RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	87811103	T	G	0.00028	LMO4	+	FALSE
chr1	108113839	T	C	1.78857E-05	VAV3	-	FALSE
chr1	10517314	T	C	0.00802		.	FALSE	AluJr	SINE,Alu
chr5	102345546	A	C	0.00463	PAM	+	FALSE
chr14	69708241	G	A	0.00748	EXD2	+	FALSE
chr1	19543457	T	C	0.00101	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr11	65764470	T	C	0.00435	EIF1AD	-	TRUE	AluSz6	SINE,Alu
chr12	125511958	A	G	0.00010	THRIL	-	FALSE	AluSx1	SINE,Alu
chr2	24224040	A	G	0.00882		.	FALSE	AluSp	SINE,Alu
chr1	10519932	T	C	0.00710		.	FALSE	AluJr	SINE,Alu
chr1	70718276	G	T	0.00836		.	FALSE
chr1	9160963	T	C	0.00098		.	FALSE	AluJb	SINE,Alu
chr6	42857028	A	G	0.00064	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr5	150869672	A	T	0.00755	SLC36A1	+	FALSE
chr8	133837579	G	A	0.00019	PHF20L1	+	FALSE	A-rich	SINE,Alu
chr1	226333560	A	T	0.00339	ACBD3	-	FALSE	(CAAAA)n	SINE,Alu
chr1	24864008	A	G	0.00601		.	FALSE
chr1	11084105	T	A	0.00116	TARDBP	+	FALSE
chr1	100549600	G	T	0.00181	SASS6	-	FALSE
chr6	43747964	G	A	0.00542	VEGFA	+	FALSE
chr14	21929014	T	C	0.00749	RAB2B	-	TRUE	AluSp	SINE,Alu
chr1	6282236	T	C	0.00388	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	13936953	C	T	0.00515	PDPN	+	FALSE
chr4	57194712	A	C	0.00399	KIAA1211	+	FALSE
chr1	6311399	A	G	0.00126	GPR153	-	FALSE
chr1	53289892	A	G	0.00079	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr15	44751350	C	T	0.00260	CTDSPL2	+	FALSE
chr2	178086785	C	A	0.00808	HNRNPA3	+	FALSE
chr2	203741640	T	C	0.00419		.	FALSE	AluJr	SINE,Alu
chr10	75008817	T	C	1.29877E-10	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	63790503	T	C	0.00289	FOXD3	+	FALSE
chr17	10578246	A	G	0.00093		.	FALSE
chr12	133298349	A	G	2.42844E-07	PGAM5	+	TRUE	AluSp	SINE,Alu
chrX	123047170	A	G	0.00855	XIAP	+	FALSE	AluSx	SINE,Alu
chr1	1653093	A	G	0.00768	CDK11B,CDK11A	-	FALSE	L2	SINE,Alu
chr1	28836872	A	G	0.00019	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr1	36068370	T	C	4.62049E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr8	95805070	A	G	0.00721	DPY19L4	+	TRUE	AluYf1	SINE,Alu
chr1	28835937	A	G	0.00061	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr2	75887834	T	C	0.00024	MRPL19	+	FALSE	L1MB4	SINE,Alu
chr1	63924020	C	T	0.00945	ITGB3BP	-	FALSE
chr1	45671434	G	C	0.00819	ZSWIM5	-	FALSE
chr3	196659892	T	G	0.00620	SENP5	+	FALSE	AluSz	SINE,Alu
chr4	95586725	T	A	0.00743	PDLIM5	+	FALSE
chr2	39009425	A	G	0.00607		.	FALSE	AluSx3	SINE,Alu
chr2	37331565	T	C	0.00121		.	FALSE	AluJb	SINE,Alu
chr7	6501829	T	A	0.00081	KDELR2	-	FALSE
chr1	65299551	G	T	0.00292	JAK1	-	FALSE
chr6	29704336	G	A	0.00207		.	FALSE	L1ME3A	SINE,Alu
chr9	137330713	T	G	0.00021	RXRA	+	FALSE
chr4	17804847	T	C	0.00512	DCAF16	-	TRUE	AluSx	SINE,Alu
chr2	128602974	A	T	4.23982E-05		.	FALSE	AluSp	SINE,Alu
chr1	179041693	T	C	0.00845	FAM20B	+	FALSE
chr4	79447807	G	C	0.00339	FRAS1	+	FALSE
chr2	72968440	T	A	0.00138	EXOC6B	-	FALSE
chr17	65334886	T	C	8.05380E-09	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	38279683	A	T	0.00685	MTF1	-	FALSE
chr17	42876398	T	C	0.00697	GJC1	-	FALSE	AluSz6	SINE,Alu
chr6	42856905	A	G	4.80826E-12	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr6	24720534	T	C	0.00053		.	FALSE
chr7	158525786	G	A	0.00453	ESYT2	-	FALSE
chr3	172115466	T	A	0.00875	FNDC3B	+	FALSE
chr17	30327115	C	T	0.00522	SUZ12	+	FALSE
chr1	179325847	A	G	7.26692E-05	SOAT1	+	TRUE	AluJo	SINE,Alu
chr3	160213318	T	G	0.00215	KPNA4	-	FALSE
chr22	36883967	T	C	0.00051	FOXRED2	-	TRUE	AluSq2	SINE,Alu
chr1	39305002	A	T	0.00089	RRAGC	-	FALSE
chr1	16932968	G	A	0.00074	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	13942884	A	C	0.00016	PDPN	+	FALSE
chr2	99812978	A	G	0.00167	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	28564195	T	C	0.00113	ATPIF1	+	FALSE
chr1	10519910	T	C	7.27344E-07		.	FALSE	AluJr	SINE,Alu
chr1	53288862	A	G	0.00503	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr17	4928416	A	G	0.00941	KIF1C	+	TRUE	AluSz	SINE,Alu
chr1	67874697	T	C	4.44446E-05	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	10517290	T	C	0.00060		.	FALSE	AluJr	SINE,Alu
chr1	40537924	G	A	0.00404	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	6314743	C	T	0.00615	GPR153	-	FALSE
chr1	10518733	T	C	0.00399		.	FALSE	AluSx1	SINE,Alu
chr1	6282587	T	C	7.24363E-07	ICMT	-	TRUE
chr1	20978294	T	A	0.00985	PINK1-AS,DDOST	-	FALSE
chr1	145513016	A	G	0.00400	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr2	201253956	A	G	0.00071	SPATS2L	+	FALSE
chr1	36068325	T	C	0.00746	PSMB2	-	TRUE	AluSc	SINE,Alu
chr8	11701343	T	C	0.00280	CTSB	-	TRUE	AluSx1	SINE,Alu
chr2	88327464	C	T	0.00046	KRCC1	-	FALSE
chr1	76253041	T	A	0.00646	RABGGTB	+	FALSE
chr1	24022914	A	G	0.00347	RPL11	+	FALSE
chr1	26755643	A	G	0.00955	LIN28A	+	FALSE	AluSc	SINE,Alu
chr4	761932	G	A	0.00827	PCGF3	+	FALSE
chr8	22111410	A	G	0.00396		.	FALSE	AluSz	SINE,Alu
chr5	180682612	A	T	0.00235	CTC-338M12.4	+	FALSE
chr1	27182751	C	A	0.00122		.	FALSE
chr1	16901668	T	C	0.00177	NBPF1	-	FALSE
chr19	50410816	G	T	0.00050	IL4I1,NUP62	-	FALSE	AluSz	SINE,Alu
chr1	32688036	A	T	0.00265	EIF3I	+	FALSE
chr1	1634860	G	T	0.00659	CDK11B,CDK11A	-	FALSE
chr2	201842492	T	C	0.00107	FAM126B	-	TRUE	AluJb	SINE,Alu
chr1	145688665	T	A	0.00015	NBPF20,NBPF10,RNF115	+	FALSE
chr5	79279310	T	A	0.00173	MTX3	-	FALSE
chr1	10517352	T	C	0.00050		.	FALSE	AluJr	SINE,Alu
chr5	176728458	G	T	0.00901	RAB24	-	FALSE
chr12	100562932	G	T	0.00079	GOLGA2P5	-	FALSE	AluSg	SINE,Alu
chr9	37503313	A	G	0.00584	POLR1E	+	TRUE	AluJb	SINE,Alu
chr1	179326588	A	G	0.00563	SOAT1	+	TRUE	AluSg	SINE,Alu
chr6	3021352	T	C	0.00082	HTATSF1P2	-	TRUE	AluJr4	SINE,Alu
chr1	28661576	A	G	0.00625	MED18	+	TRUE	AluSg	SINE,Alu
chr3	197612334	A	G	0.00070		.	FALSE	AluSp	SINE,Alu
chr8	30536146	T	C	1.15312E-06	GSR	-	TRUE	AluJr	SINE,Alu
chr12	46577921	G	T	0.00306	SLC38A1	-	FALSE
chr5	74063154	C	G	0.00255	GFM2,NSA2	+,-	FALSE
chr2	87821033	C	A	0.00474		.	FALSE
chr1	26450101	A	G	0.00764	PDIK1L	+	FALSE
chr1	16957414	C	T	0.00708		.	FALSE
chr5	34189578	T	C	0.00378		.	FALSE
chr1	28864731	A	G	0.00477	RCC1	+	FALSE
chr2	207027628	A	G	0.00022	EEF1B2	+	FALSE
chr1	222906392	C	T	0.00804	BROX	+	FALSE	AluSx	SINE,Alu
chr1	27731933	C	A	1.77427E-09	WASF2	-	FALSE
chr1	28835934	A	G	0.00193	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	67874859	T	C	0.00071	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	24128467	C	T	0.00481	HMGCL	-	FALSE
chr1	35644504	A	T	0.00242	SFPQ	-	FALSE
chr6	44417136	A	G	0.00274	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr22	18571457	A	G	0.00493	PEX26	+	TRUE	AluSz	SINE,Alu
chr11	63724398	T	C	0.00664	NAA40	+	FALSE	AluSx	SINE,Alu
chr21	18940466	A	T	0.00169	CXADR	+	FALSE	AluY	SINE,Alu
chr1	25775374	C	T	0.00710	TMEM57	+	FALSE
chr1	16893686	G	C	0.00386	NBPF1	-	FALSE
chr1	1419130	A	G	0.00107	ATAD3B	+	FALSE	AluSz	SINE,Alu
chr6	44222158	T	A	0.00781	SLC35B2	-	FALSE
chr1	1431502	G	A	0.00127	ATAD3B	+	FALSE
chr12	125514122	A	G	1.22592E-05		.	FALSE	(TA)n	SINE,Alu
chr6	143832707	G	A	0.00418	FUCA2	-	FALSE	(GCA)n	SINE,Alu
chr2	27170943	A	C	0.00684	DPYSL5	+	FALSE	(CA)n	SINE,Alu
chr1	212535032	T	G	0.00028	PPP2R5A	+	FALSE
chr3	196660052	G	A	0.00200	SENP5	+	FALSE	AluSz	SINE,Alu
chr1	19586501	A	G	0.00288	MRTO4	+	TRUE	AluSz	SINE,Alu
chr6	42857067	A	G	0.00310	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr2	1652354	G	A	0.00114	PXDN	-	FALSE
chr14	23300642	C	A	0.00266	MRPL52	+	FALSE	MIRb	SINE,Alu
chr9	125887703	A	C	0.00067	STRBP	-	FALSE
chr3	183547227	T	C	7.80232E-05	PARL	-	FALSE
chr4	47514685	C	T	2.65771E-05	ATP10D	+	FALSE
chr1	24786	G	A	0.00285	WASH7P	-	FALSE
chr3	121435624	C	T	0.00063	GOLGB1	-	FALSE
chr1	28835937	A	G	0.00121	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr2	86251114	T	C	0.00709		.	FALSE	AluSx	SINE,Alu
chr7	6695426	G	T	0.00893	ZNF316	+	FALSE
chr2	77745788	T	C	0.00000	LRRTM4	-	FALSE
chr1	36067886	T	C	0.00925	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	149576483	G	A	0.00323	LINC00623,LINC00869,LOC103091866	+	FALSE
chr1	28662254	A	G	0.00505	MED18	+	TRUE	AluSq2	SINE,Alu
chr15	41597559	A	G	0.00127		.	FALSE	AluSz6	SINE,Alu
chr20	25427865	A	G	0.00018	GINS1	+	FALSE	AluSz	SINE,Alu
chr1	45976722	G	T	0.00292	MMACHC,PRDX1	+,-	FALSE
chr1	45975358	A	G	0.00339	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr19	53914448	A	G	0.00583	ZNF765	+	TRUE	AluSx	SINE,Alu
chr1	19543247	T	C	0.00870	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr8	11700231	T	C	1.53992E-05	CTSB	-	TRUE	AluSq2	SINE,Alu
chr1	28826150	A	G	0.00048	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr8	11700737	T	C	0.00126	CTSB	-	TRUE	AluSg	SINE,Alu
chr3	196555443	C	A	3.82991E-09	PAK2	+	FALSE
chr18	47919174	A	G	0.00820	SKA1	+	TRUE	AluYk4	SINE,Alu
chr1	33219771	G	C	0.00256	KIAA1522	+	FALSE
chr3	196557357	G	T	0.00615	PAK2	+	FALSE
chr1	58971831	G	A	0.00801	OMA1	-	FALSE
chr1	180854783	T	C	0.00292	XPR1	+	FALSE
chr1	155853061	A	G	0.00146	SYT11	+	TRUE	AluJb	SINE,Alu
chr4	141600320	A	G	0.00179	TBC1D9	-	FALSE
chr8	37351214	T	C	0.00109	LINC01605	-	FALSE
chr4	178281754	G	A	0.00057	NEIL3	+	FALSE
chr1	10520588	T	C	0.00341		.	FALSE	AluSc8	SINE,Alu
chr1	53288870	A	G	0.00501	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr2	29135468	C	G	0.00217	WDR43	+	FALSE
chr4	7765043	G	A	0.00071	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	33147928	A	G	9.58446E-05	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr2	224621887	T	C	0.00373	AP1S3	-	FALSE	AluSc	SINE,Alu
chr5	44819912	A	G	0.00176		.	FALSE	AluSz	SINE,Alu
chr5	74072638	G	A	0.00431	NSA2	+	FALSE
chr3	44790636	T	C	0.00083	KIAA1143	-	TRUE	AluY	SINE,Alu
chr4	68483513	G	A	3.54156E-05	UBA6	-	FALSE
chr2	101638888	A	G	0.00127	TBC1D8	-	FALSE
chr1	161338504	C	G	0.00343		.	FALSE
chr1	19542458	T	C	6.76498E-05	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr6	74304013	T	C	3.72993E-06	SLC17A5	-	TRUE	AluSx3	SINE,Alu
chr2	85772408	G	A	0.00278	GGCX	-	FALSE
chr5	61683960	A	G	0.00491		.	FALSE
chr1	95658346	T	A	0.00961	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr1	16912029	C	G	0.00177	NBPF1	-	FALSE
chr1	10520174	T	C	0.00163		.	FALSE	AluSx	SINE,Alu
chr2	234775941	A	G	0.00161	MSL3P1	-	FALSE
chr1	1534676	C	T	4.01953E-10	FNDC10	-	FALSE
chr2	64860431	T	G	0.00213	SERTAD2	-	FALSE
chr5	74072634	T	A	0.00187	NSA2	+	FALSE
chr8	48890109	A	G	0.00750	MCM4	+	TRUE	AluJb	SINE,Alu
chr1	53289759	A	G	0.00329	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr2	24494638	T	G	0.00495	ITSN2	-	FALSE	(TATCCT)n	SINE,Alu
chr2	109383604	G	A	0.00331	RANBP2	+	FALSE
chr1	145511929	A	G	0.00028	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr10	94414146	A	G	0.00911	KIF11	+	FALSE
chr6	109001948	G	A	0.00030	FOXO3	+	FALSE	(A)n	SINE,Alu
chr1	66058513	A	G	0.00091	LEPR	+	FALSE
chr2	99772813	A	G	1.48642E-06	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr1	230416038	G	A	0.00626	GALNT2	+	FALSE
chr20	35520976	T	C	0.00254	TLDC2,SAMHD1	+,-	FALSE	FLAM_A	SINE,Alu
chr1	155161736	G	A	0.00088	MUC1	-	FALSE
chr15	90819471	A	G	7.41591E-05		.	FALSE	AluSx	SINE,Alu
chr2	204162601	A	G	0.00032	CYP20A1	+	TRUE	AluSx	SINE,Alu
chrX	77083538	T	C	0.00055	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr2	198416734	A	T	0.00257	HSPE1-MOB4,MOB4	+	FALSE
chr3	182637840	C	T	1.61172E-05	ATP11B	+	FALSE
chr1	12677525	G	A	0.00122	DHRS3	-	FALSE	(A)n	SINE,Alu
chr9	136209396	C	T	0.00126	MED22	-	FALSE
chr1	144606963	G	T	0.00080	NBPF20	+	FALSE
chr2	37329369	T	C	0.00010		.	FALSE	AluJr4	SINE,Alu
chr2	206983115	T	C	0.00992		.	FALSE	AluJb	SINE,Alu
chr1	26603883	G	A	0.00660	CEP85	+	FALSE
chr2	103332887	T	A	0.00515	MFSD9	-	FALSE	L2d2	SINE,Alu
chr1	117530188	A	G	0.00199	PTGFRN	+	FALSE
chr1	9642830	T	A	0.00059	SLC25A33	+	FALSE
chr1	1252687	T	C	0.00459	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr5	6372180	C	T	0.00034	MED10	-	FALSE
chr12	51325349	C	G	0.00225	METTL7A	+	FALSE	AluSq2	SINE,Alu
chrX	3526613	C	T	0.00930	PRKX	-	FALSE
chr1	36530674	A	G	0.00603		.	FALSE	AluSg	SINE,Alu
chr1	235492546	T	G	0.00786	GGPS1	+	FALSE
chr1	20976174	T	C	0.00103	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr2	3607238	C	T	0.00222	RNASEH1-AS1	+	FALSE
chr1	46164493	T	C	0.00977	IPP	-	TRUE	AluJb	SINE,Alu
chr1	19543459	T	C	0.00074	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	28835847	A	G	5.60567E-05	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr2	17965699	C	T	0.00497	GEN1	+	FALSE	L1M4	SINE,Alu
chr6	47592459	A	G	0.00789	CD2AP	+	FALSE
chr3	125033835	T	G	0.00385	ZNF148	-	FALSE	AluJb	SINE,Alu
chr1	9163328	T	C	0.00150		.	FALSE	AluSp	SINE,Alu
chr17	42880118	T	C	0.00140	GJC1	-	TRUE	AluJb	SINE,Alu
chr14	50792933	C	T	0.00156	ATP5S	+	FALSE	AluSx	SINE,Alu
chr1	117945049	G	A	0.00030	MAN1A2	+	FALSE
chr1	110136329	G	T	0.00993	GNAI3	+	FALSE
chr15	42860107	A	G	0.00194	HAUS2	+	TRUE	AluSg	SINE,Alu
chr16	81420621	G	C	0.00214		.	FALSE	L3b	SINE,Alu
chr1	28662199	A	G	0.00138	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	225974645	A	G	0.00984	SRP9	+	TRUE	AluJr	SINE,Alu
chr1	42886523	T	C	0.00649	RIMKLA	+	FALSE	MIRc	SINE,Alu
chr1	53289860	A	G	0.00041	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr17	60522250	A	G	0.00267	METTL2A	+	FALSE
chr1	116239841	A	T	0.00069	VANGL1	+	FALSE
chr1	40147817	C	A	0.00982	HPCAL4	-	FALSE
chr1	93297595	G	T	0.00479	RPL5	+	FALSE
chr14	23300663	G	A	0.00120	MRPL52	+	FALSE	MIRb	SINE,Alu
chr1	144833382	C	T	0.00325	NBPF20	+	FALSE	L1MEc	SINE,Alu
chr1	205501469	A	G	0.00113	CDK18	+	FALSE
chr2	233446265	T	C	0.00177	EIF4E2	+	FALSE
chrX	77083548	T	C	0.00205	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr1	40982042	G	A	0.00330	EXO5	+	FALSE	AluSx	SINE,Alu

RBP	ZMAT4
Knock-Method	siRNA
RBP Family	zf-met
Biosample Name	T47D
Tissue Type	Breast
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	GEO
Profile ID	GSE79586
Platform	GPL167891
Pubmed ID	28813674

ZMAT4 - Target Gene Network