RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr7	116340269	C	T	0.00313	MET	+	FALSE
chr14	62262587	T	C	0.00153	SNAPC1	+	FALSE	FLAM_C	SINE,Alu
chr3	15114306	T	C	0.00036	RBSN	-	TRUE	AluY	SINE,Alu
chr1	9163402	T	C	4.95479E-05		.	FALSE	AluSp	SINE,Alu
chr2	242173247	G	A	0.00345	HDLBP	-	FALSE
chr1	32742441	G	A	2.83845E-11	LCK	+	FALSE
chr5	130537761	A	G	0.00126	LYRM7	+	FALSE	AluJb	SINE,Alu
chr3	44791343	T	C	0.00220	KIAA1143	-	FALSE	AluJr	SINE,Alu
chr1	10520174	T	C	0.00163		.	FALSE	AluSx	SINE,Alu
chr1	15989141	C	G	0.00364		.	FALSE
chr15	101845309	A	G	0.00689	PCSK6	-	FALSE
chr2	29170756	A	T	0.00573	WDR43	+	FALSE
chr5	140025058	G	T	0.00392	NDUFA2	-	FALSE
chr1	6583593	T	C	0.00088	NOL9	-	TRUE	AluSq	SINE,Alu
chr9	115447531	T	C	0.00164	INIP	-	TRUE	AluJb	SINE,Alu
chr17	79476999	G	T	6.09622E-06	ACTG1	-	FALSE
chr1	108742130	T	C	1.29742E-06	SLC25A24	-	FALSE
chr3	189675270	T	G	0.00039	P3H2	-	FALSE
chr3	45722491	A	G	0.00734	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	78414285	T	A	0.00179	FUBP1	-	FALSE
chr15	42824348	A	G	0.00685	SNAP23	+	TRUE	AluSg	SINE,Alu
chr1	211918115	C	T	7.42155E-06	LPGAT1	-	FALSE	MER63D	SINE,Alu
chr19	17535871	A	C	0.00948	MVB12A	+	FALSE
chr1	327441	A	G	1.08612E-09		.	FALSE
chr2	202029998	T	A	0.00350	CFLAR	+	FALSE	(TTA)n	SINE,Alu
chr2	3592615	T	C	0.00331	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr3	28390351	A	G	1.14010E-06	AZI2	-	FALSE
chr5	148382005	C	A	8.42472E-06	SH3TC2	-	FALSE
chr7	44841931	A	G	0.00054	PPIA	+	TRUE	AluSx	SINE,Alu
chr19	9672989	T	C	0.00044		.	FALSE	AluSx3	SINE,Alu
chr5	147793406	A	G	0.00323	FBXO38	+	FALSE
chr2	128601583	T	C	0.00550		.	FALSE	AluJr	SINE,Alu
chr1	10519064	T	C	0.00012		.	FALSE	AluSx3	SINE,Alu
chr1	204524357	A	G	0.00568	MDM4	+	TRUE	AluY	SINE,Alu
chr2	61277798	A	G	0.00077	PEX13	+	TRUE	AluY	SINE,Alu
chr1	27205214	T	C	0.00048		.	FALSE	AluSc	SINE,Alu
chr2	207027628	A	G	0.00022	EEF1B2	+	FALSE
chr1	163309219	A	T	0.00023	NUF2	+	FALSE
chr1	180859304	T	C	2.77658E-06	XPR1	+	FALSE
chr3	183476685	G	A	0.00032	YEATS2	+	FALSE
chr3	10192596	A	G	7.92003E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr17	60522252	G	A	0.00187	METTL2A	+	FALSE
chr12	10311410	A	G	0.00909	OLR1	-	FALSE
chr21	44836048	G	A	0.00542	LOC102724428,SIK1	-	FALSE
chr5	69497703	G	A	0.00557	SMA4	-	FALSE
chr3	9829171	G	A	0.00730	TADA3	-	FALSE
chr1	1594315	C	T	0.00347	CDK11B,SLC35E2B	-	FALSE
chr1	117910682	G	A	0.00013	MAN1A2	+	FALSE
chr1	153907287	G	C	0.00159	DENND4B	-	FALSE	(CTG)n	SINE,Alu
chrX	54587196	A	G	0.00392	GNL3L	+	TRUE	AluSq2	SINE,Alu
chr3	15115270	G	T	0.00177	RBSN	-	FALSE
chr9	131094270	A	G	0.00686	COQ4	+	TRUE	AluSx	SINE,Alu
chr1	10520154	T	C	0.00018		.	FALSE	AluSx	SINE,Alu
chr1	226333560	A	T	0.00339	ACBD3	-	FALSE	(CAAAA)n	SINE,Alu
chr2	172179003	T	C	0.00192	METTL8	-	TRUE	AluY	SINE,Alu
chr1	27662666	A	G	0.00799	TMEM222	+	FALSE
chr2	87820785	C	T	0.00110	LINC00152	+	FALSE
chr1	223178477	C	T	0.00519	DISP1	+	FALSE
chr1	9162243	T	C	0.00031		.	FALSE	AluSx	SINE,Alu
chr8	27592828	G	A	0.00133	CCDC25	-	FALSE
chr13	47325380	G	A	0.00270	LRCH1	+	FALSE
chr2	191069434	G	A	0.00680	HIBCH	-	FALSE
chr1	153533813	A	T	0.00451	S100A2	-	FALSE
chr2	55459824	C	T	0.00763	RPS27A	+	FALSE
chr1	45976723	T	C	0.00366	MMACHC,PRDX1	+,-	FALSE
chr1	10519119	T	C	0.00892		.	FALSE	AluSx3	SINE,Alu
chr17	17425631	C	T	0.00036	PEMT	-	FALSE
chr2	85547772	G	C	0.00871	TGOLN2	-	FALSE
chr2	47399601	A	G	0.00102	CALM2	-	FALSE
chr1	39470995	A	C	0.00036	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr17	73939212	T	C	0.00376	ACOX1	-	TRUE	AluSx1	SINE,Alu
chr1	60340527	G	A	0.00027	HOOK1	+	FALSE
chr1	109465167	T	A	0.00233	GPSM2	+	FALSE
chr1	65147002	C	T	6.62669E-07	CACHD1	+	FALSE
chr12	125511942	A	G	0.00015	THRIL	-	FALSE	AluSx1	SINE,Alu
chr21	33032035	T	A	1.90109E-05	SOD1	+	FALSE
chr8	141461185	A	G	0.00793	TRAPPC9	-	FALSE
chr1	40145850	G	C	0.00035	HPCAL4	-	FALSE
chr5	134236206	A	G	0.00065	TXNDC15	+	TRUE	AluSq	SINE,Alu
chr1	28826150	A	G	0.00048	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr4	2940265	T	C	4.71601E-06	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	10521254	T	C	0.00522	DFFA	-	TRUE	AluY	SINE,Alu
chr12	131356731	T	C	2.96756E-07	RAN	+	FALSE	(GGCCGG)n	SINE,Alu
chr14	23794554	G	A	0.00966	BCL2L2-PABPN1,PABPN1	+	FALSE	A-rich	SINE,Alu
chr1	154987526	C	T	0.00043	ZBTB7B	+	FALSE
chr1	19542310	T	C	0.00112	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	172411496	A	G	0.00361	C1orf105,PIGC	+,-	FALSE
chr1	10521200	T	C	0.00096	DFFA	-	TRUE	AluY	SINE,Alu
chr1	9162932	A	T	0.00635		.	FALSE
chr1	45226084	G	A	0.00970	KIF2C	+	FALSE
chr1	40537947	A	C	0.00295	CAP1	+	FALSE
chr1	900505	G	C	0.00583	KLHL17	+	FALSE
chr2	189159003	G	A	0.00260	GULP1	+	FALSE
chr1	1459332	G	A	1.33172E-08	ATAD3A	+	FALSE
chr1	33086812	T	C	0.00812		.	FALSE	AluY	SINE,Alu
chr1	28825415	A	G	1.13446E-06	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr2	91805938	A	G	0.00084		.	FALSE	MLT1H1	SINE,Alu
chr9	115446725	T	C	0.00037	INIP	-	TRUE	AluJr	SINE,Alu
chr1	16912029	C	G	0.00831	NBPF1	-	FALSE
chr1	6282371	T	C	0.00013	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	148595665	A	G	0.00141	NBPF15	+	TRUE	L1MC4	SINE,Alu
chr1	10520378	T	C	8.57705E-06		.	FALSE	AluSx1	SINE,Alu
chr15	91044378	C	T	0.00453	IQGAP1	+	FALSE
chr14	64152516	T	C	0.00011	SGPP1	-	FALSE	(TA)n	SINE,Alu
chr19	4423352	G	A	0.00087	CHAF1A	+	FALSE	GA-rich	SINE,Alu
chr1	59249682	G	A	0.00074	JUN	-	FALSE
chr2	109401283	C	T	0.00039	RANBP2	+	FALSE
chr1	33149496	A	G	0.00308	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	19981865	A	G	0.00213	MINOS1-NBL1,NBL1	+	FALSE
chr4	4291832	A	T	6.49020E-08	LYAR	-	FALSE
chr1	6583457	T	C	9.96562E-05	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	61922059	C	A	0.00132	NFIA	+	FALSE	(A)n	SINE,Alu
chr1	151092875	A	G	0.00154	GABPB2	+	TRUE	AluSp	SINE,Alu
chr7	44918804	T	C	0.00015	PURB	-	TRUE	AluSg	SINE,Alu
chr5	37291508	T	C	0.00430		.	FALSE	AluSx3	SINE,Alu
chr1	114307293	A	G	0.00499	RSBN1	-	FALSE
chr1	144930940	T	C	0.00181	NBPF20,PDE4DIP	+,-	FALSE
chr1	16890672	G	A	0.00142	NBPF1	-	FALSE
chr4	39550739	T	C	0.00231	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr3	196080531	T	C	0.00952	UBXN7	-	TRUE	AluSx	SINE,Alu
chr1	148561089	T	C	0.00975	NBPF15	+	FALSE
chr1	32801724	T	G	0.00816	MARCKSL1	-	FALSE
chr2	36776053	T	C	0.00029	CRIM1	+	FALSE
chr1	148932848	A	G	0.00496	LOC645166	+	FALSE
chr1	101372409	T	C	0.00203	SLC30A7	+	FALSE
chr16	10623525	T	C	8.96209E-06	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	16892277	G	T	0.00021	NBPF1	-	FALSE
chr1	28826150	A	G	0.00052	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	185014720	A	G	0.00989	RNF2	+	FALSE
chr1	33148740	A	G	0.00210	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr5	79923843	T	C	0.00363	DHFR	-	TRUE	AluSp	SINE,Alu
chr1	1662694	T	C	0.00398	SLC35E2	-	TRUE	AluY	SINE,Alu
chr1	32374019	G	A	0.00297	PTP4A2	-	FALSE
chr1	209605643	A	C	0.00590	MIR205HG	+	FALSE	(AGC)n	SINE,Alu
chr1	154557184	G	A	0.00558	ADAR	-	FALSE	A-rich	SINE,Alu
chr1	19586520	A	G	0.00305	MRTO4	+	TRUE	AluSz	SINE,Alu
chr3	169490779	G	A	0.00147		.	FALSE
chr1	152552285	C	A	0.00400	LCE3D	-	FALSE
chr8	143739343	T	C	0.00999	JRK	-	FALSE
chr3	129033736	T	C	0.00309	H1FX	-	FALSE
chr1	179811936	T	C	0.00229	TOR1AIP2	-	FALSE	AluY	SINE,Alu
chr5	72801329	T	A	0.00073	BTF3	+	FALSE
chr1	54691905	C	G	0.00611	SSBP3	-	FALSE
chr1	234744480	G	A	0.00409	IRF2BP2	-	FALSE
chr6	150046495	T	C	0.00076	NUP43	-	TRUE	AluSq2	SINE,Alu
chr12	96661613	A	G	0.00183	ELK3	+	FALSE
chr4	17803009	T	C	0.00062	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	31902343	T	C	1.48709E-05	SERINC2	+	FALSE
chr7	6505901	T	C	1.53488E-09	KDELR2	-	FALSE
chr8	48890114	A	G	2.61683E-11	MCM4	+	TRUE	AluJb	SINE,Alu
chr6	13790888	T	C	0.00442	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr1	78483452	C	T	0.00045	DNAJB4	+	FALSE	L1MB7	SINE,Alu
chr1	35319550	C	T	0.00781	SMIM12	-	FALSE	AluSg	SINE,Alu
chr1	25812110	T	C	0.00639	TMEM57	+	FALSE
chr2	234385276	T	C	0.00951	USP40	-	FALSE
chr2	9629304	A	G	0.00121	ADAM17	-	FALSE
chr6	34254565	A	T	0.00617		.	FALSE	(A)n	SINE,Alu
chr1	55207984	T	A	0.00099	MROH7-TTC4,TTC4	+	FALSE
chr4	57327022	A	G	0.00057	PAICS	+	TRUE	AluSx1	SINE,Alu
chr3	160969268	C	T	0.00835	NMD3	+	FALSE
chr3	12641718	G	A	0.00091	RAF1	-	FALSE
chr2	128952699	A	G	0.00497	UGGT1	+	TRUE	AluSp	SINE,Alu
chr1	210004199	C	G	0.00531	DIEXF	+	FALSE
chr16	10623544	T	C	2.29348E-06	EMP2	-	TRUE	AluSp	SINE,Alu
chr5	37290323	T	C	0.00029		.	FALSE	AluSz	SINE,Alu
chr1	27203728	A	T	0.00528		.	FALSE
chr12	123253711	A	G	0.00066	DENR	+	TRUE	(AT)n	SINE,Alu
chr15	41591418	A	G	6.38388E-06	OIP5-AS1	+	TRUE	AluSx	SINE,Alu
chr1	10517953	T	A	0.00535		.	FALSE
chr3	52109841	T	C	7.35943E-05	POC1A	-	FALSE
chr4	2940397	T	C	0.00010	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr3	194361676	C	T	0.00378	LSG1	-	FALSE	MSTA	SINE,Alu
chr15	65442506	T	C	0.00088	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	206516261	C	T	0.00179	SRGAP2	+	FALSE
chr5	151041883	G	A	0.00343	SPARC	-	FALSE
chr2	242122440	C	A	0.00354	PPP1R7	+	FALSE
chr1	16841620	T	A	0.00023		.	FALSE
chr7	193091	C	T	1.15297E-06	FAM20C	+	FALSE
chr2	175711942	C	T	8.43847E-05	CHN1	-	FALSE
chr1	85785557	T	A	0.00141	DDAH1	-	FALSE
chr1	46075604	A	G	0.00155	NASP	+	TRUE	AluSx4	SINE,Alu
chr2	219134117	C	T	0.00357	AAMP	-	FALSE
chr1	146650542	A	G	0.00172	PDIA3P1	+	FALSE
chr1	203277253	A	G	0.00624	BTG2	+	FALSE
chr1	52498139	A	G	0.00193	TXNDC12,KTI12	-	FALSE
chr1	40537940	A	C	0.00155	CAP1	+	FALSE	(A)n	SINE,Alu
chr3	56703746	A	C	0.00017	FAM208A	-	FALSE
chr9	132268440	A	G	3.40625E-05	LINC00963	+	TRUE	AluJb	SINE,Alu
chr16	10623553	T	C	0.00024	EMP2	-	TRUE	AluSp	SINE,Alu
chr5	72801321	T	A	0.00427	BTF3	+	FALSE
chr1	33148196	A	G	0.00756	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr4	7762356	G	A	3.36293E-10	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	155161736	G	A	0.00088	MUC1	-	FALSE
chr2	113287424	T	A	0.00616	TTL	+	FALSE
chr2	217001882	T	C	0.00996	XRCC5	+	FALSE
chr1	28661736	A	G	0.00048	MED18	+	TRUE	AluSg	SINE,Alu
chr1	25894463	G	A	0.00596	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr2	38971040	G	T	0.00651	SRSF7	-	FALSE
chr1	145293566	G	A	0.00103	NBPF20,NBPF10	+	FALSE
chr7	100860467	C	G	0.00267	PLOD3	-	FALSE
chr1	145281543	C	T	0.00028	NBPF20,NOTCH2NL	+	FALSE
chr7	2278515	T	C	0.00937	MRM2	-	TRUE	AluSx1	SINE,Alu
chr2	217366821	A	G	0.00510		.	FALSE	AluSz6	SINE,Alu
chr19	2917287	C	A	0.00243	ZNF57	+	FALSE
chr3	15113810	T	C	0.00201	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	6684049	G	A	5.41898E-05	PHF13	+	FALSE
chr2	131129926	G	T	0.00034	PTPN18	+	FALSE
chr1	114306372	A	G	0.00243	RSBN1	-	FALSE
chr1	19585903	G	A	0.00575	MRTO4	+	FALSE	AluJr	SINE,Alu
chr1	10520984	G	T	0.00305	DFFA	-	FALSE	AluY	SINE,Alu
chr1	1595078	T	C	0.00714	CDK11B,SLC35E2B	-	FALSE	AluSg	SINE,Alu
chr3	50327662	G	A	0.00707	IFRD2	-	FALSE
chr4	761850	T	C	0.00026	PCGF3	+	FALSE
chr16	74734743	G	C	0.00436	MLKL	-	FALSE
chr1	10520331	C	T	0.00816		.	FALSE	AluSx1	SINE,Alu
chr1	10240685	C	T	0.00422	UBE4B	+	FALSE
chr11	65065373	A	G	0.00487	POLA2	+	TRUE	AluY	SINE,Alu
chr1	26801736	A	T	0.00578	HMGN2	+	FALSE	(T)n	SINE,Alu
chr2	63272724	T	C	0.00210	EHBP1,LOC100132215	+,-	FALSE
chr3	196079691	T	C	0.00507		.	FALSE	AluSc	SINE,Alu
chr17	79674375	C	T	0.00129	MRPL12	+	FALSE
chr22	22050366	T	C	0.00449	PPIL2	+	FALSE	MER5A	SINE,Alu
chr1	145511983	A	G	0.00596	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr7	44053729	T	C	0.00316	POLR2J4	-	FALSE	AluSg	SINE,Alu
chr2	99812398	A	G	0.00019	MRPL30	+	TRUE	AluSx	SINE,Alu
chr20	35520223	T	C	0.00111	TLDC2	+	FALSE	AluSx3	SINE,Alu
chrM	8859	G	A	0.00929		.	FALSE
chr3	141012493	C	A	0.00249	PXYLP1	+	FALSE	MER58A	SINE,Alu
chr1	1595586	T	C	0.00108	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr17	43364293	C	G	0.00144	MAP3K14	-	FALSE
chr2	73460315	C	T	0.00315	PRADC1	-	FALSE	(CGGCGC)n	SINE,Alu
chr12	88454641	A	T	0.00753	CEP290	-	FALSE
chr7	20178420	T	C	0.00053	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr19	11257634	T	C	0.00237	SPC24	-	TRUE	AluSp	SINE,Alu
chr6	31110789	T	C	0.00798		.	FALSE
chr1	145283986	C	T	0.00814	NBPF20,NOTCH2NL	+	FALSE
chr1	155161704	G	C	0.00034	MUC1	-	FALSE
chr6	42855057	A	G	0.00034	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	6659505	G	A	0.00017	KLHL21	-	FALSE
chr1	110912873	T	C	0.00116	SLC16A4	-	FALSE
chr1	177976440	C	T	0.00148	LOC730102	-	FALSE
chr1	33148706	A	G	0.00038	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	54354935	G	C	0.00831	YIPF1	-	FALSE
chr1	114306369	A	T	0.00341	RSBN1	-	FALSE
chr19	39982631	A	G	0.00316	TIMM50	+	TRUE	AluJr	SINE,Alu
chr2	204162601	A	G	0.00032	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr1	144874760	T	C	0.00267	NBPF20,PDE4DIP	+,-	FALSE
chr3	10322521	T	C	0.00531	TATDN2	+	FALSE
chr4	187628395	T	A	0.00000	FAT1	-	FALSE

RBP	TRUB1
Knock-Method	siRNA
RBP Family	TruB_N
Biosample Name	HEK293
Tissue Type	Kidney
Biosample Type	Cell line
# of Control	2
# of Treat	3
Species	Human
Data Source	GEO
Profile ID	GSE90851
Platform	GPL16791
Pubmed ID	N.A.

TRUB1 - Target Gene Network