Dataset Overview
RBPZNF804A
Knock-MethodsiRNA
RBP Familyzf-C2H2_jaz
Biosample NameNPCs
Tissue TypeBrain
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceGEO
Profile IDGSE54112
PlatformGPL11154
Pubmed ID25905630

ZNF804A - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of ZNF804A
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of ZNF804A


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr116912014AC0.00702NBPF1-FALSE
chr1151372040AT0.00825.FALSE
chr271411975AC0.00463PAIP2B-FALSE
chr285548639AG0.00687TGOLN2-FALSE
chr1570178GA0.00787.FALSE
chr12113565TG0.00429PRKCZ+FALSE
chr1075008797TC0.00824DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr1689623623TC0.00740SPG7+FALSE
chr2152132130AG6.12116E-05NMI-FALSE
chr552251222GT0.00808.FALSE(GATA)nSINE,Alu
chr133148210AG0.00114SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr136068295TC0.00076PSMB2-TRUEAluScSINE,Alu
chr1145293566GA0.00103NBPF20,NBPF10+FALSE
chr152306075TC8.71211E-05NRDC-FALSE(TCA)nSINE,Alu
chr116889864CA0.00020NBPF1-FALSE
chr42940485TC2.93326E-08NOP14-AS1,NOP14+,-FALSEAluJoSINE,Alu
chr116112795AG0.00499FBLIM1+FALSE
chr220401856TG0.00263SDC1-FALSE
chr556559238TC0.00149GPBP1+FALSE
chr6158613393AT0.00108GTF2H5+FALSE
chr830536151TC5.90006E-09GSR-TRUEAluJrSINE,Alu
chr738763068TC0.00361.FALSEAluSx3SINE,Alu
chr1148561090GA0.00087NBPF15+FALSE
chr1143189473CA0.00626LOC102723769-FALSE
chr830535980TC0.00038GSR-TRUEAluJrSINE,Alu
chr43769307CA0.00173ADRA2C+FALSE
chr286731290TC0.00149CHMP3,RNF103-CHMP3-FALSEL1MC1SINE,Alu
chr1320211AG6.69717E-05.FALSEAluJoSINE,Alu
chr6160113872AG0.00863SOD2-FALSE
chr1200521297CT0.00133KIF14-FALSE(T)nSINE,Alu
chr120978024CA0.00175PINK1-AS-FALSE
chr116921146TC0.00382NBPF1-FALSE
chr1144909956GA0.00310NBPF20,PDE4DIP+,-FALSE
chr1206579936AG0.00747SRGAP2+FALSE
chr7102119322TC0.00834POLR2J-FALSE
chr744917351TC0.00338PURB-TRUEAluSzSINE,Alu
chr1145273431AG7.55666E-05NBPF20,NOTCH2NL+FALSE
chr119542401TC0.00077LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr642854580AG0.00330RPL7L1+TRUEAluScSINE,Alu
chr129041856AG0.00756GMEB1+TRUEAluSq4SINE,Alu
chr1765335316TC0.00296PSMD12-TRUEAluSxSINE,Alu
chr2128602967TG0.00026.FALSEAluSpSINE,Alu
chr774169234GT8.95897E-05GTF2I+FALSE
chr1158057633CG0.00031KIRREL+FALSE
chr457326262AG2.33397E-05PAICS+TRUEAluJrSINE,Alu
chr3113604709TC0.00012GRAMD1C+FALSE
chr110517623TC0.00664.FALSEAluSx1SINE,Alu
chr2242384368GA0.00096FARP2+FALSEAluJrSINE,Alu
chr133149338AG0.00367SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr1269160574AG0.00891.FALSEAluJbSINE,Alu
chr1610625075TC2.22045E-15EMP2-TRUEAluSx3SINE,Alu
chr540830064TC0.00554.FALSEAluSpSINE,Alu
chr1149783886CT0.00526HIST2H2BF-FALSE
chr2010036845AG0.00110SNAP25-AS1,ANKEF1+,-FALSE
chr3152883475AT0.00384RAP2B+FALSE
chr1148595665AG0.00378NBPF15+TRUEL1MC4SINE,Alu
chr1742876808TC0.00147GJC1-TRUEAluSz6SINE,Alu
chr165901227AT0.00914LEPR,LEPROT+FALSEAluYh3SINE,Alu
chr120826781CT9.86003E-06MUL1-FALSE
chr1101541172AG6.48917E-05LOC102606465+TRUEMLT1KSINE,Alu
chr1206635244TA0.00195SRGAP2+FALSE
chr1179044252AG0.00801FAM20B+TRUEAluSxSINE,Alu
chr2025428587AG0.00137GINS1+TRUEAluJbSINE,Alu
chr110042987AG0.00149NMNAT1+TRUEAluScSINE,Alu
chr2237962318TC0.00884CDC42EP1+FALSE
chr5130537998AG0.00380LYRM7+TRUEAluSpSINE,Alu
chr349142142GT6.70614E-05QARS-FALSE
chr1148556753GA0.00472.FALSE
chr136534939AG0.00936.FALSEAluJoSINE,Alu
chr136067752TC5.48772E-07PSMB2-TRUEAluSzSINE,Alu
chr138280611GT0.00955MTF1-FALSE(T)nSINE,Alu
chr388104167TC0.00919CGGBP1-FALSE
chr1186321189AG0.00010TPR-FALSE
chr110517276TC0.00079.FALSEAluJrSINE,Alu
chr19732611TC0.00321PIK3CD,PIK3CD-AS2+,-FALSEAluJoSINE,Alu
chr122186113TG0.00083HSPG2-FALSE
chr11126147713CG0.00384FOXRED1+FALSE
chr1225360465GA0.00074KRAS-FALSE
chr146075168CA0.00155NASP+FALSEA-richSINE,Alu
chr2201774393TC0.00971.FALSEAluSzSINE,Alu
chr237330614TC0.00410.FALSEAluSq2SINE,Alu
chr7286402AG1.78989E-09FAM20C+FALSE
chr3128338880TA0.00828RPN1-FALSE
chr1860998527CG0.00078KDSR-FALSE(AGAGAGAC)nSINE,Alu
chr238522141GT0.00109ATL2-FALSE
chr5180682604AT0.00037CTC-338M12.4+FALSE
chr11118620064AG0.00192DDX6-FALSE(A)nSINE,Alu
chr1112003957GA0.01000ATP5F1+FALSEHelitron2Na_MamSINE,Alu
chr1203277243GT1.60795E-05BTG2+FALSE
chr642856330AG2.22045E-16RPL7L1+TRUE
chr116910172GA0.00085NBPF1-FALSE
chr1205683408CT0.00082NUCKS1-FALSE
chr3160213318TG0.00215KPNA4-FALSE
chr3124732406CA0.00975HEG1-FALSE
chr72278515TC0.00937MRM2-TRUEAluSx1SINE,Alu
chr110520296TC0.00108.FALSEAluSxSINE,Alu
chr764435683TA0.00239ZNF117-FALSE
chr3195963395AG0.00028.FALSE
chr1075008817TC1.29877E-10DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr643747964GA0.00542VEGFA+FALSE
chr11252309AT0.00403CPSF3L-FALSEAluSxSINE,Alu
chr127992799TA0.00014IFI6-FALSEFAMSINE,Alu
chr5149781426AG0.00977CD74-FALSE
chr1423795222TG0.00162BCL2L2-PABPN1,PABPN1+FALSE
chr1244572644GC0.00033ADSS-FALSE
chr167874705TC0.00015SERBP1-TRUEAluSx3SINE,Alu
chr1761909370GA0.00152PSMC5+FALSE
chr1045499895GA0.00255ZNF22+FALSE
chr345722381AG0.00996LIMD1,LIMD1-AS1+,-FALSEAluSzSINE,Alu
chr10117823566GT0.00433GFRA1-FALSE(ATC)nSINE,Alu
chr345721990AG0.00022LIMD1,LIMD1-AS1+,-FALSEAluJbSINE,Alu
chr1468144079GT0.00974RDH11-FALSE
chr19161142TC8.95302E-05.FALSEAluSxSINE,Alu
chr1918047216CA0.00113CCDC124+FALSE
chr116933638GA4.07227E-05NBPF1-FALSEGA-richSINE,Alu
chr5149829075AG0.00277RPS14-FALSE
chr1144881463CT0.00147NBPF20,PDE4DIP+,-FALSE
chr265496075CT0.00972ACTR2+FALSE
chr133150643GA0.00606SYNC,RBBP4+,-FALSEAluJoSINE,Alu
chr1280168993GT0.00513PPP1R12A-FALSE
chr388199298TC0.00048C3orf38+FALSE
chr2233257176AG0.00930SYN3,TIMP3+,-FALSE
chr19160900TC0.00542.FALSEAluJbSINE,Alu
chr1200589813CA0.00034KIF14-FALSE
chr146764013GA0.00224LRRC41-FALSE
chr340578997AG0.00094ZNF621+TRUEAluJrSINE,Alu
chr2134730010AG0.00518IFNAR1+TRUEAluSg7SINE,Alu
chr16684050GA2.21294E-05PHF13+FALSE
chr1060157509TG0.00296TFAM+FALSE
chr1144607387GC0.00016NBPF20+FALSE
chr210198113CA0.00893CYS1-FALSE
chr152306082AT0.00038NRDC-FALSE(TCA)nSINE,Alu
chr110519947TC0.00184.FALSEAluJrSINE,Alu
chr1144932199CA0.00584NBPF20,PDE4DIP+,-FALSE
chr4187509420GA0.00121FAT1-FALSE
chr1338936619GT0.00212UFM1+FALSE
chr8144940368CT0.00020EPPK1-FALSE
chr398307696TG3.25383E-09CPOX-FALSE
chr320025661CT4.83976E-05RAB5A,PP2D1+,-FALSE
chr4152583924AT0.00284FAM160A1+FALSE
chr1179044212AG7.62870E-06FAM20B+TRUEAluSxSINE,Alu
chr1073994170AG0.00218ANAPC16+TRUEAluJrSINE,Alu
chr116932783GC0.00843NBPF1-FALSEL1MC2SINE,Alu
chr11252723TC0.00367CPSF3L-TRUEAluSpSINE,Alu
chr13730400TC0.00800CEP104-TRUEAluSx3SINE,Alu
chr126755643AG0.00068LIN28A+FALSEAluScSINE,Alu
chr1911256626TC1.61091E-07SPC24-TRUEAluJr4SINE,Alu
chr12125269475TC0.00184SCARB1-FALSE
chr2217366534AG0.00733.FALSEAluSzSINE,Alu
chr8103841636TC2.19081E-06AZIN1-TRUE
chr1298942808AG0.00019TMPO+TRUEAluScSINE,Alu
chr7129472335TC0.00420UBE2H-FALSE(CA)nSINE,Alu
chr1919792345AG0.00272ZNF101+TRUEAluJbSINE,Alu
chr187573349CG0.00914HS2ST1+FALSE
chr171532815GA0.00712ZRANB2-AS1,ZRANB2+,-FALSE
chr2217366919AG0.00615.FALSEAluSz6SINE,Alu
chr1143467373TC0.00182.FALSE
chr127205224TC0.00353.FALSEAluScSINE,Alu
chr1109475572AG0.00096GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr139470978TA0.00378AKIRIN1+FALSEAluSx1SINE,Alu
chr1110566328AT0.00515AHCYL1+FALSE
chr1225678910TC2.51322E-05ENAH-TRUEAluSx1SINE,Alu
chr16314822TC0.00300GPR153-FALSE
chr128261661GA0.00872SMPDL3B+FALSE
chr314526648TG9.03719E-05SLC6A6+FALSE
chr2183642652GA0.00309DNAJC10+FALSE
chr579923360TC0.00727DHFR-TRUEAluJrSINE,Alu
chr2216903544TC0.00929PECR-TRUEAluSx3SINE,Alu
chr116889563CA0.00090NBPF1-FALSE
chr131732601AT0.00479SNRNP40-FALSE
chr12133298339AG1.45756E-07PGAM5+TRUEAluSpSINE,Alu
chr178414329GA0.00785FUBP1-FALSEA-richSINE,Alu
chr16282237TC0.00455ICMT-TRUEAluSzSINE,Alu
chr1179852074TC0.00033TOR1AIP1+FALSE
chr1946053316TC4.53847E-05OPA3-TRUEAluSx1SINE,Alu
chr192917287CA0.00243ZNF57+FALSE
chr254896390GT0.00110SPTBN1+FALSE
chr261276750AG0.00231PEX13+TRUEAluSpSINE,Alu
chr116890428TA0.00233NBPF1-FALSE
chr11650797AG0.00798CDK11B,CDK11A-FALSE
chr19162224TC0.00372.FALSEAluSxSINE,Alu
chr119545147TG0.00510LOC101927895,EMC1+,-FALSE
chr1220323448CT0.00223RAB3GAP2-FALSE
chr442088291CA0.00000SLC30A9+FALSE
chr128218100TC0.00080RPA2-FALSE
chr1145688672AT0.00770NBPF20,NBPF10,RNF115+FALSE
chr285132775CG7.25564E-06TMSB10+FALSE
chr9131457814GA0.00021SET+FALSE
chr136531942AG0.00042.FALSEAluSq2SINE,Alu
chr116889423GC6.70783E-10NBPF1-FALSEL1MC4SINE,Alu
chr237331525TC0.00140.FALSEAluJbSINE,Alu
chr1201846632CT7.46598E-05IPO9+FALSE(CA)nSINE,Alu
chr324019990AG0.00308NR1D2+FALSE
chr121070406CA0.00671HP1BP3-FALSEAluSxSINE,Alu
chr1118066724AT0.00979MAN1A2+FALSE
chr19161231TC5.02708E-05.FALSEAluSxSINE,Alu
chr2109301897TC0.00306LIMS1+FALSE
chr1155403831AG0.00676ASH1L,POU5F1P4+,-FALSE
chr1220231959TC0.00464RNU5F-1,BPNT1+,-FALSEAluSzSINE,Alu
chr116907328GT0.00099NBPF1-FALSE
chr7100739267GA0.00654.FALSEAluSxSINE,Alu
chr1957816261AG0.00156.FALSEAluYSINE,Alu
chr1145688983AG0.00101NBPF20,NBPF10,RNF115+TRUEAluSc8SINE,Alu
chr1779529443TC0.00153NPLOC4-TRUEAluSx1SINE,Alu
chr1148556753GA0.00272.FALSE
chr317201882CT0.00282TBC1D5-FALSE
chr110520378TC8.57705E-06.FALSEAluSx1SINE,Alu
chr6126661502GT0.00873CENPW+FALSE
chr116892918TC0.00590NBPF1-FALSE
chr159147926TC0.00601MYSM1-FALSE
chr116889414TC0.00858NBPF1-TRUEL1MC4SINE,Alu
chr3170113815GT0.00586SKIL+FALSE
chr314986137TC1.37684E-08FGD5-AS1-TRUEFLAM_CSINE,Alu
chr540982394CT0.00037C7+FALSEAluSx1SINE,Alu
chr1205686522GT0.00427NUCKS1-FALSE
chr1062554474TG6.65730E-05CDK1+FALSE
chr592956173CT0.00646FAM172A-FALSE
chr1175116737GA0.00774RPS3+FALSE
chr11650832AG0.00407CDK11B,CDK11A-FALSE
chr1167759281TC0.00923MPZL1+FALSE
chr11717502TG0.00239GNB1-FALSE
chr1569874CT0.00072.FALSE
chr192946618AG0.00062GFI1-FALSE
chr193307479CA0.00085FAM69A,RPL5+,-FALSE
chr1674655591TG0.00652RFWD3-FALSEAluSxSINE,Alu
chr16582868TC0.00368NOL9-TRUEAluSgSINE,Alu
chr347554503TG0.00720ELP6-FALSEAluSxSINE,Alu
chr350150360AG0.00827RBM5+TRUEAluSxSINE,Alu
chr16283548AG0.00286ICMT-FALSE
chr2172178588TC0.00248METTL8-TRUEAluSx3SINE,Alu
chr16282237TC0.00771ICMT-TRUEAluSzSINE,Alu
chr812880381AG0.00031KIAA1456+TRUEAluJoSINE,Alu
chr1145511929AG0.00023NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr153291382AG0.00132ZYG11B+TRUEAluJrSINE,Alu
chr5172396725TA0.00014RPL26L1+FALSE
chr6132617374CG0.00062MOXD1-FALSE
chr5114951140TG0.00761TMED7-TICAM2,LOC101927100,TMED7+,-FALSE
chr1244571947CT0.00775ADSS-FALSE
chr1910795968CT0.00700ILF3+FALSE
chr119543353TC0.00036LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1450792966AT0.00852.FALSEAluSxSINE,Alu
chr136032230CA0.00297NCDN+FALSE
chr363996230AT0.00309PSMD6-AS2,PSMD6+,-FALSE
chr4144442611TC0.00899SMARCA5+FALSE
chr438946481AG0.00168FAM114A1+FALSEMER1BSINE,Alu
chr12109887765TG0.00091KCTD10-FALSE
chr3178978648GA0.00479KCNMB3-FALSE
chr2232328545CT0.00581NCL-FALSE
chr2220416967CT0.00300OBSL1-FALSE
chr11345006AG1.26297E-06.FALSEAluSgSINE,Alu
chr596372165GA0.00149.FALSE
chr1171561859AT0.00439PRRC2C+FALSE
chr119684006GC0.00396CAPZB-FALSE
chr1169101273TG0.00522ATP1B1+FALSE(T)nSINE,Alu
chr830536143TC0.00883GSR-TRUEAluJrSINE,Alu
chr1234561498TC2.33971E-05TARBP1-FALSE
chr1145693958AG3.55543E-06NBPF20,NBPF10+TRUEAluSzSINE,Alu
chr1144596446AG0.00124NBPF20+TRUEAluJbSINE,Alu
chr144088112GT0.00822PTPRF+FALSE(T)nSINE,Alu
chr1757281098AG0.00181PRR11+TRUEAluSzSINE,Alu
chr441956313AG0.00710TMEM33+FALSE
chr19643028AG0.00017.FALSEAluSxSINE,Alu
chr1610623706TC0.00064EMP2-TRUEAluSpSINE,Alu
chr1144053663AT0.00155.FALSE
chr1246931057AG0.00048SCCPDH+FALSE
chr159142713TC0.00078MYSM1-FALSE
chr1251325280AG0.00370METTL7A+TRUEAluSq2SINE,Alu
chr2178084651AG1.09207E-09HNRNPA3+FALSE
chr1144823139GA0.00941NBPF20,NBPF9+FALSE
chr1145511998AG0.00675NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr124022912GA4.29449E-05RPL11+FALSE
chr116932144AC7.50683E-06NBPF1-FALSE
chr5122359502AC0.00707PPIC-FALSE(AC)nSINE,Alu
chr1201975173GT0.00053RNPEP+FALSE
chr28823952TG1.04377E-05ID2+FALSE
chr479832870AT0.00655BMP2K+FALSE
chr110519936TC0.00072.FALSEAluJrSINE,Alu
chr119542310TC0.00112LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1230416399GT5.37638E-05GALNT2+FALSE
chr127861184GT0.00425AHDC1-FALSE(TCTTTT)nSINE,Alu
chr1148023067CT0.00772NBPF8-FALSE
chr197116159GT0.00368INSR-FALSE
chr5151041876GT5.29152E-05SPARC-FALSE
chr178342729AG0.00175MIGA1+TRUEFRAMSINE,Alu
chr1165877575AC0.00839UCK2+FALSE
chr3129033736TC0.00309H1FX-FALSE
chr1145322843CT0.00428NBPF20,NBPF10+FALSE
chr5134062606TG0.00193SEC24A+FALSE
chr1475202698AG6.15110E-05FCF1+TRUEAluScSINE,Alu
chr1592715131AT0.00306SLCO3A1+FALSE
chr721941589TA0.00535CDCA7L-FALSE
chr123409538GA0.00464KDM1A+FALSE
chr116889575TC0.00467NBPF1-TRUE
chr138463218GA1.86271E-07FHL3-FALSE
chr43076659AC0.00401HTT+FALSE(CAG)nSINE,Alu
chr312628920GC3.08728E-06RAF1-FALSE
chr2208619675AG0.00012CCNYL1+TRUEAluJbSINE,Alu
chr777409288AG7.47972E-05.FALSEAluScSINE,Alu
chr145244414TA0.00750.FALSE

Differential Expression Gene Analysis