RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	220231946	T	C	0.00705	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	47767914	G	A	0.00061	STIL	-	FALSE
chr9	46687845	G	C	0.00389	FGF7P6,LOC554249,LOC102724238	+,-	FALSE
chr1	9160989	T	C	0.00041		.	FALSE	AluJb	SINE,Alu
chr4	152025795	T	A	0.00516	RPS3A	+	FALSE
chr1	47903063	G	C	0.00292	FOXD2	+	FALSE
chr1	89271574	T	C	3.83690E-05	PKN2	+	FALSE
chr1	16890130	A	C	0.00412	NBPF1	-	FALSE
chr19	24104040	A	G	0.00476	ZNF726	+	TRUE	AluSg4	SINE,Alu
chr3	172351006	C	G	6.14326E-06	NCEH1	-	FALSE
chr3	196670099	A	C	6.06146E-06	NCBP2-AS2	+	FALSE
chr1	27202812	T	C	0.00356		.	FALSE	AluSq2	SINE,Alu
chr3	182637840	C	T	1.61172E-05	ATP11B	+	FALSE
chr1	32687472	G	A	0.00877	TMEM234,EIF3I	+,-	FALSE
chr3	155660873	A	G	0.00018		.	FALSE	AluSz	SINE,Alu
chr12	9395329	G	A	0.00814	LINC00987	+	FALSE
chr1	46521559	A	T	0.00177	PIK3R3	-	FALSE
chrX	77083981	T	C	0.00647	MAGT1	-	TRUE	AluSz	SINE,Alu
chr3	49315576	T	C	0.00191	USP4	-	FALSE
chr6	29911970	G	A	0.00284		.	FALSE
chr3	195243003	A	C	0.00301	PPP1R2	-	FALSE
chr1	10042987	A	G	0.00488	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	6582527	T	C	0.00139	NOL9	-	TRUE	AluSx1	SINE,Alu
chr1	16200163	A	G	0.00112	SPEN	+	FALSE
chr5	34189578	T	C	0.00378		.	FALSE
chr1	179852074	T	C	0.00309	TOR1AIP1	+	FALSE
chr17	57279253	A	G	1.08987E-07	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	145688664	A	T	0.00081	NBPF20,NBPF10,RNF115	+	FALSE
chr8	27661063	T	A	0.00138	ESCO2	+	FALSE	(AC)n	SINE,Alu
chr1	16933629	A	G	0.00310	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	16894514	C	T	0.00348	NBPF1	-	FALSE
chr19	29703961	A	C	0.00376	UQCRFS1	-	FALSE
chr1	36067760	T	C	0.00024	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	16945227	G	T	0.00353	CROCCP2	-	FALSE
chr1	1431165	C	T	0.00392	ATAD3B	+	FALSE
chr1	145290874	C	T	0.00380	NBPF20	+	FALSE
chr17	60522252	G	A	0.00187	METTL2A	+	FALSE
chr3	40577755	A	G	0.00044	ZNF621	+	TRUE	AluSz	SINE,Alu
chr1	33149414	A	G	5.81443E-05	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	200375404	T	G	0.00030	ZNF281	-	FALSE
chr1	6282237	T	C	0.00372	ICMT	-	TRUE	AluSz	SINE,Alu
chr5	180669695	T	C	0.00101	RACK1	-	TRUE	AluSx1	SINE,Alu
chr3	156259299	T	C	0.00097	SSR3	-	TRUE	AluSq2	SINE,Alu
chr2	37429627	A	G	7.56792E-05	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	20977913	T	G	0.00201	PINK1,PINK1-AS	+,-	FALSE
chr3	49051841	C	A	0.00132	WDR6	+	FALSE
chr1	77759578	A	G	0.00955	AK5	+	FALSE
chr1	145512944	A	G	0.00171	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	36602176	G	T	0.00017	TRAPPC3	-	FALSE
chr19	42375611	A	G	0.00426		.	FALSE	AluSx	SINE,Alu
chr1	25894472	C	G	0.00594	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr8	143744556	T	C	0.00586	JRK	-	TRUE	AluJr	SINE,Alu
chr1	173862270	G	C	0.00197		.	FALSE	AluSz6	SINE,Alu
chr1	144823139	G	A	0.00941	NBPF20,NBPF9	+	FALSE
chr19	9672465	T	C	0.00155		.	FALSE	AluJr	SINE,Alu
chr5	115166486	T	C	0.00122	ATG12	-	TRUE	AluJr	SINE,Alu
chr1	1595388	A	G	0.00135	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr2	230629138	C	T	0.00958	TRIP12	-	FALSE
chr1	179326278	A	G	0.00379	SOAT1	+	TRUE
chr1	35817022	T	A	0.00072	ZMYM4	+	FALSE
chr2	206986945	T	C	0.00414		.	FALSE	AluJr	SINE,Alu
chr4	89181431	T	C	5.21801E-05	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr1	20519808	G	A	0.00882	UBXN10	+	FALSE
chr6	74303531	T	C	0.00487	SLC17A5	-	TRUE	AluJr	SINE,Alu
chr3	195961254	C	T	0.00119		.	FALSE
chr1	78414329	G	A	0.00635	FUBP1	-	FALSE	A-rich	SINE,Alu
chr1	109793319	C	T	0.00027	CELSR2	+	FALSE
chr2	56611541	G	A	0.00521	CCDC85A	+	FALSE
chr1	10043504	A	G	0.00213	NMNAT1	+	FALSE	AluSx3	SINE,Alu
chr2	101893244	C	A	0.00332	RNF149	-	FALSE	(A)n	SINE,Alu
chr1	46164493	T	C	0.00330	IPP	-	TRUE	AluJb	SINE,Alu
chr4	25236017	T	C	0.00291	PI4K2B	+	FALSE
chr1	27992825	G	A	0.00192	IFI6	-	FALSE
chr1	36068295	T	C	0.00393	PSMB2	-	TRUE	AluSc	SINE,Alu
chr19	7085418	A	G	6.02730E-06	ZNF557	+	TRUE	AluJb	SINE,Alu
chr3	53260620	T	G	0.00069	TKT	-	FALSE
chr2	61416407	G	T	0.00041	USP34	-	FALSE	AluSc8	SINE,Alu
chr1	173869111	C	G	0.00221		.	FALSE
chr1	10518591	A	T	0.00030		.	FALSE
chr4	248840	A	G	0.00655	ZNF876P	+	TRUE	AluYk3	SINE,Alu
chr19	9672981	T	C	0.00041		.	FALSE	AluSx3	SINE,Alu
chr12	12618715	T	C	0.00714	BORCS5	+	FALSE
chr7	94060361	C	T	2.02320E-06	COL1A2	+	FALSE
chr2	118583874	C	G	0.00569	DDX18	+	FALSE
chr3	156258319	T	C	0.00012	SSR3	-	TRUE	AluYk3	SINE,Alu
chr3	42826041	T	G	5.78537E-12	HIGD1A	-	FALSE
chr1	64095111	A	G	0.00201	PGM1	+	FALSE
chr1	9161142	T	C	8.95302E-05		.	FALSE	AluSx	SINE,Alu
chr2	3592602	T	C	0.00076	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr1	116943511	T	C	0.00236	ATP1A1,ATP1A1-AS1	+,-	FALSE
chr1	26138358	C	T	0.00645	SEPN1	+	FALSE
chr1	202993198	C	A	0.00754	TMEM183A	+	FALSE
chr6	42856118	A	G	0.00743	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr5	121362874	A	G	0.00607	SRFBP1	+	TRUE	FRAM	SINE,Alu
chr14	105270478	G	T	0.00252	ZBTB42	+	FALSE
chr7	6501819	A	T	0.00037	KDELR2	-	FALSE
chr1	120839681	C	A	0.00125	FAM72B	+	FALSE
chr1	65330637	C	T	0.00251	JAK1	-	FALSE
chr2	100899665	G	A	0.00758	LONRF2	-	FALSE
chr3	15113655	T	C	0.00025	RBSN	-	TRUE	AluSz6	SINE,Alu
chr3	47036756	C	G	0.00091	NBEAL2	+	FALSE
chr3	112319504	T	C	0.00040	LINC01279	-	TRUE	AluJb	SINE,Alu
chr1	16912029	C	G	0.00177	NBPF1	-	FALSE
chr3	19992312	A	G	0.00798	RAB5A	+	FALSE
chr7	32908135	C	G	0.00076	KBTBD2	-	FALSE
chr1	6283434	T	C	0.00285	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	46093407	C	A	0.00700	GPBP1L1	-	FALSE	A-rich	SINE,Alu
chrX	24095285	A	G	0.00135	EIF2S3	+	TRUE	AluSx	SINE,Alu
chr17	61502460	T	A	0.00161	TANC2	+	FALSE
chr1	16889596	T	C	0.00640	NBPF1	-	TRUE
chr9	19376246	A	T	0.00298		.	FALSE
chr14	23795204	G	T	0.00938	BCL2L2-PABPN1,PABPN1	+	FALSE
chr1	156565049	A	C	0.00169	GPATCH4	-	FALSE
chr1	68624878	C	T	0.00465	GNG12-AS1,WLS	+,-	FALSE
chr1	11084103	T	A	0.00146	TARDBP	+	FALSE
chr1	206566195	C	T	0.00462	SRGAP2	+	FALSE
chr17	57279281	A	G	0.00918	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	32637063	C	T	0.00071	KPNA6	+	FALSE
chr5	125961426	A	G	0.00434	PHAX	+	TRUE	AluSz6	SINE,Alu
chr11	65404869	G	T	1.77375E-05	PCNX3	+	FALSE
chr1	24935369	A	G	0.00454	NCMAP	+	TRUE	AluJb	SINE,Alu
chr1	8045340	C	A	0.00059	PARK7	+	FALSE
chr1	31902343	T	C	1.48709E-05	SERINC2	+	FALSE
chr2	675831	G	T	0.00731	TMEM18	-	FALSE
chr2	32535568	A	G	0.00016		.	FALSE	MER8	SINE,Alu
chr7	36447345	A	T	0.00553	ANLN	+	FALSE
chr1	36386884	C	T	0.00590	AGO1	+	FALSE
chr4	177251290	G	A	0.00580	SPCS3	+	FALSE
chr1	120839682	A	G	0.00073	FAM72B	+	FALSE
chr1	9160975	T	C	0.00858		.	FALSE	AluJb	SINE,Alu
chr3	195963910	C	T	0.00149		.	FALSE
chr1	68940887	T	G	0.00293	DEPDC1	-	FALSE	MIR	SINE,Alu
chr1	28607959	C	A	0.00215	SESN2	+	FALSE
chr6	42856056	A	G	0.00602	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	108742632	C	T	0.00933	SLC25A24	-	FALSE
chr1	16641899	C	T	0.00213	FBXO42	-	FALSE
chr19	45406536	G	T	0.00518	TOMM40	+	FALSE
chr15	41597559	A	G	0.00127		.	FALSE	AluSz6	SINE,Alu
chr1	23884661	G	A	0.00205	ID3	-	FALSE
chr1	145281633	C	A	0.00022	NBPF20,NOTCH2NL	+	FALSE
chr20	25428669	A	G	0.00023	GINS1	+	TRUE	AluJb	SINE,Alu
chr1	201846616	C	G	0.00209	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	68167217	G	T	0.00036	GNG12	-	FALSE
chr1	116947396	A	G	0.00226	ATP1A1,ATP1A1-AS1	+,-	FALSE
chr1	145500933	C	T	0.00982	NBPF20,NBPF10,LIX1L	+	FALSE
chr4	25279508	G	A	3.42130E-11	PI4K2B	+	FALSE
chr1	35647099	A	G	0.00092	SFPQ	-	FALSE
chr2	99812857	A	G	0.00040	MRPL30	+	TRUE	AluJb	SINE,Alu
chr2	37429532	A	G	0.00014	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	169824104	G	A	0.00744	SCYL3	-	FALSE
chr1	16717888	G	A	0.00206	SZRD1	+	FALSE
chr1	16890672	G	A	0.00142	NBPF1	-	FALSE
chr1	184762676	T	C	0.00720	FAM129A	-	TRUE	AluSz	SINE,Alu
chr12	69237020	A	G	0.00378	MDM2	+	TRUE
chr5	149829076	G	C	0.00288	RPS14	-	FALSE
chr19	19791273	A	G	0.00121	ZNF101	+	TRUE	AluSq2	SINE,Alu
chrX	77083672	T	C	2.97227E-07	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr1	1650801	T	C	0.00827	CDK11B,CDK11A	-	FALSE
chr1	212587320	T	C	0.00023	TMEM206	-	FALSE
chr2	129024408	G	A	0.00502	HS6ST1	-	FALSE
chr1	33148251	A	G	0.00389	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	6583515	T	C	0.00528	NOL9	-	TRUE	AluSq	SINE,Alu
chr5	6668842	C	T	4.46208E-05	SRD5A1	+	FALSE
chr7	140153699	C	A	0.00075	MKRN1	-	FALSE
chr2	209221291	T	G	0.00033	PIKFYVE	+	FALSE	AluSx	SINE,Alu
chr1	246714587	G	A	0.00150	TFB2M	-	FALSE
chr1	10093749	T	C	0.00521	UBE4B	+	FALSE
chr22	18571345	A	G	0.00113	PEX26	+	TRUE	AluSz	SINE,Alu
chr1	200589813	C	A	1.20032E-05	KIF14	-	FALSE
chr1	33149486	A	G	5.00374E-05	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr14	74431191	A	G	0.00670	ENTPD5	-	FALSE
chr2	37330435	T	C	3.14905E-06		.	FALSE	AluSq2	SINE,Alu
chr1	115275398	T	G	0.00474	CSDE1	-	FALSE
chr5	52388460	A	T	0.00034	ITGA2	+	FALSE
chr16	10623688	T	C	0.00766	EMP2	-	TRUE	AluSp	SINE,Alu
chr5	81571876	A	T	0.00092	RPS23	-	FALSE
chr2	24223256	A	G	0.00711	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr14	19686329	G	A	0.00117	DUXAP10	+	FALSE
chr3	155660961	A	G	6.62819E-05		.	FALSE	AluSz	SINE,Alu
chr1	19586501	A	G	0.00055	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	25894464	G	A	0.00527	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr2	37331038	T	C	0.00261		.	FALSE	AluSx1	SINE,Alu
chr5	68426312	G	A	0.00344	SLC30A5	+	FALSE
chr1	76255228	G	A	0.00073	RABGGTB,SNORD45B	+	FALSE
chr1	16932495	A	C	0.00385	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr11	93466866	G	T	0.00559	MIR1304	-	FALSE	AluJr	SINE,Alu
chr1	40537942	A	C	0.00955	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	45975345	A	G	0.00071	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	200375846	G	T	0.00040	ZNF281	-	FALSE	(T)n	SINE,Alu
chr1	67874540	T	C	0.00555	SERBP1	-	FALSE
chr6	8014786	T	C	0.00086	BLOC1S5-TXNDC5,BLOC1S5,EEF1E1-BLOC1S5	-	TRUE	AluSz	SINE,Alu
chr1	212114666	C	G	0.00858	INTS7	-	FALSE
chr12	121772025	T	C	0.00562	ANAPC5	-	TRUE	AluJr	SINE,Alu
chr3	113370193	C	T	4.09251E-05	USF3	-	FALSE	UCON34	SINE,Alu
chr1	28833494	G	A	0.00901	SNHG3,RCC1	+	FALSE
chr12	10311392	T	C	0.00177	OLR1	-	FALSE
chr1	143189473	C	A	0.00626	LOC102723769	-	FALSE
chr1	16912014	A	C	0.00702	NBPF1	-	FALSE
chr1	82453022	A	G	0.00532	ADGRL2	+	FALSE
chr2	191799592	A	G	2.07606E-11	GLS	+	TRUE
chr1	144595935	G	A	0.00359	NBPF20	+	FALSE	AluJb	SINE,Alu
chr5	148382005	C	A	8.42472E-06	SH3TC2	-	FALSE
chr14	75202412	A	G	5.03546E-10	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	217688165	C	A	0.00343	GPATCH2	-	FALSE
chr1	145688973	A	G	0.00283	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr5	125961648	A	G	4.28370E-08	PHAX	+	FALSE	AluSz6	SINE,Alu
chr15	85185502	T	C	0.00058	WDR73,SCAND2P	+,-	FALSE	AluSc	SINE,Alu
chr2	8998555	G	A	0.00584	MBOAT2	-	FALSE
chr6	38140505	A	G	0.00109	BTBD9	-	FALSE
chr3	176742501	G	A	0.00707	TBL1XR1	-	FALSE	(A)n	SINE,Alu
chr1	150704633	T	C	1.58455E-05	CTSS	-	TRUE	AluJo	SINE,Alu
chr5	141691248	C	T	0.00360	SPRY4	-	FALSE
chr1	6583138	T	C	0.00010	NOL9	-	TRUE	AluSx4	SINE,Alu
chr1	16133912	T	C	0.00126	UQCRHL	-	TRUE
chr4	56295160	T	A	0.00187	CLOCK	-	FALSE	(T)n	SINE,Alu
chr3	124488267	G	A	3.46260E-06	ITGB5	-	FALSE
chr4	39552022	T	C	0.00840	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr20	25427823	A	G	0.00054	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	67874689	T	C	7.42611E-10	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	220231982	T	C	0.00328	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	17998	C	T	0.00194	WASH7P	-	FALSE
chr2	128620437	T	A	0.00388	AMMECR1L	-	FALSE
chr15	93568295	G	A	0.00225	CHD2	+	FALSE
chr1	111682307	G	C	5.71833E-05	DRAM2,CEPT1	+,-	FALSE
chr1	16893813	A	G	0.00255	NBPF1	-	FALSE
chr4	113197769	T	C	0.00101	TIFA	-	FALSE
chr2	201774264	T	C	0.00099		.	FALSE	AluSz	SINE,Alu
chr1	28824065	C	T	0.00345	PHACTR4	+	FALSE
chr3	141668758	T	C	2.84489E-05	TFDP2	-	TRUE	AluSz	SINE,Alu
chr1	86118417	T	G	0.00211	ZNHIT6	-	FALSE
chr1	117531621	A	G	0.00577	PTGFRN	+	FALSE
chr3	15112612	T	C	0.00634	RBSN	-	TRUE	AluSq2	SINE,Alu
chr10	120795222	A	T	0.00193	EIF3A	-	FALSE
chr2	234749258	T	C	0.00710	HJURP	-	FALSE
chr1	164820482	T	A	0.00045	PBX1	+	FALSE
chr1	145513031	A	G	0.00713	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu

RBP	ZMAT4
Knock-Method	siRNA
RBP Family	zf-met
Biosample Name	MCF7
Tissue Type	Breast
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	GEO
Profile ID	GSE79586
Platform	GPL167891
Pubmed ID	28813674

ZMAT4 - Target Gene Network