RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr8	91637754	A	T	0.00297	TMEM64	-	FALSE
chr1	89447854	G	T	0.00310	KYAT3,RBMXL1	-	FALSE
chr12	133297966	A	G	0.00000	PGAM5	+	FALSE	AluJo	SINE,Alu
chr1	145688665	T	A	0.00015	NBPF20,NBPF10,RNF115	+	FALSE
chr3	33907915	A	G	3.74419E-09	PDCD6IP	+	FALSE
chr2	42577806	T	A	0.00276	COX7A2L	-	FALSE
chr2	37328034	T	C	0.00047		.	FALSE
chr1	33086754	T	C	0.00065		.	FALSE	AluY	SINE,Alu
chr6	24720534	T	C	0.00053		.	FALSE
chr1	36806071	G	A	0.00126	STK40	-	FALSE
chr3	42253664	C	T	0.00065	TRAK1	+	FALSE
chr17	56081432	G	A	4.92367E-05	SRSF1	-	FALSE
chr1	1718810	G	A	5.85228E-05	GNB1	-	FALSE
chr1	36392543	G	T	0.00971		.	FALSE	(T)n	SINE,Alu
chr12	120898697	A	G	0.00488	GATC	+	TRUE	AluY	SINE,Alu
chr5	40852810	G	T	0.00276	CARD6	+	FALSE
chr1	32799437	C	T	0.00318	MARCKSL1	-	FALSE
chr1	53290298	A	G	0.00258	ZYG11B	+	TRUE	AluSg4	SINE,Alu
chr6	29910583	C	T	4.95604E-05		.	FALSE
chr1	183105705	G	A	0.00074	LAMC1	+	FALSE
chr3	172115476	A	G	0.00892	FNDC3B	+	FALSE	(A)n	SINE,Alu
chr7	105162562	G	C	0.00096	PUS7	-	FALSE
chr1	15904318	C	T	9.04121E-06	AGMAT	-	FALSE
chr21	33032035	T	A	1.90109E-05	SOD1	+	FALSE
chr3	197611125	A	G	0.00948		.	FALSE	AluSx1	SINE,Alu
chr1	100549715	T	A	0.00765	SASS6	-	FALSE
chr5	118174735	T	C	0.00139	DTWD2	-	TRUE	AluY	SINE,Alu
chr2	143638998	G	A	0.00496	KYNU	+	FALSE
chr1	109479978	G	T	0.00057	CLCC1	-	FALSE
chr1	70833400	C	T	0.00224	HHLA3	+	FALSE	LTR7	SINE,Alu
chr2	217366866	A	G	0.00247		.	FALSE	AluSz6	SINE,Alu
chr4	128756632	A	G	0.00072		.	FALSE	AluSx	SINE,Alu
chr1	10520378	T	C	0.00047		.	FALSE	AluSx1	SINE,Alu
chr2	114513901	C	T	0.00655	SLC35F5	-	FALSE
chr1	24134721	T	C	0.00448	HMGCL	-	FALSE
chr7	65618870	A	G	0.00097	CRCP	+	TRUE	AluSx3	SINE,Alu
chr1	27733305	A	C	0.00374	WASF2	-	FALSE
chr2	109301897	T	C	0.00306	LIMS1	+	FALSE
chr6	116256595	C	A	5.71236E-05		.	FALSE
chr1	45244053	A	G	0.00202	RPS8	+	FALSE
chr7	44841489	A	G	0.00015	PPIA	+	TRUE	AluJr	SINE,Alu
chr1	179044181	A	G	1.64117E-06	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	16812082	A	G	0.00545	CROCCP3	-	FALSE
chr1	145441841	A	T	0.00636	NBPF20,NBPF10,TXNIP	+	FALSE
chr12	123346990	G	T	0.00055	HIP1R	+	FALSE
chr2	64327544	G	T	0.00917	PELI1	-	FALSE
chr1	1337334	G	T	0.00549	LOC148413,MRPL20	+,-	FALSE
chr3	179117128	T	C	0.00239	GNB4	-	TRUE	AluSz	SINE,Alu
chr1	36522603	A	G	0.00012		.	FALSE	AluSc	SINE,Alu
chr1	987670	T	G	0.00148	AGRN	+	FALSE
chr1	28564252	A	G	0.00118	ATPIF1	+	FALSE
chr1	62164735	C	T	0.00016	TM2D1	-	FALSE	AluJb	SINE,Alu
chr5	175811091	G	A	0.00592	NOP16	-	FALSE
chr7	100279138	A	T	0.00741	GIGYF1	-	FALSE	A-rich	SINE,Alu
chr8	12283473	C	T	0.00582	FAM86B2	-	FALSE
chr1	46829013	A	G	0.00360	NSUN4	+	FALSE
chr3	13670776	T	C	0.00336	FBLN2	+	FALSE
chr5	149364144	A	G	0.00014	SLC26A2	+	TRUE	AluSc8	SINE,Alu
chr1	236716959	C	T	0.00727	HEATR1	-	FALSE
chr1	10519982	T	C	0.00572		.	FALSE	AluJr	SINE,Alu
chr20	25428646	A	G	9.98122E-05	GINS1	+	TRUE	AluJb	SINE,Alu
chr2	37429677	A	G	0.00279	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	220154768	C	T	0.00067	RNU5F-1,EPRS	+,-	FALSE
chr1	9328242	A	G	5.63395E-05	H6PD	+	TRUE	AluJr	SINE,Alu
chr4	39552022	T	C	0.00015	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr1	120539711	G	T	0.00627	NOTCH2	-	FALSE
chr20	25428308	A	G	0.00185	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	144902696	A	T	0.00997	NBPF20,PDE4DIP	+,-	FALSE
chr3	160791358	C	T	0.00018	PPM1L	+	FALSE
chr7	6064007	T	A	0.00551	EIF2AK1	-	FALSE
chr3	141668922	T	C	0.00937	TFDP2	-	TRUE	AluSz	SINE,Alu
chr11	94801633	A	T	0.00808	SRSF8	+	FALSE
chr1	16958064	A	G	2.44983E-05		.	FALSE
chr2	118854086	G	C	0.00066	INSIG2	+	FALSE
chr2	217366911	A	G	0.00449		.	FALSE	AluSz6	SINE,Alu
chr1	2335871	G	A	0.00298	RER1	+	FALSE
chr10	60047609	A	G	0.00979	CISD1	+	FALSE	(A)n	SINE,Alu
chr6	109001952	A	G	0.00978	FOXO3	+	FALSE	(A)n	SINE,Alu
chr2	183622547	T	G	0.00346	DNAJC10	+	FALSE
chr17	34942575	G	A	0.00374	GGNBP2	+	FALSE	A-rich	SINE,Alu
chr1	10519888	T	C	0.00986		.	FALSE	AluJr	SINE,Alu
chr4	84525985	T	G	0.00041	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr3	10168785	T	C	0.00198	BRK1	+	FALSE
chr17	4929000	A	G	0.00214	KIF1C	+	TRUE	AluY	SINE,Alu
chr1	40537937	A	C	0.00091	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	26608015	T	A	3.80922E-07		.	FALSE
chr2	86850798	A	G	0.00267	RNF103-CHMP3,RNF103	-	FALSE
chr1	75171751	T	C	0.00161	CRYZ	-	FALSE
chr4	10443062	T	G	0.00303	ZNF518B	-	FALSE
chr4	170037423	G	T	0.00802	SH3RF1	-	FALSE
chr5	56177850	A	T	0.00856	MAP3K1	+	FALSE	(CAA)n	SINE,Alu
chr1	46075715	A	G	0.00401	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	16973198	G	A	0.00514	MST1P2	+	FALSE
chr7	131241085	G	A	0.00600	PODXL	-	FALSE	(GCA)n	SINE,Alu
chr1	567783	T	C	0.00427	MIR6723	-	FALSE
chr1	16932495	A	C	0.00199	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr7	128167988	T	C	0.00290		.	FALSE	AluSg	SINE,Alu
chr1	19953129	T	A	0.00934	MINOS1,MINOS1-NBL1	+	FALSE
chr1	46827769	C	T	0.00103	NSUN4	+	FALSE
chr4	165996811	T	C	6.80024E-05		.	FALSE	AluSg4	SINE,Alu
chr1	179326908	A	G	0.00037	SOAT1	+	TRUE	AluJo	SINE,Alu
chr2	206981796	T	C	0.00137		.	FALSE	AluJb	SINE,Alu
chr5	141691252	T	C	0.00596	SPRY4	-	FALSE
chr1	31732892	G	A	0.00408	SNRNP40	-	FALSE
chr1	154557171	G	A	0.00045	ADAR	-	FALSE	A-rich	SINE,Alu
chr3	98299365	T	G	0.00133	CPOX	-	FALSE
chr1	160231113	C	T	0.00204	DCAF8	-	FALSE
chr2	206987629	T	C	0.00491		.	FALSE	AluJb	SINE,Alu
chr6	143832707	G	A	0.00418	FUCA2	-	FALSE	(GCA)n	SINE,Alu
chr1	143189473	C	A	0.00626	LOC102723769	-	FALSE
chr1	1251631	T	C	0.00256	CPSF3L	-	TRUE	AluSz	SINE,Alu
chr1	16918486	C	T	0.00415	NBPF1	-	FALSE
chr2	171608711	T	A	0.00492	LOC101926913	-	FALSE
chr1	9162224	T	C	0.00523		.	FALSE	AluSx	SINE,Alu
chr7	128143797	A	G	4.50405E-06		.	FALSE	AluSq2	SINE,Alu
chr1	59124223	G	A	0.00327	MYSM1	-	FALSE	MIR3	SINE,Alu
chr17	26672363	G	A	0.00599	TNFAIP1	+	FALSE
chr7	44800040	C	A	0.00565	ZMIZ2	+	FALSE
chr1	148241604	G	T	0.00756	NBPF8	-	FALSE	U1	SINE,Alu
chr5	151041869	T	A	0.00305	SPARC	-	FALSE
chr4	113152490	G	A	0.00221		.	FALSE
chr1	9330740	G	C	0.00077	H6PD	+	FALSE
chr1	16933740	T	A	0.00286	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr16	10623639	T	C	0.00392	EMP2	-	TRUE	AluSp	SINE,Alu
chr5	122359499	C	A	0.00304	PPIC	-	FALSE	(AC)n	SINE,Alu
chr12	125511942	A	G	0.00015	THRIL	-	FALSE	AluSx1	SINE,Alu
chr6	37138024	G	C	0.00892	PIM1	+	FALSE	(GCA)n	SINE,Alu
chr1	33148196	A	G	0.00303	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	33146255	C	A	0.00182	SYNC,RBBP4	+,-	FALSE
chr1	51873951	G	A	0.00588	EPS15	-	FALSE
chr1	10517527	T	C	8.32015E-05		.	FALSE	AluSx1	SINE,Alu
chr1	1653046	T	A	0.00986	CDK11B,CDK11A	-	FALSE
chr1	33086812	T	C	0.00250		.	FALSE	AluY	SINE,Alu
chr1	46828734	T	C	0.00604	NSUN4	+	FALSE
chr4	153545691	T	C	0.00671		.	FALSE	AluJb	SINE,Alu
chr3	37031951	G	A	0.00914	EPM2AIP1	-	FALSE	(A)n	SINE,Alu
chr2	3592674	C	A	0.00011	RNASEH1	-	FALSE
chr1	144599819	C	T	0.00682	NBPF20	+	FALSE
chr1	16890331	C	G	0.00226	NBPF1	-	FALSE
chr6	42857542	T	A	0.00029	RPL7L1	+	FALSE	MIRc	SINE,Alu
chr1	220231959	T	C	2.75997E-05	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr8	124262076	G	T	0.00115	ZHX1-C8orf76,ZHX1	-	FALSE
chr7	22983890	T	C	0.00097	FAM126A	-	FALSE
chr1	1245100	C	T	0.00656	PUSL1	+	FALSE
chr8	30536544	T	C	0.00122	GSR	-	TRUE	AluSp	SINE,Alu
chr1	65898873	G	C	0.00530	LEPR,LEPROT	+	FALSE
chr1	10043527	A	G	0.00811	NMNAT1	+	TRUE	AluSx3	SINE,Alu
chr3	47627382	A	T	2.68370E-06	SMARCC1	-	FALSE
chr2	171634349	T	A	0.00104	ERICH2	+	FALSE
chr8	144827207	A	T	0.00038	FAM83H-AS1	+	FALSE	ERVL-B4-int	SINE,Alu
chr1	44088568	G	A	0.00274	PTPRF	+	FALSE	A-rich	SINE,Alu
chr1	19542463	T	C	0.00060	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	30047174	A	T	0.00556	RBMS3	+	FALSE
chr5	149823789	G	T	0.00793		.	FALSE
chr6	31321916	A	G	0.00000		.	FALSE
chr1	16921146	T	C	0.00039	NBPF1	-	FALSE
chr1	9160963	T	C	0.00354		.	FALSE	AluJb	SINE,Alu
chr4	187509420	G	A	0.00121	FAT1	-	FALSE
chr1	45279903	C	T	0.00052		.	FALSE	(TCTT)n	SINE,Alu
chr1	220231484	T	C	0.00954	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	85785549	T	C	0.00320	DDAH1	-	FALSE
chr1	118502767	G	A	0.00624	WDR3,SPAG17	+,-	FALSE	(GT)n	SINE,Alu
chr5	125961509	A	G	0.00141	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	16890607	G	A	0.00869	NBPF1	-	FALSE
chr1	35650022	C	A	0.00762	SFPQ	-	FALSE
chr21	44331206	A	G	0.00167		.	FALSE	AluSz	SINE,Alu
chr1	91990445	A	G	5.21972E-05	CDC7	+	FALSE	LFSINE_Vert	SINE,Alu
chr1	9161357	T	C	0.00739		.	FALSE	AluSx	SINE,Alu
chr1	1653046	T	A	0.00686	CDK11B,CDK11A	-	FALSE
chr1	16929056	C	T	0.00398	NBPF1	-	FALSE
chr1	160966353	T	C	0.00011	F11R	-	TRUE	AluSg	SINE,Alu
chr3	195962244	G	T	0.00083		.	FALSE
chr1	16889864	C	A	0.00094	NBPF1	-	FALSE
chr3	195694454	C	T	0.00307	SDHAP1	-	FALSE
chr3	33893987	A	G	0.00123	PDCD6IP	+	FALSE
chr19	42375602	A	G	0.00011		.	FALSE	AluSx	SINE,Alu
chr1	145293059	A	G	0.00063	NBPF20	+	FALSE
chr4	89181478	T	C	0.00656	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr15	63445744	A	T	0.00539	RPS27L	-	FALSE
chr1	36770600	G	T	0.00792	THRAP3	+	FALSE	(T)n	SINE,Alu
chr3	127790249	A	G	0.00276	RUVBL1,SEC61A1	+,-	FALSE
chr4	152025795	T	A	0.00516	RPS3A	+	FALSE
chr3	15114492	T	C	0.00073	RBSN	-	TRUE	AluY	SINE,Alu
chr1	10517513	T	C	0.00088		.	FALSE	AluSx1	SINE,Alu
chr5	93018883	A	T	0.00393	FAM172A	-	FALSE	(TCA)n	SINE,Alu
chr1	45973928	G	A	0.00093	MMACHC	+	FALSE
chr1	3545191	C	T	5.51731E-05	TPRG1L	+	FALSE
chr13	111111173	G	A	0.00224	COL4A2,COL4A2-AS2	+,-	FALSE
chr1	114940228	C	T	0.00252	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	118408218	C	A	0.00857	GDAP2	-	FALSE
chr2	129024313	A	G	0.00612	HS6ST1	-	FALSE
chr1	46125880	T	C	0.00686	GPBP1L1	-	FALSE
chr5	6748659	T	C	0.00032	PAPD7	+	FALSE
chr1	55316322	A	G	0.00172	DHCR24	-	FALSE
chr1	28826130	A	G	1.79185E-05	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	33148216	A	G	0.00321	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	35251229	G	A	0.00516	GJB3	+	FALSE
chr19	9672989	T	C	0.00044		.	FALSE	AluSx3	SINE,Alu
chr7	128143932	A	G	0.00332		.	FALSE	AluSq2	SINE,Alu
chr6	42856158	A	G	0.00118	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	22852880	G	C	0.00247	ZBTB40	+	FALSE
chr12	27953264	A	T	0.00688	KLHL42	+	FALSE
chr2	69688852	T	C	0.00414	AAK1	-	TRUE	AluSq2	SINE,Alu
chr5	115166350	T	C	0.00148	ATG12	-	TRUE	AluJr	SINE,Alu
chr1	70718276	G	T	0.00836		.	FALSE
chr19	42375586	A	G	0.00016		.	FALSE	AluSx	SINE,Alu
chr1	77166017	G	A	0.00627		.	FALSE
chr6	42060429	T	C	0.00017		.	FALSE	AluSz6	SINE,Alu
chr1	20982216	T	A	0.00065	DDOST	-	FALSE
chr7	6694922	G	C	0.00996	ZNF316	+	FALSE
chr1	16841620	T	A	0.00023		.	FALSE
chr5	118174733	T	C	0.00037	DTWD2	-	TRUE	AluY	SINE,Alu
chr12	54634283	T	C	0.00047	CBX5	-	TRUE	AluJr	SINE,Alu
chr3	149683506	G	C	0.00147	PFN2	-	FALSE
chr4	3514695	A	G	1.35580E-12	LRPAP1	-	FALSE
chr3	191110544	T	G	0.00031	CCDC50	+	FALSE	AluSz	SINE,Alu
chr3	88103602	C	A	0.00284	CGGBP1	-	FALSE
chr1	16133978	T	C	0.00515	UQCRHL	-	FALSE
chr19	46053369	T	C	0.00504	OPA3	-	TRUE	AluSx1	SINE,Alu
chr3	156258283	T	C	0.00071	SSR3	-	TRUE	AluYk3	SINE,Alu
chr3	195961254	C	T	0.00119		.	FALSE
chr3	197400501	C	G	0.00270	RUBCN	-	FALSE
chr1	145513016	A	G	0.00400	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr11	61732461	G	T	2.02182E-05	FTH1	-	FALSE
chr1	204524846	A	G	0.00940	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	28661576	A	G	0.00625	MED18	+	TRUE	AluSg	SINE,Alu
chr20	35521047	T	A	0.00064	TLDC2,SAMHD1	+,-	FALSE
chr2	128064448	G	T	0.00637	MAP3K2	-	FALSE	(GT)n	SINE,Alu
chr1	86049363	C	T	0.00064	CYR61	+	FALSE
chr14	31916792	C	T	3.89824E-05	LOC101927124,DTD2	+,-	FALSE	AluSc8	SINE,Alu
chr6	126661502	G	T	0.00873	CENPW	+	FALSE
chr3	194998813	A	G	0.00572	ACAP2	-	FALSE	AluSx1	SINE,Alu
chr1	146627405	C	G	0.00074	PRKAB2	-	FALSE
chr1	205111761	A	C	0.00497	DSTYK	-	FALSE
chr1	241796949	G	A	0.00053	OPN3,CHML	-	FALSE
chr1	145689566	A	G	2.12475E-08	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	144932199	C	A	0.00584	NBPF20,PDE4DIP	+,-	FALSE
chr2	85773494	T	C	0.00099	GGCX	-	TRUE	AluY	SINE,Alu
chr1	205056476	T	C	0.00096	RBBP5	-	FALSE	AluSx	SINE,Alu
chr20	309186	A	G	0.00665	SOX12	+	FALSE	A-rich	SINE,Alu
chr2	178084651	A	G	1.09207E-09	HNRNPA3	+	FALSE
chr1	92862804	A	G	0.00043		.	FALSE	AluJr	SINE,Alu
chr7	152551581	T	A	0.00313	ACTR3B	+	FALSE
chr4	110971055	A	T	0.00048	ELOVL6	-	FALSE
chr1	144932151	G	T	0.00294	NBPF20,PDE4DIP	+,-	FALSE
chr14	74179051	T	C	0.00982	PNMA1	-	FALSE	Charlie15b	SINE,Alu
chr7	20178562	T	C	1.84789E-06	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr7	64023437	A	G	0.00073	ZNF680	-	FALSE
chr5	108714298	T	C	0.00967	PJA2	-	FALSE
chr8	27632073	T	G	0.00013	ESCO2	+	FALSE

RBP	ZFR
Knock-Method	siRNA
RBP Family	DZF
Biosample Name	HEK293T
Tissue Type	Kidney
Biosample Type	Cell line
# of Control	3
# of Treat	3
Species	Human
Data Source	GEO
Profile ID	GSE99231
Platform	GPL11154
Pubmed ID	29559679

ZFR - Target Gene Network