Dataset Overview
RBP
ZMAT4
Knock-Method
siRNA
RBP Family
zf-met
Biosample Name
MCF7
Tissue Type
Breast
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
GEO
Profile ID
GSE79586
Platform
GPL167891
Pubmed ID
28813674
ZMAT4 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of ZMAT4
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
AARS
128.87
115.97
-0.15357
0.03586
0.38302
AARS2
5.82
4.85
-0.26018
0.01853
0.27197
ABAT
21.98
28.23
0.35973
1.03881E-06
0.00016
ABCC2
0.32
0.95
1.58802
6.74286E-13
4.67173E-10
ABCC3
7.03
8.75
0.42120
9.68878E-05
0.00705
ABCC5
26.43
30.8
0.33554
0.00017
0.01078
ABCD1
26.9
34.44
0.30162
0.00133
0.05240
ABCG2
46.25
63.27
0.23311
0.00172
0.06458
ABHD14B
14.05
11.42
-0.29792
0.01302
0.22393
ABL2
3.75
4.55
0.31888
0.00049
0.02527
Showing 1 to 10 of 1,474 entries
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Function Analysis of Target Genes of ZMAT4
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABHD11
73152205_73152472_73151975_73152065_73152657_73152713
0.00323
-0.428
DataSet_02_91
View details
AC005154.1
30618621_30618744_30617519_30617707_30618846_30618930
0.00002
0.29
DataSet_02_91
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AC005670.2
45012394_45012535_45009432_45009565_45015964_45016070
0.00393
0.239
DataSet_02_91
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AC007040.2
71218959_71219113_71216878_71216946_71220825_71220905
0.00053
0.137
DataSet_02_91
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AC068580.4
1774762_1774900_1768976_1769349_1775032_1775131
0.00140
0.274
DataSet_02_91
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AC093752.1
120464907_120465000_120449894_120449944_120471533_120471598
0.00056
-0.666
DataSet_02_91
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ACADVL
7124242_7124377_7124076_7124149_7124856_7124974
0.00000
-0.9
DataSet_02_91
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ACIN1
23536522_23537880_23535174_23535217_23538684_23538734
0.00732
-0.44
DataSet_02_91
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ACP1
272036_272065_271865_271939_272191_272305
0.00700
0.096
DataSet_02_91
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ACSF3
89164998_89165171_89160216_89160404_89167069_89167175
0.00000
0.9
DataSet_02_91
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC002116.1
36503922_36503991_36504245_36504324_36502305_36502366
0.00087
0.5
DataSet_02_91
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AC026362.1
123460357_123460414_123461200_123461314_123459866_123459930
0.00003
0.75
DataSet_02_91
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ACP1
272036_272150_272191_272305_271865_271939
0.00068
0.101
DataSet_02_91
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AFG3L1P
90044046_90044210_90045217_90045286_90038993_90039173
0.00000
0.75
DataSet_02_91
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ANXA2
60688349_60688626_60689456_60689537_60678226_60678285
0.00195
-0.5
DataSet_02_91
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C11orf54
93488375_93488552_93490481_93490631_93487101_93487203
0.00068
0.416
DataSet_02_91
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CLN6
68506627_68506726_68510873_68510988_68503600_68503656
0.00243
0.584
DataSet_02_91
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CNOT8
154244751_154244945_154250220_154250382_154242766_154242955
0.00000
1.0
DataSet_02_91
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CPSF4
99047898_99047994_99048324_99048418_99045743_99045896
0.00691
-0.375
DataSet_02_91
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DAP3
155701734_155701824_155706736_155706854_155701146_155701206
0.00472
-0.276
DataSet_02_91
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Showing 1 to 10 of 45 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACAD9
128598471_128598860_128598471_128598684_128603495_128603589
0.00577
0.07
DataSet_02_91
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APTX
33001513_33001610_33001564_33001610_32989756_32989893
0.00056
-0.524
DataSet_02_91
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ARIH1
72873071_72873332_72873071_72873218_72874415_72874528
0.00654
0.217
DataSet_02_91
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ARMC10
102724128_102724509_102724128_102724277_102727076_102727211
0.00049
-0.584
DataSet_02_91
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BAX
49458804_49459090_49458804_49458856_49459454_49459590
0.00003
0.678
DataSet_02_91
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BRD8
137507033_137507099_137507049_137507099_137506726_137506849
0.00428
-0.5
DataSet_02_91
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BTAF1
93718821_93719039_93718821_93718911_93719541_93719637
0.00497
0.085
DataSet_02_91
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CAPN1
64949905_64950033_64949905_64950012_64950171_64950439
0.00011
-0.662
DataSet_02_91
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CD151
832993_833026_832993_833022_834529_834745
0.00044
0.35
DataSet_02_91
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CFL2
35182459_35182767_35182602_35182767_35182265_35182342
0.00000
0.607
DataSet_02_91
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Showing 1 to 10 of 84 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ADAT1
75652483_75652596_75652483_75652538_75654163_75654232
0.00000
-0.686
DataSet_02_91
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AFMID
76193215_76193641_76193226_76193641_76187050_76187141
0.00086
0.391
DataSet_02_91
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AL365295.1
53836169_53836219_53836172_53836219_53784748_53784856
0.00502
0.0
DataSet_02_91
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ALDH7A1
125894931_125895026_125894931_125894987_125896774_125896816
0.00039
0.689
DataSet_02_91
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AP1M2
10683346_10683764_10683346_10683571_10685092_10685168
0.00965
0.342
DataSet_02_91
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APEH
49713488_49713948_49713810_49713948_49713323_49713399
0.00120
-0.5
DataSet_02_91
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ARF4
57569624_57569759_57569624_57569734_57570110_57570191
0.00004
-0.23
DataSet_02_91
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ARMCX2
100914061_100914134_100914061_100914122_100914404_100914487
0.00606
-0.355
DataSet_02_91
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ATG16L2
72532243_72532786_72532592_72532786_72528800_72528900
0.00935
0.459
DataSet_02_91
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ATP6V0D1
67472873_67473050_67472873_67472998_67473176_67473254
0.00104
0.666
DataSet_02_91
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACTB
5568791_5569294_5568791_5569031_5569165_5569294
0.00654
-0.466
DataSet_02_91
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ADD1
2910241_2911158_2910241_2910331_2911065_2911158
0.00694
-0.433
DataSet_02_91
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AP1G2
24032588_24032847_24032588_24032711_24032792_24032847
0.00147
-0.548
DataSet_02_91
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AP1G2
24032924_24033430_24032924_24033065_24033254_24033430
0.00050
0.535
DataSet_02_91
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ARL16
79649063_79650624_79649063_79650156_79650565_79650624
0.00295
-0.278
DataSet_02_91
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ATG4D
10655458_10655806_10655458_10655542_10655632_10655806
0.00204
-0.166
DataSet_02_91
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BAX
49458804_49459090_49458804_49458856_49458943_49459090
0.00012
0.609
DataSet_02_91
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CCDC125
68616063_68616407_68616063_68616172_68616291_68616407
0.00149
0.29
DataSet_02_91
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CCNDBP1
43486278_43486659_43486278_43486335_43486612_43486659
0.00076
0.267
DataSet_02_91
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CDK16
47087965_47088389_47087965_47088043_47088129_47088389
0.00187
-0.6
DataSet_02_91
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
220231946
T
C
0.00705
RNU5F-1,BPNT1
+,-
FALSE
AluSz
SINE,Alu
chr1
47767914
G
A
0.00061
STIL
-
FALSE
chr1
9160989
T
C
0.00041
.
FALSE
AluJb
SINE,Alu
chr1
47903063
G
C
0.00292
FOXD2
+
FALSE
chr1
89271574
T
C
3.83690E-05
PKN2
+
FALSE
chr1
16890130
A
C
0.00412
NBPF1
-
FALSE
chr1
27202812
T
C
0.00356
.
FALSE
AluSq2
SINE,Alu
chr1
32687472
G
A
0.00877
TMEM234,EIF3I
+,-
FALSE
chr1
46521559
A
T
0.00177
PIK3R3
-
FALSE
chr1
10042987
A
G
0.00488
NMNAT1
+
TRUE
AluSc
SINE,Alu
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression