Dataset Overview
RBP
ZC3H3
Knock-Method
siRNA
RBP Family
zf-CCCH
Biosample Name
Hela
Tissue Type
Cervix
Biosample Type
Cell line
# of Control
3
# of Treat
3
Species
Human
Data Source
GEO
Profile ID
GSE131255
Platform
GPL20301
Pubmed ID
31950173
ZC3H3 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of ZC3H3
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A2M
9.87
2.45
-2.96443
8.89133E-46
2.26301E-43
A2M-AS1
2.23
1.77
-0.46635
0.01336
0.03287
A4GALT
11.55
9.47
-0.33492
0.02813
0.06146
AAGAB
34.19
27.82
-0.41825
0.00021
0.00090
AAK1
3.61
5.04
0.65052
4.87962E-06
3.21349E-05
AAMDC
22.44
18.86
-0.37359
0.02373
0.05320
AARS
78.89
105.42
0.27424
0.01771
0.04158
AARS2
9.3
13.0
0.35990
0.00259
0.00813
AATF
27.16
45.29
0.60132
4.64958E-08
4.64080E-07
ABCA1
1.36
0.98
-0.60174
2.18050E-05
0.00012
Showing 1 to 10 of 6,891 entries
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Function Analysis of Target Genes of ZC3H3
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AARSD1
41103816_41103911_41102542_41102745_41106892_41106984
0.00096
-0.153
DataSet_02_86
View details
AARSD1
41114191_41114289_41113208_41113368_41116122_41116254
0.00001
-0.273
DataSet_02_86
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AARSD1
41114191_41114312_41113208_41113368_41116122_41116254
0.00000
-0.311
DataSet_02_86
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ABCA11P
431234_431300_419603_420762_466363_466490
0.00731
-0.229
DataSet_02_86
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ABHD14B
52005475_52005908_52003958_52004200_52007980_52008047
0.00001
0.4
DataSet_02_86
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ABHD18
128922870_128922915_128905493_128905578_128930074_128930153
0.00022
-0.288
DataSet_02_86
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ABLIM1
116233637_116233715_116232735_116232891_116247716_116247752
0.00376
0.237
DataSet_02_86
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AC005154.1
30624038_30624069_30618846_30618930_30624326_30624424
0.00000
0.463
DataSet_02_86
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AC005154.1
30624038_30624069_30618846_30618930_30624945_30625095
0.00191
0.379
DataSet_02_86
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AC008763.2
7695458_7695545_7694697_7694746_7695708_7695732
0.00003
0.017
DataSet_02_86
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Showing 1 to 10 of 1,562 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABHD18
128910875_128910976_128922870_128922915_128905493_128905578
0.00045
0.527
DataSet_02_86
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ABI1
27044583_27044670_27047990_27048164_27040526_27040712
0.00116
-0.385
DataSet_02_86
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ABI1
27044583_27044670_27047990_27048167_27040526_27040712
0.00044
-0.397
DataSet_02_86
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AC005154.1
30616179_30616326_30618621_30618744_30608448_30608605
0.00035
0.495
DataSet_02_86
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AC005154.1
30624038_30624069_30624326_30624424_30618846_30618930
0.00055
-0.298
DataSet_02_86
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AC087632.1
64658172_64658274_64668941_64669104_64592517_64592922
0.00000
-0.21
DataSet_02_86
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AC087632.1
64658184_64658274_64668941_64669104_64592517_64592922
0.00000
-0.228
DataSet_02_86
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AC087632.1
64668941_64669104_64673156_64673237_64658172_64658274
0.00819
0.054
DataSet_02_86
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ACAD8
134126981_134127151_134128408_134128518_134126441_134126542
0.00013
0.306
DataSet_02_86
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ADAM15
155033890_155033965_155034379_155034451_155033238_155033308
0.00181
0.537
DataSet_02_86
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Showing 1 to 10 of 132 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC009948.1
179291092_179291430_179291092_179291388_179295496_179295616
0.00335
-0.425
DataSet_02_86
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ACADVL
7127131_7127194_7127131_7127177_7127286_7127388
0.00000
-0.629
DataSet_02_86
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ACTR6
100599453_100599535_100599453_100599522_100601440_100601564
0.00005
-0.414
DataSet_02_86
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AKT2
40742163_40743998_40743875_40743998_40741796_40742011
0.00006
0.472
DataSet_02_86
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AL365277.1
39994687_39994836_39994726_39994836_39987951_39988177
0.00001
-0.522
DataSet_02_86
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ANXA1
75769113_75769258_75769113_75769256_75773437_75773517
0.00223
0.466
DataSet_02_86
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AP000347.1
24028976_24029182_24029024_24029182_24025930_24026054
0.00669
0.072
DataSet_02_86
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APTX
33001513_33001610_33001564_33001610_32989756_32989893
0.00891
0.265
DataSet_02_86
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ARHGAP11A
32921795_32921963_32921795_32921876_32925179_32925309
0.00042
-0.156
DataSet_02_86
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ARHGAP26
142586762_142587038_142586762_142586873_142593561_142593653
0.00574
0.496
DataSet_02_86
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Showing 1 to 10 of 224 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCF3
183905151_183905231_183905184_183905231_183904583_183904663
0.00000
-0.512
DataSet_02_86
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AC004241.1
48113382_48113482_48113387_48113482_48112929_48113055
0.00000
0.604
DataSet_02_86
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AC025171.2
43044494_43045370_43044800_43045370_43042234_43043669
0.00005
0.598
DataSet_02_86
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ACADVL
7127798_7127871_7127802_7127871_7127639_7127712
0.00020
-0.311
DataSet_02_86
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ACIN1
23533313_23533466_23533313_23533430_23533563_23533694
0.00095
0.34
DataSet_02_86
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ACOT8
44472165_44472411_44472165_44472360_44472901_44473059
0.00057
0.173
DataSet_02_86
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ACSL4
108926364_108926895_108926364_108926601_108939372_108939425
0.00486
0.022
DataSet_02_86
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AHCYL1
110554983_110555084_110555008_110555084_110553835_110553979
0.00101
0.254
DataSet_02_86
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AKT2
40741930_40742049_40741930_40742011_40742163_40742292
0.00048
-0.531
DataSet_02_86
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AKT2
40745951_40746028_40745951_40746017_40747844_40747976
0.00000
-0.453
DataSet_02_86
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Showing 1 to 10 of 258 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9220307_9220820_9220307_9220435_9220778_9220820
0.00712
-0.446
DataSet_02_86
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ABCF3
183904294_183904663_183904294_183904442_183904583_183904663
0.00002
-0.197
DataSet_02_86
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ABCF3
183905451_183905771_183905451_183905549_183905648_183905771
0.00150
-0.332
DataSet_02_86
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ABCF3
183907042_183907231_183907042_183907065_183907175_183907231
0.00003
0.3
DataSet_02_86
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AC026412.1
1599034_1599942_1599034_1599384_1599741_1599942
0.00759
-0.2
DataSet_02_86
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ACADVL
7123782_7123995_7123782_7123848_7123922_7123995
0.00627
-0.234
DataSet_02_86
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ACADVL
7127131_7127388_7127131_7127177_7127286_7127388
0.00000
-0.181
DataSet_02_86
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ACTB
5568791_5569294_5568791_5569031_5569165_5569294
0.00002
0.293
DataSet_02_86
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ACTG1
79478213_79478829_79478213_79478652_79478788_79478829
0.00336
0.155
DataSet_02_86
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ADA
43248939_43249788_43248939_43249042_43249658_43249788
0.00170
0.507
DataSet_02_86
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
183515428
G
A
0.00232
SMG7
+
FALSE
chr1
21810586
C
T
0.00540
NBPF3
+
FALSE
chr1
40537941
A
C
0.00216
CAP1
+
FALSE
(A)n
SINE,Alu
chr1
35650014
C
A
0.00012
SFPQ
-
FALSE
chr1
202984020
A
T
0.00842
TMEM183A,TMEM183B
+
FALSE
chr1
91486838
G
C
0.00370
ZNF644
-
FALSE
chr1
11783776
C
A
0.00039
.
FALSE
AluSq
SINE,Alu
chr1
110604747
G
A
0.00739
ALX3
-
FALSE
chr1
9162456
T
C
0.00043
.
FALSE
AluSx
SINE,Alu
chr1
77759578
A
G
0.00404
AK5
+
FALSE
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression