Dataset Overview
RBP
TRUB1
Knock-Method
siRNA
RBP Family
TruB_N
Biosample Name
HEK293
Tissue Type
Kidney
Biosample Type
Cell line
# of Control
2
# of Treat
3
Species
Human
Data Source
GEO
Profile ID
GSE90851
Platform
GPL16791
Pubmed ID
N.A.
TRUB1 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of TRUB1
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
AAK1
8.4
14.78
0.84808
0.00086
0.02991
AARS
81.84
57.52
-0.44943
0.02494
0.20672
ABCA17P
0.81
0.63
1.59395
0.03726
0.25481
ABCA2
51.92
38.73
-0.47657
0.01858
0.17812
ABCA3
17.53
10.78
-0.59976
0.00633
0.09763
ABCA7
12.27
10.38
-0.63573
0.00386
0.07290
ABCB6
11.02
5.97
-0.77842
0.00104
0.03421
ABCC10
12.89
8.94
-0.52186
0.02177
0.19326
ABCC5
15.33
12.53
-0.51415
0.01260
0.14206
ABHD14B
49.62
27.11
-0.83889
0.00048
0.02049
Showing 1 to 10 of 2,554 entries
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Function Analysis of Target Genes of TRUB1
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AATK
79139481_79139614_79108167_79108301_79139737_79139877
0.00339
-0.333
DataSet_02_81
View details
ABCD3
94924162_94924199_94884010_94884144_94930330_94930429
0.00608
0.283
DataSet_02_81
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ABCF1
30545185_30545232_30539152_30539337_30545594_30545690
0.00416
0.147
DataSet_02_81
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ABHD14B
52005475_52005908_52003958_52004200_52007980_52008047
0.00633
0.425
DataSet_02_81
View details
AC005670.2
45012394_45012535_45009432_45009565_45015964_45016070
0.00829
0.32
DataSet_02_81
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AC023509.1
53858543_53858636_53856276_53856351_53861004_53861312
0.00000
-0.575
DataSet_02_81
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AC068152.1
45131483_45131579_45110643_45110747_45133825_45134119
0.00005
-0.407
DataSet_02_81
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AC069544.2
14884132_14884845_14882073_14882156_14885369_14886726
0.00937
0.246
DataSet_02_81
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AC087632.1
64673156_64673237_64668941_64669104_64673524_64673615
0.00122
0.369
DataSet_02_81
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AC211429.1
75113474_75113533_75104327_75104454_75115140_75115385
0.00035
0.182
DataSet_02_81
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Showing 1 to 10 of 271 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC087632.1
64668941_64669104_64673156_64673237_64592517_64592922
0.00253
0.333
DataSet_02_81
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ARFGAP2
47196732_47196864_47197401_47197474_47193831_47193884
0.00270
-0.367
DataSet_02_81
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CPSF4
99047898_99047994_99048324_99048418_99045743_99045896
0.00011
0.525
DataSet_02_81
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H2AFY
134686512_134686603_134688635_134688735_134681657_134681747
0.00070
-0.334
DataSet_02_81
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HMGN1
40717755_40717884_40719304_40719409_40717071_40717200
0.00507
-0.124
DataSet_02_81
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RELA
65429157_65429306_65429407_65429559_65427594_65427686
0.00036
0.461
DataSet_02_81
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SLC35B2
44224078_44224233_44224421_44224615_44221832_44223381
0.00006
-0.417
DataSet_02_81
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TEX264
51708286_51708578_51718428_51718650_51705190_51705304
0.00097
0.214
DataSet_02_81
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UBE2C
44443022_44443109_44444028_44444179_44442075_44442103
0.00406
-0.123
DataSet_02_81
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UBE2C
44444028_44444179_44444179_44444384_44442075_44442103
0.00159
0.354
DataSet_02_81
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ALDH18A1
97393247_97393406_97393253_97393406_97392715_97392806
0.00041
0.232
DataSet_02_81
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ARL6IP4
123465675_123465846_123465675_123465813_123466141_123466426
0.00386
0.343
DataSet_02_81
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ATP13A2
17331186_17331316_17331201_17331316_17330826_17330903
0.00001
-0.525
DataSet_02_81
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BCL9
147084681_147084998_147084681_147084776_147086225_147086415
0.00039
-0.206
DataSet_02_81
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BZW1
201676268_201676713_201676268_201676669_201677930_201678004
0.00000
-0.651
DataSet_02_81
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CD151
836250_836843_836250_836442_837249_837354
0.00013
-0.611
DataSet_02_81
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CHEK2
29126407_29126536_29126443_29126536_29121230_29121355
0.00345
0.166
DataSet_02_81
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CHTF18
840524_842367_840524_842347_842438_842590
0.00000
-0.725
DataSet_02_81
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CIZ1
130931330_130931480_130931354_130931480_130929373_130929443
0.00005
0.46
DataSet_02_81
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CKB
103986805_103986929_103986838_103986929_103986458_103986648
0.00198
-0.172
DataSet_02_81
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Showing 1 to 10 of 45 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC020915.1
58823531_58823828_58823562_58823828_58817453_58817582
0.00000
0.646
DataSet_02_81
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AC024592.3
5896463_5896661_5896463_5896586_5896915_5897008
0.00362
-0.158
DataSet_02_81
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ADA
43251469_43251719_43251469_43251571_43252842_43252970
0.00228
-0.13
DataSet_02_81
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ALG13
110925359_110925522_110925463_110925522_110924397_110924652
0.00750
-0.103
DataSet_02_81
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APRT
88875876_88876248_88875876_88876114_88876477_88876556
0.00254
0.184
DataSet_02_81
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ATP5A1
43675018_43675113_43675018_43675097_43678137_43678262
0.00008
-0.513
DataSet_02_81
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ATP5G3
176046082_176046211_176046082_176046194_176046383_176046438
0.00581
0.142
DataSet_02_81
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B4GALNT4
380670_380951_380824_380951_380291_380445
0.00006
0.399
DataSet_02_81
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B4GALT3
161145597_161145885_161145597_161145683_161146223_161146369
0.00000
0.667
DataSet_02_81
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B4GALT7
177034283_177034528_177034302_177034528_177031179_177031542
0.00070
0.501
DataSet_02_81
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACADVL
7123440_7123995_7123440_7123516_7123922_7123995
0.00876
0.22
DataSet_02_81
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ATXN2L
28847253_28847806_28847253_28847443_28847769_28847806
0.00271
-0.113
DataSet_02_81
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BAP1
52440268_52440923_52440268_52440392_52440844_52440923
0.00460
-0.076
DataSet_02_81
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BCAM
45322838_45324079_45322838_45322983_45323961_45324079
0.00379
-0.447
DataSet_02_81
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C11orf49
47182677_47183798_47182677_47182741_47182996_47183798
0.00371
-0.311
DataSet_02_81
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C1orf35
228289780_228290083_228289780_228289866_228290010_228290083
0.00231
0.351
DataSet_02_81
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CENPV
16251929_16252647_16251929_16251999_16252453_16252647
0.00641
-0.274
DataSet_02_81
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CRTC2
153927348_153927642_153927348_153927465_153927540_153927642
0.00847
-0.101
DataSet_02_81
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DRG2
18002330_18003749_18002330_18002407_18002946_18003749
0.00034
0.367
DataSet_02_81
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DUS1L
80016216_80016694_80016216_80016292_80016656_80016694
0.00318
0.619
DataSet_02_81
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
9163402
T
C
4.95479E-05
.
FALSE
AluSp
SINE,Alu
chr1
32742441
G
A
2.83845E-11
LCK
+
FALSE
chr1
10520174
T
C
0.00163
.
FALSE
AluSx
SINE,Alu
chr1
15989141
C
G
0.00364
.
FALSE
chr1
6583593
T
C
0.00088
NOL9
-
TRUE
AluSq
SINE,Alu
chr1
108742130
T
C
1.29742E-06
SLC25A24
-
FALSE
chr1
78414285
T
A
0.00179
FUBP1
-
FALSE
chr1
211918115
C
T
7.42155E-06
LPGAT1
-
FALSE
MER63D
SINE,Alu
chr1
327441
A
G
1.08612E-09
.
FALSE
chr1
10519064
T
C
0.00012
.
FALSE
AluSx3
SINE,Alu
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression