RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	144053567	C	T	0.00353		.	FALSE
chr19	58357268	A	G	0.00099	ZNF587B	+	TRUE	AluSx3	SINE,Alu
chr1	207942509	A	G	0.00177	CD46	+	TRUE	AluSg4	SINE,Alu
chr9	136209399	A	T	0.00011	MED22	-	FALSE
chr5	85916592	G	A	0.00018		.	FALSE
chr17	53470462	C	T	0.00230	MMD	-	FALSE
chr1	46828657	C	T	0.00378	NSUN4	+	FALSE
chr1	74672474	G	A	0.00150	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chr2	224622277	T	C	0.00138	AP1S3	-	TRUE	AluSx1	SINE,Alu
chr12	98943162	A	G	5.01524E-05	TMPO	+	TRUE	AluSz	SINE,Alu
chr5	79923912	T	C	0.00037	DHFR	-	TRUE	AluSp	SINE,Alu
chr5	31554465	A	T	1.69098E-06	C5orf22	+	FALSE
chr2	209113192	G	A	0.00610	IDH1	-	FALSE
chr1	111489903	A	C	0.00666	LRIF1	-	FALSE
chr6	72012435	A	G	0.00723	OGFRL1	+	FALSE	AluSg	SINE,Alu
chr1	154321623	G	A	0.00782	ATP8B2	+	FALSE
chr2	30864980	A	G	7.96700E-05	LCLAT1	+	FALSE
chr3	182639121	A	G	0.00048	ATP11B	+	FALSE
chr1	145689566	A	G	0.00331	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	28826130	A	G	0.00207	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr4	39551087	T	C	0.00263	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr3	156258283	T	C	0.00686	SSR3	-	TRUE	AluYk3	SINE,Alu
chr15	83659311	C	T	0.00858	FAM103A1,C15orf40	+,-	FALSE
chr1	25570566	C	G	0.00326	RSRP1	-	FALSE	Alu	SINE,Alu
chr1	16891333	C	T	0.00281	NBPF1	-	FALSE
chr5	49692633	T	G	0.00808	EMB	-	FALSE
chr5	41919747	C	T	0.00814	C5orf51	+	FALSE	L2c	SINE,Alu
chr8	144684474	T	C	0.00058		.	FALSE
chr1	28825486	A	G	0.00049	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	95658346	T	A	0.00961	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr11	93466866	G	T	0.00559	MIR1304	-	FALSE	AluJr	SINE,Alu
chr20	35521049	G	A	0.00711	TLDC2,SAMHD1	+,-	FALSE
chr3	38566722	T	C	0.00426	EXOG	+	FALSE	MIRb	SINE,Alu
chr1	91486838	G	C	0.00370	ZNF644	-	FALSE
chr5	52393421	C	T	0.00144	MOCS2	-	FALSE	L1MA9	SINE,Alu
chr1	10517653	T	C	0.00038		.	FALSE	AluSx1	SINE,Alu
chr5	37290571	T	C	0.00097		.	FALSE	AluSz	SINE,Alu
chr17	57279323	A	G	0.00159	PRR11	+	TRUE	AluSq2	SINE,Alu
chr8	30643553	A	G	0.00968	PPP2CB	-	FALSE
chr1	52991638	C	T	0.00125	ZCCHC11	-	FALSE
chr1	89649522	T	C	0.00358	GBP4	-	TRUE	AluJb	SINE,Alu
chr1	214529320	T	G	0.00365	PTPN14	-	FALSE	AluJb	SINE,Alu
chr1	207247477	T	C	0.00078	PFKFB2	+	FALSE	MER5B	SINE,Alu
chr1	89479063	G	A	0.00151	GBP3	-	FALSE
chr6	57034841	G	T	0.00581	ZNF451,LOC101927211	+,-	FALSE
chr3	47386059	T	C	9.15846E-06	KLHL18	+	FALSE
chr1	113212976	C	T	0.00332	CAPZA1	+	FALSE
chr12	121772025	T	C	0.00562	ANAPC5	-	TRUE	AluJr	SINE,Alu
chr1	168214098	T	G	0.00134		.	FALSE
chr1	109475427	T	C	0.00185	GPSM2,CLCC1	+,-	FALSE
chr4	1193026	A	G	0.00471	SPON2,LOC100130872	-	FALSE	AluSp	SINE,Alu
chr1	10043053	A	G	0.00042	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr14	50792961	G	A	0.00547		.	FALSE	AluSx	SINE,Alu
chr1	16932428	C	G	0.00197	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr9	131872853	C	G	0.00108	CRAT	-	FALSE
chr1	225707043	T	C	2.18813E-07	ENAH	-	FALSE
chr20	18468404	T	C	0.00301	RBBP9	-	TRUE	AluSz6	SINE,Alu
chr6	24720533	C	G	0.00023		.	FALSE
chr2	206480819	C	T	0.00663	PARD3B	+	FALSE
chr16	81064543	A	G	0.00066	CENPN	+	TRUE	AluSg	SINE,Alu
chr3	195678003	C	G	0.00146		.	FALSE	L4_A_Mam	SINE,Alu
chr1	70696395	A	T	0.00364	SRSF11	+	FALSE
chr1	92862836	A	G	0.00430		.	FALSE	AluJr	SINE,Alu
chr3	12641718	G	A	0.00091	RAF1	-	FALSE
chr1	19586455	A	G	0.00772	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	67874689	T	C	0.00896	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr3	128215735	G	A	0.00734	GATA2-AS1	+	FALSE
chr6	44222157	G	A	0.00856	SLC35B2	-	FALSE
chr1	28662253	A	G	0.00187	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	36067760	T	C	1.59237E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr19	30192475	G	A	0.00575	C19orf12	-	FALSE	MER2	SINE,Alu
chr2	206986314	T	C	0.00936		.	FALSE	AluSz	SINE,Alu
chr1	109475629	A	G	0.00315	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr11	34379275	T	C	0.00994	ABTB2	-	FALSE
chr12	44181367	G	A	0.00608	IRAK4	+	FALSE	MLT1E1A	SINE,Alu
chr5	40832551	A	T	0.00394	RPL37	-	FALSE
chr2	217366896	A	G	0.00457		.	FALSE	AluSz6	SINE,Alu
chr1	16929327	C	T	0.00315	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr1	1164179	G	A	0.00983	SDF4	-	FALSE	G-rich	SINE,Alu
chr1	31905886	C	A	0.00273	SERINC2	+	FALSE
chr1	145441841	A	T	0.00636	NBPF20,NBPF10,TXNIP	+	FALSE
chr19	58361328	G	C	0.00972	ZNF587	+	FALSE
chr3	156258319	T	C	0.00909	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	6282236	T	C	0.00388	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	115313028	T	A	0.00448	SIKE1	-	FALSE	AluSx1	SINE,Alu
chr1	27205044	T	C	0.00312		.	FALSE	AluSx	SINE,Alu
chr6	26411987	T	C	0.00405	BTN3A1	+	FALSE
chr2	9629290	T	G	0.00180	ADAM17	-	FALSE	(TGT)n	SINE,Alu
chr2	37331201	T	C	0.00291		.	FALSE	AluSx1	SINE,Alu
chr2	27995238	G	A	0.00345	MRPL33	+	FALSE
chr2	61154325	T	C	0.00706	REL	+	FALSE	L2b	SINE,Alu
chr2	240954005	C	A	0.00021	NDUFA10	-	FALSE
chr4	10076959	C	G	6.37978E-10	WDR1	-	FALSE
chr8	61534428	A	G	0.00274	RAB2A	+	FALSE
chr4	2940165	T	C	0.00201	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr3	44791062	T	C	0.00035	KIAA1143	-	FALSE
chr17	61502458	T	A	0.00317	TANC2	+	FALSE
chr10	22824831	C	T	0.00702	PIP4K2A	-	FALSE
chr1	87379498	T	G	0.00784	SEP15	-	FALSE
chr19	46052996	T	C	2.38036E-05	OPA3	-	TRUE	AluSz6	SINE,Alu
chr1	223178477	C	T	0.00519	DISP1	+	FALSE
chr9	115447535	T	C	3.15593E-07	INIP	-	TRUE	AluJb	SINE,Alu
chr5	34906692	T	C	0.00021	RAD1	-	TRUE	AluJo	SINE,Alu
chr14	19684445	A	G	0.00351	DUXAP10	+	FALSE
chr1	25889571	G	A	0.00344	LDLRAP1	+	FALSE
chr1	70718272	A	T	0.00166		.	FALSE
chr1	16933631	G	A	0.00442	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr5	115166350	T	C	0.00148	ATG12	-	TRUE	AluJr	SINE,Alu
chr4	56295166	A	G	0.00988	CLOCK	-	FALSE
chr14	23794554	G	A	0.00966	BCL2L2-PABPN1,PABPN1	+	FALSE	A-rich	SINE,Alu
chr2	37330144	T	G	0.00478		.	FALSE
chr2	25962253	A	T	0.00784	ASXL2	-	FALSE
chr2	176790393	C	T	0.00282	LNPK	-	FALSE	AluSp	SINE,Alu
chr1	1419746	A	G	0.00016	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	184761365	A	G	0.00758	FAM129A	-	FALSE	AluJo	SINE,Alu
chr1	7980667	T	C	0.00584	TNFRSF9	-	TRUE	AluJb	SINE,Alu
chr1	40537924	G	A	0.00476	CAP1	+	FALSE	(A)n	SINE,Alu
chr9	37503490	A	G	0.00612	POLR1E	+	TRUE	AluJb	SINE,Alu
chr1	36535560	A	G	0.00059		.	FALSE	AluSx1	SINE,Alu
chr1	38326728	T	C	0.00079	INPP5B	-	TRUE	AluJr	SINE,Alu
chr1	932005	A	G	0.00110		.	FALSE
chr1	36068052	G	T	1.69686E-12	PSMB2	-	FALSE	L1ME4b	SINE,Alu
chr10	75009585	T	C	2.45347E-10	DNAJC9-AS1,MRPS16	+,-	FALSE	AluSc	SINE,Alu
chr4	39550549	T	C	0.00014	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr3	181430146	C	A	0.00256	SOX2-OT,SOX2	+	FALSE
chr1	19984104	A	C	0.00638	MINOS1-NBL1,NBL1	+	FALSE
chr9	137330709	G	T	0.00965	RXRA	+	FALSE	(GCTG)n	SINE,Alu
chr1	33409693	G	A	0.00722	RNF19B	-	FALSE
chr9	21863618	T	C	0.00148	MTAP	+	FALSE	AluY	SINE,Alu
chr1	143464946	T	C	0.00109		.	FALSE
chr1	21793735	C	G	0.00405	NBPF3	+	FALSE
chr1	36529419	A	G	0.00842		.	FALSE	AluJr	SINE,Alu
chr1	26450101	A	G	0.00764	PDIK1L	+	FALSE
chr1	53291425	A	G	0.00034	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	179044174	A	G	0.00410	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	6282420	T	C	0.00779	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	108113839	T	C	0.00062	VAV3	-	FALSE
chr2	227659846	T	G	0.00653	IRS1	-	FALSE	G-rich	SINE,Alu
chr7	38764395	T	C	0.00139	VPS41	-	TRUE	AluSp	SINE,Alu
chr1	569492	T	C	0.00336		.	FALSE
chr1	153917621	G	C	0.00020	DENND4B	-	FALSE
chr1	788840	T	C	0.00415	LINC01128	+	FALSE
chr19	19459215	C	T	0.00068	MAU2	+	FALSE
chr1	16889413	T	C	0.00016	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr15	74319121	A	G	0.00311	PML	+	TRUE	AluSz6	SINE,Alu
chr4	128757415	A	G	0.00367		.	FALSE	AluY	SINE,Alu
chr1	36067677	T	C	1.65353E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	100548780	A	T	0.00791	MFSD14A	+	FALSE
chr1	16905869	G	A	0.00027	NBPF1	-	FALSE
chr1	51822219	G	A	0.00223	EPS15	-	FALSE
chr1	16529004	A	C	3.00007E-07	ARHGEF19	-	FALSE
chr1	119574537	G	A	0.00783	WARS2	-	FALSE
chr7	55433884	A	C	0.00271	LANCL2	+	FALSE
chr1	117644949	C	G	0.00862	TTF2	+	FALSE
chr12	7074517	C	T	0.00369	PHB2	-	FALSE
chr1	145513090	A	G	0.00017	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	111682307	G	C	5.71833E-05	DRAM2,CEPT1	+,-	FALSE
chr1	16889866	G	A	0.00051	NBPF1	-	FALSE
chr1	45244053	A	G	0.00621	RPS8	+	FALSE
chr2	37327590	T	C	0.00063		.	FALSE
chr1	205686523	G	T	2.43057E-05	NUCKS1	-	FALSE
chr4	56294560	A	G	0.00965	CLOCK	-	FALSE
chr6	100005419	A	G	2.18273E-06	CCNC	-	FALSE	AluSg	SINE,Alu
chr13	28240417	C	G	6.17934E-05	POLR1D	+	FALSE
chr1	53289940	A	G	0.00245	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	142688511	T	C	0.00089		.	FALSE
chr1	165877671	T	C	0.00376	UCK2	+	FALSE	(T)n	SINE,Alu
chr12	96259951	G	A	0.00328	SNRPF	+	FALSE
chr1	10502831	A	G	0.00193	APITD1,APITD1-CORT	+	FALSE
chr7	128143945	A	G	0.00607		.	FALSE	AluSq2	SINE,Alu
chr3	10192827	A	G	1.26958E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr3	172115476	A	G	0.00892	FNDC3B	+	FALSE	(A)n	SINE,Alu
chr7	100031496	T	A	0.00119	MEPCE	+	FALSE
chr1	179829425	T	C	1.55944E-05	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr1	1572530	A	C	0.00425	CDK11B	-	FALSE
chr5	180682604	A	T	0.00037	CTC-338M12.4	+	FALSE
chr6	54805688	A	C	0.00220	FAM83B	+	FALSE
chr1	120695202	C	A	0.00033		.	FALSE
chr3	149036714	G	A	0.00972	TM4SF18	-	FALSE
chr1	19984107	G	A	0.00963	MINOS1-NBL1,NBL1	+	FALSE
chr6	42854739	A	C	0.00671	RPL7L1	+	FALSE	AluSc	SINE,Alu
chr1	36642420	T	C	0.00162	MAP7D1	+	FALSE
chr1	144521102	T	A	0.00119	NBPF20	+	FALSE
chr2	85775237	T	C	6.42894E-05	GGCX	-	TRUE	AluSx4	SINE,Alu
chr4	101947014	G	C	0.00140	PPP3CA	-	FALSE
chr7	75145495	G	A	5.48132E-07	PMS2P3	-	FALSE
chr6	52365328	T	G	0.00983	TRAM2	-	FALSE	(T)n	SINE,Alu
chr1	63881552	C	T	0.00293	ALG6	+	FALSE
chr1	3730400	T	C	0.00584	CEP104	-	TRUE	AluSx3	SINE,Alu
chr5	139931631	G	C	0.00138	SRA1	-	FALSE
chr4	39551031	T	C	0.00068	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	203277244	A	G	0.00115	BTG2	+	FALSE
chr1	179326847	A	G	0.00021	SOAT1	+	TRUE	AluJo	SINE,Alu
chr2	128601426	T	C	0.00034		.	FALSE	AluJr	SINE,Alu
chr1	54871874	C	T	2.61533E-07	SSBP3	-	FALSE
chr1	26143731	A	G	0.00337	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	10043416	G	A	0.00052	NMNAT1	+	FALSE	AluSx3	SINE,Alu
chr1	62627128	A	G	0.00087	PATJ	+	TRUE	AluSx	SINE,Alu
chr12	27953266	G	T	0.00198	KLHL42	+	FALSE
chr1	148595665	A	G	0.00378	NBPF15	+	TRUE	L1MC4	SINE,Alu
chr1	40214333	A	G	0.00112	PPIE	+	TRUE	AluSq2	SINE,Alu
chr1	153907287	G	C	0.00122	DENND4B	-	FALSE	(CTG)n	SINE,Alu
chr3	57548976	A	G	0.00132	PDE12	+	TRUE	FRAM	SINE,Alu
chr2	9558812	G	T	0.00427	ITGB1BP1	-	FALSE
chr1	16945409	T	A	0.00290	CROCCP2	-	FALSE
chr1	78483452	C	T	0.00094	DNAJB4	+	FALSE	L1MB7	SINE,Alu
chr1	27212513	T	C	0.00260	GPN2	-	FALSE
chr1	13936953	C	T	0.00515	PDPN	+	FALSE

RBP	XRN1
Knock-Method	siRNA
RBP Family	XRN_N
Biosample Name	Hela
Tissue Type	Cervix
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	GEO
Profile ID	GSE115471
Platform	GPL18573
Pubmed ID	31855182

XRN1 - Target Gene Network