RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr9	137330714	A	C	0.00030	RXRA	+	FALSE
chr8	11172477	C	T	0.00805	MTMR9	+	FALSE
chr2	204298783	A	C	0.00179	RAPH1	-	FALSE	(AT)n	SINE,Alu
chr1	1650807	T	C	0.00096	CDK11B,CDK11A	-	FALSE
chr1	10518734	T	C	0.00143		.	FALSE	AluSx1	SINE,Alu
chr12	69237021	A	G	0.00229	MDM2	+	TRUE
chr1	28825805	G	A	0.00115	PHACTR4	+	FALSE	AluSp	SINE,Alu
chr1	9328120	A	G	1.75282E-05	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	21100862	C	A	0.00012	HP1BP3	-	FALSE	(AC)n	SINE,Alu
chr1	1595603	C	G	0.00017	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr1	9162932	A	T	0.00635		.	FALSE
chr1	118066459	A	G	0.00729	MAN1A2	+	FALSE
chr1	28825418	A	G	0.00046	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	6283306	T	C	0.00505	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	100440563	A	G	0.00732	SLC35A3	+	FALSE	AluJb	SINE,Alu
chr5	256514	G	C	0.00198	SDHA	+	FALSE
chr1	16933629	A	G	0.00299	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr7	100739267	G	A	0.00654		.	FALSE	AluSx	SINE,Alu
chr1	144828857	C	G	4.37583E-07	NBPF20,NBPF9	+	FALSE
chr3	10005392	T	C	8.76084E-06	EMC3	-	FALSE	AluSg7	SINE,Alu
chr4	17804785	T	C	0.00273	DCAF16	-	TRUE	AluSx	SINE,Alu
chr3	194998813	A	G	0.00572	ACAP2	-	FALSE	AluSx1	SINE,Alu
chr12	69159400	G	A	0.00173	SLC35E3	+	FALSE	(AT)n	SINE,Alu
chr4	52753346	A	G	0.00782	DCUN1D4	+	TRUE	AluSc	SINE,Alu
chr1	46075191	C	A	0.00056	NASP	+	FALSE	A-rich	SINE,Alu
chr15	85184830	T	C	0.00895	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr1	25570565	G	A	0.00244	RSRP1	-	FALSE	Alu	SINE,Alu
chr1	16909129	T	C	0.00131	NBPF1	-	FALSE
chr1	160967857	T	C	0.00806	F11R	-	TRUE	AluSp	SINE,Alu
chr1	53289940	A	G	0.00245	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	110136683	A	C	0.00183	GNAI3	+	FALSE
chr1	160966351	T	C	0.00023	F11R	-	TRUE	AluSg	SINE,Alu
chr3	52084040	C	T	4.81509E-06	DUSP7	-	FALSE
chr1	65898263	A	G	0.00767	LEPR,LEPROT	+	FALSE	MIRc	SINE,Alu
chr1	28836872	A	G	0.00019	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr5	53842079	C	T	0.00067	SNX18	+	FALSE
chr3	48894565	T	A	0.00142	SLC25A20	-	FALSE
chr1	19545142	A	G	0.00071	LOC101927895,EMC1	+,-	FALSE
chr3	45722396	A	G	0.00231	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	15905501	G	A	0.00359	AGMAT	-	FALSE
chr1	46016687	T	C	0.00296	AKR1A1	+	FALSE
chr1	52375564	T	C	0.00866	RAB3B	-	FALSE
chr6	108364582	T	C	0.00577	OSTM1	-	FALSE
chr3	183900836	G	A	2.54977E-05	AP2M1	+	FALSE
chr1	46032311	A	G	0.00362	AKR1A1	+	FALSE
chr1	26774225	A	G	0.00614	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr1	31351513	G	A	0.00265	SDC3	-	FALSE
chr12	123347005	T	A	0.00268	HIP1R	+	FALSE
chr5	149364144	A	G	0.00014	SLC26A2	+	TRUE	AluSc8	SINE,Alu
chr1	33148196	A	G	0.00054	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	119574537	G	A	0.00935	WARS2	-	FALSE
chr1	44088547	C	A	0.00018	PTPRF	+	FALSE	A-rich	SINE,Alu
chr1	26449340	G	A	0.00711	PDIK1L	+	FALSE
chr1	19542354	T	C	0.00684	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	45722396	A	G	0.00337	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr11	111431662	T	A	0.00204	LAYN	+	FALSE
chr4	73923605	T	C	0.00366	COX18	-	TRUE	AluSq2	SINE,Alu
chr10	79800437	T	A	0.00445	RPS24	+	FALSE
chr1	44438961	A	G	0.00013	DPH2	+	FALSE	MER3	SINE,Alu
chr1	160966352	T	C	3.14235E-07	F11R	-	TRUE	AluSg	SINE,Alu
chr1	109535088	G	A	0.00353	WDR47	-	FALSE
chr21	34728068	A	G	0.00188	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr2	37330172	T	G	0.00972		.	FALSE
chr1	36068243	T	C	0.00217	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	20449068	A	G	0.00014	PUM2	-	FALSE
chr2	3193040	G	A	0.00650	TSSC1	-	FALSE
chr1	28826085	A	G	0.00153	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	144618144	A	G	0.00725	NBPF20,NBPF9	+	FALSE
chr1	3730332	T	C	0.00025	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	9644847	A	G	0.00672		.	FALSE	AluJr	SINE,Alu
chr1	120539711	G	T	0.00627	NOTCH2	-	FALSE
chr1	168220489	A	G	0.00319		.	FALSE	AluSz6	SINE,Alu
chr4	88059663	G	T	0.00165	AFF1	+	FALSE	(GT)n	SINE,Alu
chr2	37328075	T	C	0.00335		.	FALSE
chr1	38174665	G	A	0.00475	CDCA8	+	FALSE
chr5	6633042	C	T	0.00377	NSUN2	-	FALSE
chr1	52498140	G	A	0.00044	TXNDC12,KTI12	-	FALSE
chr10	120920588	T	C	0.00304	SFXN4	-	FALSE
chr3	196658640	C	T	0.00444	SENP5	+	FALSE
chr1	16717888	G	A	0.00118	SZRD1	+	FALSE
chr2	229890660	A	G	0.00596	PID1	-	FALSE
chr1	114940228	C	T	0.00734	TRIM33	-	FALSE	(T)n	SINE,Alu
chr2	232576431	T	C	0.00593	PTMA	+	FALSE
chr1	3730400	T	C	0.00800	CEP104	-	TRUE	AluSx3	SINE,Alu
chr3	45721874	A	G	0.00314	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	145512073	A	G	0.00056	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr17	41133087	A	G	0.00141	RUNDC1	+	FALSE
chr1	8931947	T	C	0.00059	ENO1	-	FALSE
chr7	6501831	T	A	0.00110	KDELR2	-	FALSE
chr3	105266274	T	C	4.07026E-07	ALCAM	+	FALSE
chr3	44487862	G	A	0.00262	ZNF445	-	FALSE
chr2	99812447	A	G	0.00587	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	10519982	T	C	6.11297E-05		.	FALSE	AluJr	SINE,Alu
chr1	1344749	A	G	3.37361E-05		.	FALSE	AluSx1	SINE,Alu
chr1	9331101	A	G	5.45177E-05	H6PD	+	FALSE	AluSx	SINE,Alu
chr19	59093998	A	G	2.36787E-07	CENPBD1P1	+	TRUE	AluY	SINE,Alu
chr1	210416438	C	A	0.00085	SERTAD4	+	FALSE
chr1	3697486	C	G	0.00110	LRRC47	-	FALSE	AluSc	SINE,Alu
chr6	35259646	G	C	0.00808	ZNF76	+	FALSE
chr5	96366330	G	C	0.00251		.	FALSE	(TG)n	SINE,Alu
chr2	208619742	A	G	0.00500	CCNYL1	+	TRUE	AluJb	SINE,Alu
chr3	57126614	C	T	0.00358	IL17RD	-	FALSE	AluY	SINE,Alu
chr1	145689566	A	G	0.00331	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr2	86252038	T	C	0.00453	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr3	24163645	C	G	1.00972E-05	THRB	-	FALSE
chr1	236702210	A	G	0.00153	LGALS8	+	FALSE
chr2	217366897	A	G	0.00440		.	FALSE	AluSz6	SINE,Alu
chr2	128063697	G	A	0.00775	MAP3K2	-	FALSE
chr7	299843	G	A	6.16222E-05	FAM20C	+	FALSE
chr1	245006499	C	G	0.00171	COX20	+	FALSE
chr1	85786957	T	G	0.00959	DDAH1	-	FALSE
chr16	88784415	T	C	0.00750	PIEZO1	-	TRUE	AluSx3	SINE,Alu
chr1	144594308	G	A	0.00577	NBPF20	+	FALSE
chr5	87566382	T	A	0.00997	TMEM161B-AS1	+	FALSE
chr1	100316589	A	G	0.00481	AGL	+	FALSE
chr7	55433880	G	C	0.00115	LANCL2	+	FALSE
chr3	45636335	A	G	0.00262	LIMD1	+	FALSE	(AC)n	SINE,Alu
chr1	10520331	C	T	0.00280		.	FALSE	AluSx1	SINE,Alu
chr1	32739982	G	A	0.00300	LCK	+	FALSE
chr6	31506635	T	G	6.78064E-05		.	FALSE
chr3	12641718	G	A	0.00091	RAF1	-	FALSE
chr17	42876398	T	C	0.00697	GJC1	-	FALSE	AluSz6	SINE,Alu
chr3	195963395	A	G	0.00028		.	FALSE
chr1	9328242	A	G	5.63395E-05	H6PD	+	TRUE	AluJr	SINE,Alu
chr12	133298121	A	G	1.85542E-11	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	25570692	C	T	0.00095	RSRP1	-	FALSE
chr1	93827995	C	T	0.00714	DR1	+	FALSE
chr2	128950515	A	G	0.00208	UGGT1	+	TRUE	AluSc	SINE,Alu
chr1	100361925	G	A	0.00181	AGL	+	FALSE
chr4	56236845	A	G	6.76031E-06	SRD5A3,SRD5A3-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	109746825	A	G	0.00281	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr2	86252136	T	C	0.00015	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr1	32384710	G	A	0.00299	PTP4A2	-	FALSE
chr1	16011005	G	C	0.00616	PLEKHM2	+	FALSE	(GCG)n	SINE,Alu
chr13	73651653	G	T	0.00532	KLF5	+	FALSE
chr7	17384887	A	G	4.32861E-08	AHR	+	TRUE	AluSc	SINE,Alu
chr17	7124772	G	A	0.00175	ACADVL	+	FALSE
chr1	27992823	A	C	0.00087	IFI6	-	FALSE	FAM	SINE,Alu
chr1	11846092	G	T	0.00877	C1orf167,MTHFR	+,-	FALSE
chr17	67538540	T	C	0.00295		.	FALSE
chr5	149829071	T	C	0.00360	RPS14	-	FALSE
chr19	198079	T	C	0.00933	LINC01002	-	FALSE
chr19	65146	G	A	0.00761	WASH5P	-	FALSE
chr1	23833607	A	T	0.00890	E2F2	-	FALSE
chr1	94995491	C	T	0.00036	F3	-	FALSE	AluSx	SINE,Alu
chr1	117530188	A	G	0.00199	PTGFRN	+	FALSE
chr17	42877749	T	C	0.00287	GJC1	-	TRUE	AluSg	SINE,Alu
chr7	300181	G	A	2.39021E-07	FAM20C	+	FALSE
chr2	232319611	A	T	3.84700E-07	NCL	-	FALSE
chr1	54692341	T	C	0.00045	SSBP3	-	FALSE	(T)n	SINE,Alu
chr1	949608	G	A	0.00435	ISG15	+	FALSE
chr1	38155699	T	G	0.00734	C1orf109	-	FALSE	AluSx1	SINE,Alu
chr2	128601464	T	C	0.00161		.	FALSE	AluJr	SINE,Alu
chr1	33961147	T	G	0.00236	ZSCAN20	+	FALSE
chr6	7310259	A	G	0.00092	SSR1	-	FALSE
chr3	100083423	T	C	0.00678	TOMM70	-	FALSE	FAM	SINE,Alu
chr14	72041443	C	T	0.00842	SIPA1L1	+	FALSE
chr1	25570549	C	A	0.00387	RSRP1	-	FALSE
chr17	65335292	T	C	6.31480E-06	PSMD12	-	TRUE	AluSx	SINE,Alu
chr6	44222157	G	A	0.00856	SLC35B2	-	FALSE
chr11	32625925	A	G	0.00845	CCDC73	-	FALSE	AluJb	SINE,Alu
chr2	178406765	T	A	0.00325	AGPS	+	FALSE
chr1	19653870	T	C	0.00477	PQLC2	+	FALSE
chr16	2821989	C	T	0.00709	TCEB2	-	FALSE
chr1	19542679	T	C	0.00584	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr1	1252221	T	C	0.00728	CPSF3L	-	TRUE	AluSx	SINE,Alu
chr1	52520867	T	A	7.48778E-05	TXNDC12	-	FALSE
chr1	116239368	G	A	5.97604E-05	VANGL1	+	FALSE
chr1	85484276	C	T	0.00168	MCOLN3	-	FALSE
chr1	121133733	G	A	0.00552	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr8	56985611	A	T	0.00028	RPS20	-	FALSE
chr3	195701389	C	A	0.00227	SDHAP1	-	FALSE
chr1	52306066	T	A	0.00154	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr3	88104072	T	A	0.00815	CGGBP1	-	FALSE
chr1	146650542	A	G	0.00017	PDIA3P1	+	FALSE
chr1	201438097	G	C	2.75480E-05	PHLDA3	-	FALSE
chr1	36067760	T	C	0.00768	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	3592638	T	C	0.00164	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr8	145159706	C	G	0.00561	MAF1	+	FALSE
chr1	1419768	A	G	0.00250	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr3	172224303	A	G	0.00524	TNFSF10	-	FALSE
chr5	72801321	T	A	0.00427	BTF3	+	FALSE
chr1	84373309	T	C	0.00627	TTLL7	-	FALSE
chr1	143398850	G	T	0.00639		.	FALSE
chr4	165998078	T	C	0.00407	TMEM192	-	TRUE	AluSx	SINE,Alu
chr7	38764358	T	C	0.00675	VPS41	-	TRUE	AluSp	SINE,Alu
chr1	36067925	T	C	1.59250E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr14	100762714	T	C	0.00573	SLC25A29	-	TRUE	AluJo	SINE,Alu
chr1	45244053	A	G	0.00621	RPS8	+	FALSE
chr3	122283289	C	A	0.00072	DTX3L,PARP9	+,-	FALSE
chr1	144822066	A	G	0.00020	NBPF20,NBPF9	+	FALSE
chr7	99017241	C	A	0.00721	PTCD1,ATP5J2-PTCD1	-	FALSE
chr12	125511226	A	G	0.00205	THRIL	-	FALSE	AluSx1	SINE,Alu
chr16	56510329	T	G	0.00247	OGFOD1	+	FALSE
chr1	10517688	T	C	0.00630		.	FALSE	AluSx1	SINE,Alu
chr2	24223256	A	G	0.00711	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr1	51822219	G	A	0.00223	EPS15	-	FALSE
chr1	74672926	T	A	0.00159	FPGT-TNNI3K,FPGT	+	FALSE	Kanga1d	SINE,Alu
chr2	72968438	G	T	0.00147	EXOC6B	-	FALSE
chr1	12164538	G	A	8.95385E-07	TNFRSF8	+	FALSE
chr4	57326873	A	G	0.00342	PAICS	+	TRUE	AluSx1	SINE,Alu
chr5	9549459	A	G	0.00783	SNHG18	+	FALSE
chr1	7833544	T	C	0.00186	VAMP3	+	FALSE
chr3	195963500	C	T	0.00014		.	FALSE
chrX	77084042	T	C	0.00703	MAGT1	-	TRUE	AluSz	SINE,Alu
chr11	32623987	T	A	5.29256E-06	CCDC73,EIF3M	+,-	FALSE
chr2	28002603	C	A	0.00010	MRPL33	+	FALSE
chr6	33384325	G	T	0.00456		.	FALSE

RBP	ZEB1
Knock-Method	siRNA
RBP Family	zf-C2H2
Biosample Name	MDA-231-D
Tissue Type	Breast
Biosample Type	Cell line
# of Control	1
# of Treat	2
Species	Human
Data Source	GEO
Profile ID	GSE98273
Platform	GPL17303
Pubmed ID	28618162

ZEB1 - Target Gene Network