178414285TA0.00179FUBP1-FALSE
chr2128602913GA0.00230.FALSE
chr128661656AG0.00319MED18+TRUEAluSgSINE,Alu
chr333909024AT0.00134PDCD6IP+FALSE
chr1490509582TC0.00017TDP1+FALSE
chr145671430AT0.00041ZSWIM5-FALSE
chr345721891AG0.00163LIMD1,LIMD1-AS1+,-FALSEAluJbSINE,Alu
chr1117648269GA0.00988.FALSEAluSz6SINE,Alu
chr568738649AT0.00716.FALSE
chr9103064530GA0.00036TEX10-FALSE
chr299772827AG0.00377LIPT1+TRUEAluSx1SINE,Alu
chr110520683TC0.00058DFFA-TRUEAluSc8SINE,Alu
chr1951172526GC0.00276SHANK1-FALSE
chr258387000CT0.00027VRK2,FANCL+,-FALSE
chr4107246251GT3.16074E-09AIMP1+FALSE
chr146078630AG0.00131NASP+FALSE
chr146076467AG0.00118NASP+TRUEAluSxSINE,Alu
chr1149581854CA0.00175LINC00623,LINC00869,LOC103091866+FALSEL2bSINE,Alu
chr123689522GT0.00570ZNF436-FALSE
chr1225357680TC0.00861ETFRF1+FALSE
chr536143392CT0.00151LMBRD2-FALSE
chr1121133779CG0.00567SRGAP2-AS1,SRGAP2B,SRGAP2C+,-FALSEL1MB4SINE,Alu
chr1207942472AG0.00273CD46+TRUEAluSg4SINE,Alu
chr5130536797AG0.00841LYRM7+TRUEAluSx4SINE,Alu
chr63021352TC0.00082HTATSF1P2-TRUEAluJr4SINE,Alu
chr19328106AG0.00394H6PD+TRUEAluJrSINE,Alu
chr1942375554AG0.00458.FALSEAluSxSINE,Alu
chr175336210TC0.00868RPAIN,C1QBP+,-FALSE
chr224225509AG0.00132.FALSEAluSq2SINE,Alu
chr2206987725TC0.00625.FALSEAluJbSINE,Alu
chr8133837579GA0.00019PHF20L1+FALSEA-richSINE,Alu
chr1709591GA0.00226LOC100288069-FALSE
chr122419433TG0.00200CDC42+FALSE
chr166058513AG0.00091LEPR+FALSE
chr642855962AG0.00045RPL7L1+TRUEAluSzSINE,Alu
chr177166017GA0.00627.FALSE
chr16283264TC0.00521ICMT-TRUEAluSx3SINE,Alu
chr5174956497CT0.00487SFXN1+FALSE
chr1120839683GA0.00875FAM72B+FALSE
chr7924602AG0.00195GET4+TRUEAluJbSINE,Alu
chr1114438951AG0.00017AP4B1-AS1,AP4B1+,-FALSE
chr634254585GT0.00519.FALSEAluSq2SINE,Alu
chr1331033325CA0.00792HMGB1-FALSE
chr122109370GA0.00371USP48-FALSE
chr1738974612TC0.00963KRT10-FALSE
chr237330435TC3.14905E-06.FALSEAluSq2SINE,Alu
chr2128620437TA0.00388AMMECR1L-FALSE
chr540982394CT0.00037C7+FALSEAluSx1SINE,Alu
chr147716039AG0.00863STIL-FALSE
chrX123047168AG2.82326E-05XIAP+TRUEAluSxSINE,Alu
chr110518052TC7.90759E-05.FALSEAluJrSINE,Alu
chr116918486CT0.00415NBPF1-FALSE
chr273460310GC0.00091PRADC1-FALSE(CGGCGC)nSINE,Alu
chr136068237TC0.00974PSMB2-TRUEAluScSINE,Alu
chr167874697TC0.00190SERBP1-TRUEAluSx3SINE,Alu
chr2152334323AG0.00504.FALSEAluSqSINE,Alu
chr514696117TC0.00807OTULIN+FALSE
chr119238562GA3.36880E-06IFFO2-FALSE
chr830536606TC9.30891E-05GSR-TRUEAluSpSINE,Alu
chr238971644TG0.00021SRSF7-FALSE
chr1173864944GT2.40127E-05.FALSE
chr194351064AT0.00620GCLM-FALSE
chr285776644TC0.00127GGCX-TRUEAluSz6SINE,Alu
chr1180854773AG0.00800XPR1+FALSE
chr2206983255TC0.00246.FALSEAluJbSINE,Alu
chr128859265CG0.00030RCC1+FALSE
chr1061548855GT0.00070CCDC6-FALSE
chr145976112AG1.14998E-06MMACHC+TRUEAluJrSINE,Alu
chr1118066459AG0.00496MAN1A2+FALSE
chr3156259295TC0.00039SSR3-TRUEAluSq2SINE,Alu
chr7115898442GC2.36867E-05TES+FALSEAluSxSINE,Alu
chr1591044384TG0.00440IQGAP1+FALSE
chr16283434TC4.87712E-06ICMT-TRUEAluSx3SINE,Alu
chr143996594TC0.00836PTPRF+FALSE(CGGCTC)nSINE,Alu
chr261764920CA0.00363XPO1-FALSE
chr227838058CA0.00063ZNF512+FALSE
chr1450792966AT0.00852.FALSEAluSxSINE,Alu
chr146076543AG0.00989NASP+TRUEAluSxSINE,Alu
chr1173009536TA0.00519.FALSE
chr2242173247GA0.00345HDLBP-FALSE
chr5145506100GA0.00586LARS-FALSE
chr1160966434TC4.88498E-15F11R-TRUEAluSgSINE,Alu
chr5180262080AG0.00259LINC00847+TRUEMLT2B3SINE,Alu
chr1563356574GA0.00845TPM1+FALSE
chr3179115697TC3.71610E-05GNB4-TRUEAluSg7SINE,Alu
chr140975260GC0.00902EXO5+FALSE
chr155319888TG0.00000DHCR24-FALSE
chr1161088583TG0.00822NIT1+FALSE
chr133071096AG0.00238ZBTB8A+TRUEAluSx1SINE,Alu
chr7148700782GA0.00209PDIA4-FALSE
chr142693597AG0.00106FOXJ3-FALSE
chr1619715543TC0.00879.FALSEAluSgSINE,Alu
chr1541597574AG2.24597E-05.FALSEAluSz6SINE,Alu
chr140539212CA0.00380PPT1-FALSE
chr466439707TC0.00148EPHA5-FALSE
chr1131452571AG0.00084DNAJC24+TRUE
chr12125267857TC0.00702SCARB1-TRUEFRAMSINE,Alu
chr1145688943AG0.00492NBPF20,NBPF10,RNF115+TRUEAluSc8SINE,Alu
chr357743171CT1.04824E-07SLMAP+FALSE
chr721941393AT0.00937CDCA7L-FALSE
chr5180682611CA9.20591E-05CTC-338M12.4+FALSE
chr3183861750AC1.09807E-05EIF2B5+FALSE
chr1757279273AG0.00513PRR11+TRUEAluSq2SINE,Alu
chr1109746819AG0.00390KIAA1324+TRUEAluJbSINE,Alu
chr136068210TC0.00119PSMB2-TRUEAluScSINE,Alu
chr5122682348AG0.00377CEP120-FALSE
chr126143697GC0.00778SEPN1+FALSE
chr11459332GA1.33172E-08ATAD3A+FALSE
chr4155456608AG0.00734PLRG1-FALSEL1MC5SINE,Alu
chr11549354GA0.00383.FALSEHAL1SINE,Alu
chr136067925TC4.53272E-07PSMB2-TRUEAluSzSINE,Alu
chr1201845882GA0.00890IPO9+FALSE
chr110520692TC0.00973DFFA-TRUEAluSc8SINE,Alu
chr110520725TC0.00234DFFA-TRUEAluSc8SINE,Alu
chr1942376872AG0.00647.FALSEAluSpSINE,Alu
chr2201842492TC0.00107FAM126B-TRUEAluJbSINE,Alu
chr2129023282GC0.00170HS6ST1-FALSE
chr192862804AG0.00043.FALSEAluJrSINE,Alu
chr2152334349AG0.00171.FALSEAluSqSINE,Alu
chr4124237124AG0.00119SPATA5+TRUEAluJrSINE,Alu
chrX131339006TA0.00405RAP2C-FALSE
chrX2824933TC0.00066ARSD-TRUEAluSx1SINE,Alu
chr116889423GC6.92544E-07NBPF1-FALSEL1MC4SINE,Alu
chr123884597GA0.00269ID3-FALSE
chr1113243048CT0.00941MOV10+FALSE
chr229135468CG0.00217WDR43+FALSE
chr3156258227TC0.00094SSR3-TRUEAluYk3SINE,Alu
chr136068370TC0.00067PSMB2-TRUEAluScSINE,Alu
chr119542401TC0.00010LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1145689611CA0.00104NBPF20,NBPF10+FALSEAluSgSINE,Alu
chr1946289409CT6.23760E-05DMWD-FALSE
chr131837516GC5.10721E-05ZCCHC17+FALSE
chr111783041AG0.00036.FALSEAluSxSINE,Alu
chr195660026GT0.00129TMEM56-RWDD3,LOC101928118,TMEM56+,-FALSE
chr342253664CT0.00065TRAK1+FALSE
chr1162494683GT0.00269UHMK1+FALSEAluSg4SINE,Alu
chr11126147713CG0.00384FOXRED1+FALSE
chr1220231946TC0.00439RNU5F-1,BPNT1+,-FALSEAluSzSINE,Alu
chr114106402AT0.00914PRDM2+FALSE
chr16282383TC0.00371ICMT-TRUEAluSzSINE,Alu
chr124175288CG0.00646FUCA1-FALSE
chr237329307TC0.00102.FALSEAluJr4SINE,Alu
chr1145509570AG0.00037NBPF20,NBPF10,RBM8A+TRUEAluJrSINE,Alu
chr16283264TC0.00095ICMT-TRUEAluSx3SINE,Alu
chrX152916235GA0.00015DUSP9+FALSE
chr116890176AC0.00753NBPF1-FALSE
chr254888359AG3.08576E-05SPTBN1+FALSE
chr439550978TC0.00558UGDH-AS1,SMIM14+,-FALSEAluSzSINE,Alu
chr1150704633TC0.00080CTSS-TRUEAluJoSINE,Alu
chr457796757GA0.00011REST+FALSE
chr540829780TC0.00753.FALSELTR66SINE,Alu
chr1116771525TC0.00014C11orf58+FALSE
chr168167217GT0.00036GNG12-FALSE
chr136067817TC0.00120PSMB2-TRUEAluSzSINE,Alu
chr28823956AG2.51922E-06ID2+FALSE
chr133148736AG0.00525SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr5149363414AG0.00503SLC26A2+TRUEAluJrSINE,Alu
chr110459165GA2.83145E-06PGD+FALSE
chr375474643TC0.00850FAM86DP-TRUEAluJoSINE,Alu
chr1101442211TC0.00590SLC30A7+FALSE
chr1184762524TC0.00471FAM129A-TRUEAluSzSINE,Alu
chr11595500TC0.00482CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr2018468512TC0.00072RBBP9-TRUEAluSz6SINE,Alu
chr12109039869TC0.00795CORO1C-FALSE
chr1144829799GC2.98942E-05NBPF20,NBPF9+FALSEL1MC4SINE,Alu
chr2232574807CG0.00134PTMA+FALSE
chr1726672363GA0.00599TNFAIP1+FALSE
chr3195451488CT1.73907E-06MUC20+FALSE
chr116534255CG0.00980ARHGEF19-FALSE
chr1235612219TA0.00148TBCE,B3GALNT2+,-FALSE
chr1145512950AG2.03454E-08NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr7158536267TC0.00298ESYT2-FALSE
chr4170017406AT0.00534SH3RF1-FALSE
chr11469787CT0.00010ATAD3A+FALSE
chr116927391TC0.00110NBPF1-FALSE
chr153289759AG0.00383ZYG11B+TRUEAluSzSINE,Alu
chr11570928GT0.00173CDK11B-FALSE
chr9136209404GA0.00361MED22-FALSE(CAGGG)nSINE,Alu
chr9132575828AT0.00445TOR1A-FALSE
chr3196080528TC0.00700UBXN7-TRUEAluSxSINE,Alu
chr12125511958AG0.00494THRIL-FALSEAluSx1SINE,Alu
chr1773939212TC0.00376ACOX1-TRUEAluSx1SINE,Alu
chr631324110GA0.00521.FALSE
chr2206981856TC0.00174.FALSEAluJbSINE,Alu
chr1145369556AG0.00373NBPF20,NBPF10+TRUEL1MC4SINE,Alu
chr581571875AT0.00027RPS23-FALSE
chr1470838368TC0.00561SYNJ2BP-COX16,SYNJ2BP-TRUEAluSgSINE,Alu
chr1543698008CT0.00175TUBGCP4+FALSEAluSpSINE,Alu
chr117733270TA0.00088RCC2-FALSE
chr1289914261TC0.00135POC1B,GALNT4,POC1B-GALNT4-FALSE
chr5125962086AG0.00231PHAX+TRUEAluSzSINE,Alu
chr111159823TC0.00186EXOSC10,LOC105376736+,-FALSE
chr136067760TC0.00768PSMB2-TRUEAluSzSINE,Alu
chr1542550349AC0.00120TMEM87A-FALSE
chr1145512073AG0.00066NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr5172461896TA0.00335ATP6V0E1+FALSE
chr1740176809AT0.00860NKIRAS2+FALSEAluSzSINE,Alu
chr1328240417CG6.17934E-05POLR1D+FALSE
chr11593023GC2.84325E-05CDK11B,SLC35E2B-FALSE
chr3101576175TC0.00246NFKBIZ+FALSE
chr417802956TC0.00249DCAF16-TRUEAluSzSINE,Alu
chr13546136AG2.71404E-05TPRG1L+FALSEAluSzSINE,Alu
chr1667715890TC9.92672E-05GFOD2-TRUEAluJrSINE,Alu
chr145452227GC0.00084EIF2B3-FALSE
chr16697343CT0.00054DNAJC11-FALSE
chr139470978TA0.00378AKIRIN1+FALSEAluSx1SINE,Alu
chr110521162TC0.00911DFFA-TRUEAluYSINE,Alu
chr1100440553AG0.00179SLC35A3+TRUEAluJbSINE,Alu
chr1155695998AG0.00078DAP3+TRUEAluSpSINE,Alu
chr112628188TC3.43513E-08DHRS3-FALSE
chr1741133090AT0.00148RUNDC1+FALSE
chr111084105TA0.00116TARDBP+FALSE
chr19162394TC0.00072.FALSEAluSxSINE,Alu
chr116929279GA0.00138NBPF1-FALSEERVL-E-intSINE,Alu
chr339452123GA0.00093RPSA+FALSE
chr5130540369CA0.00196LYRM7+FALSETigger4aSINE,Alu
chr2198255334AT0.00551.FALSE
chr154636689AG0.00268.FALSE
chr2240954005CA0.00021NDUFA10-FALSE
chr1154128839GT0.00534TPM3-FALSE
chr35258431GA3.44849E-09EDEM1+FALSE
chr968413593CA0.00342.FALSE
chr1145369706TC0.00186NBPF20,NBPF10+FALSEL1MC4SINE,Alu
chr146076529AG0.00196NASP+TRUEAluSxSINE,Alu
chr1987670TG0.00148AGRN+FALSE
chr174929000AG0.00214KIF1C+TRUEAluYSINE,Alu
chr712250939GA0.00537TMEM106B+FALSE
chr543377330TC0.00039CCL28-TRUEAluSzSINE,Alu
chr4113108680AG0.00109C4orf32+FALSE
chr2232319524TA0.00040NCL-FALSE
chrX77083845TC0.00102MAGT1-TRUEAluSzSINE,Alu
chr120826781CT0.00110MUL1-FALSE
chr1207942456AG0.00322CD46+TRUEAluSg4SINE,Alu
chr933046889TA0.00932SMU1-FALSEAluSzSINE,Alu
chr110517527TC0.00304.FALSEAluSx1SINE,Alu
chr330735330GT0.00402TGFBR2+FALSE
chr1118502757GA0.00793WDR3,SPAG17+,-FALSE(GT)nSINE,Alu
chr1757281098AG0.00181PRR11+TRUEAluSzSINE,Alu
chr1118167515CT0.00018FAM46C+FALSE
chr333186111TC0.00349CRTAP+FALSELTR16A1SINE,Alu
chr699848757CT0.00951PNISR-FALSE(TCTTTT)nSINE,Alu
chr152306079TA0.00033NRDC-FALSE(TCA)nSINE,Alu
chr167874859TC0.00071SERBP1-TRUEAluSxSINE,Alu
chr398518155AT0.00777DCBLD2-FALSE
chr119934930TC0.00026MINOS1,MINOS1-NBL1,RPS14P3+FALSE
chr1629454288TC9.60363E-06SMG1P6,BOLA2-SMG1P6-FALSETigger4aSINE,Alu
chr1114226255GA0.00381MAGI3+FALSE
chr1145688672AT0.00770NBPF20,NBPF10,RNF115+FALSE
chr439550739TC0.00231UGDH-AS1,SMIM14+,-FALSEAluSx1SINE,Alu
chr457326126AG0.00017PAICS+TRUEAluJrSINE,Alu
chr145975584TC0.00327MMACHC+FALSEAluSx4SINE,Alu
chr1144340322GT0.00809NBPF20,LINC00869+,-FALSE
chr549692633TG0.00808EMB-FALSE
chr1958356376AG0.00061ZNF587B+TRUEAluSxSINE,Alu
chr8146280802CT0.00492C8orf33+FALSELTR13SINE,Alu
chr203905907AG0.00325PANK2+TRUEAluSxSINE,Alu
chr119543353TC0.00101LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr371005566CT0.00209FOXP1-FALSE(T)nSINE,Alu
chr286252198TC0.00076POLR1A-TRUEAluSq2SINE,Alu
chr119542679TC0.00575LOC101927895,EMC1+,-FALSEFRAMSINE,Alu
chr1201846616CG0.00209IPO9+FALSE(CA)nSINE,Alu
chr13730400TC0.00800CEP104-TRUEAluSx3SINE,Alu

Differential Expression Gene Analysis