RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	68402796	C	T	0.00656	PNO1	+	FALSE
chr6	160526910	A	T	0.00672	IGF2R	+	FALSE
chr1	16927039	C	T	0.00040	NBPF1	-	FALSE
chr1	10519936	T	C	0.00349		.	FALSE	AluJr	SINE,Alu
chr1	32508478	C	T	0.00509	KHDRBS1	+	FALSE
chr1	109535088	G	A	0.00353	WDR47	-	FALSE
chr1	26144433	T	C	0.00476	SEPN1	+	FALSE
chr3	172115474	A	G	0.00012	FNDC3B	+	FALSE	(A)n	SINE,Alu
chr6	29911284	T	C	0.00019		.	FALSE
chr4	2940165	T	C	0.00201	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	10517623	T	C	0.00664		.	FALSE	AluSx1	SINE,Alu
chr1	33149256	A	G	0.00286	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	10518734	T	C	0.00143		.	FALSE	AluSx1	SINE,Alu
chr20	25428669	A	G	0.00023	GINS1	+	TRUE	AluJb	SINE,Alu
chr1	148561090	G	A	0.00087	NBPF15	+	FALSE
chr12	125512173	A	G	0.00285		.	FALSE	AluSx1	SINE,Alu
chr1	100676277	A	G	0.00135	DBT	-	FALSE
chr1	36068231	T	C	9.19439E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	128602462	T	C	0.00298		.	FALSE	AluSq2	SINE,Alu
chr12	56215097	A	T	0.00051	DNAJC14	-	FALSE
chr1	26755136	A	G	0.00279	LIN28A	+	FALSE	AluSx1	SINE,Alu
chr22	38881699	A	T	0.00802	DDX17	-	FALSE	(TA)n	SINE,Alu
chr13	47345467	G	T	0.00495	ESD	-	FALSE
chr6	114178851	T	C	0.00056	MARCKS	+	FALSE	(TGCCGC)n	SINE,Alu
chr1	205684067	T	C	0.00499	NUCKS1	-	FALSE
chr1	144618201	T	C	2.48995E-05	NBPF20,NBPF9	+	FALSE
chr3	20025663	G	T	0.00612	RAB5A,PP2D1	+,-	FALSE
chr5	37290400	T	C	0.00085		.	FALSE	AluSz	SINE,Alu
chr13	31033325	C	A	0.00792	HMGB1	-	FALSE
chr3	73024350	C	A	0.00109	GXYLT2	+	FALSE
chr1	63924020	C	T	0.00139	ITGB3BP	-	FALSE
chr5	138705183	T	A	9.01084E-05	PAIP2,SLC23A1	+,-	FALSE
chr3	120113286	C	T	1.47726E-06	FSTL1	-	FALSE
chr1	9160982	T	C	0.00695		.	FALSE	AluJb	SINE,Alu
chr1	16919961	C	T	0.00133	NBPF1	-	FALSE
chr1	86049392	C	A	0.00322	CYR61	+	FALSE
chr1	10044366	A	G	0.00531	NMNAT1	+	TRUE	AluSx1	SINE,Alu
chr13	107196415	C	T	0.00285	ARGLU1	-	FALSE	(TTG)n	SINE,Alu
chr19	11256689	T	C	9.47404E-06	SPC24	-	TRUE	AluJr4	SINE,Alu
chr2	171849612	T	C	0.00364	TLK1	-	FALSE
chr17	8378694	A	C	0.00735	MYH10	-	FALSE
chr7	6501828	C	A	0.00110	KDELR2	-	FALSE
chr6	42856131	A	G	0.00062	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr5	125961816	A	G	0.00013	PHAX	+	TRUE	FLAM_C	SINE,Alu
chr3	52289298	G	T	0.00059	WDR82	-	FALSE
chr1	36386905	G	T	0.00065	AGO1	+	FALSE
chr2	128603088	T	C	0.00141		.	FALSE	AluSp	SINE,Alu
chr3	19992312	A	G	0.00798	RAB5A	+	FALSE
chr10	47221452	T	C	0.00869		.	FALSE	AluJb	SINE,Alu
chr3	184550501	A	G	0.00508	VPS8	+	FALSE
chr5	49692280	T	C	9.73531E-05	EMB	-	FALSE	L2c	SINE,Alu
chr1	28826128	A	G	0.00483	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	160965287	T	C	0.00766	F11R	-	TRUE	AluSc	SINE,Alu
chr3	9935263	A	G	1.04104E-09	JAGN1	+	FALSE
chr1	193222534	G	T	0.00504	CDC73	+	FALSE	(TGT)n	SINE,Alu
chr1	158066172	C	T	0.00616	KIRREL	+	FALSE
chr5	118174855	T	C	1.06010E-07	DTWD2	-	TRUE	AluY	SINE,Alu
chr6	3154871	A	C	7.50591E-06	TUBB2A	-	FALSE
chr19	51172526	G	C	0.00276	SHANK1	-	FALSE
chr1	95362952	T	C	0.00155	CNN3	-	FALSE
chr14	19686757	A	G	0.00565	DUXAP10	+	FALSE
chr1	154987526	C	T	0.00218	ZBTB7B	+	FALSE
chr1	145273431	A	G	0.00203	NBPF20,NOTCH2NL	+	FALSE
chr1	8021778	T	C	0.00495	PARK7	+	FALSE
chrX	54587297	A	G	0.00759	GNL3L	+	TRUE	AluSq2	SINE,Alu
chr1	6282315	T	C	0.00508	ICMT	-	TRUE	AluSz	SINE,Alu
chr3	5257975	A	T	9.78592E-05	EDEM1	+	FALSE
chr12	123253851	A	G	0.00470	DENR	+	FALSE	(AT)n	SINE,Alu
chr1	24746451	A	G	0.00683	NIPAL3	+	TRUE	AluSc	SINE,Alu
chr1	36068237	T	C	0.00291	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	37949224	C	T	7.78396E-10	ZC3H12A	+	FALSE
chr4	2940265	T	C	0.00413	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr16	10623553	T	C	0.00024	EMP2	-	TRUE	AluSp	SINE,Alu
chr4	57326126	A	G	0.00790	PAICS	+	TRUE	AluJr	SINE,Alu
chr7	38764358	T	C	0.00675	VPS41	-	TRUE	AluSp	SINE,Alu
chr1	65900357	G	T	0.00851	LEPR,LEPROT	+	FALSE
chr2	102484487	G	T	0.00281	MAP4K4	+	FALSE
chr1	35646125	C	T	0.00027	SFPQ	-	FALSE
chr1	6257826	T	C	0.00192	RPL22	-	FALSE
chr3	5258280	A	G	4.07938E-08	EDEM1	+	FALSE
chr1	120163248	G	A	0.00204	ZNF697	-	FALSE
chr1	2303094	T	C	0.00113	MORN1	-	TRUE	AluSp	SINE,Alu
chr1	6283558	A	T	0.00624	ICMT	-	FALSE
chr15	60678712	G	A	0.00801	ANXA2	-	FALSE
chr2	39212565	T	G	0.00662	SOS1	-	FALSE
chr2	37330144	T	G	0.00478		.	FALSE
chr16	15219677	A	G	0.00136	PDXDC1,PKD1P6-NPIPP1	+,-	FALSE
chr1	36067752	T	C	0.00402	PSMB2	-	TRUE	AluSz	SINE,Alu
chr5	133956668	G	A	0.00419	SAR1B	-	FALSE
chr20	25427805	A	G	1.54320E-07	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	155582104	T	A	0.00099	MSTO1	+	FALSE
chr1	33149375	A	G	0.00840	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr8	30536450	T	C	8.74573E-07	GSR	-	TRUE	AluSp	SINE,Alu
chr5	159829024	G	C	0.00400	SLU7	-	FALSE
chr1	89447720	G	A	0.00521	KYAT3,RBMXL1	-	FALSE
chr4	113346996	G	A	0.00191	ALPK1	+	FALSE
chr3	45722253	A	G	0.00670	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr2	9629954	T	C	0.00802	ADAM17	-	FALSE
chr4	39550570	T	C	0.00203	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr1	32372358	C	T	0.00303	PTP4A2	-	FALSE	(CA)n	SINE,Alu
chr7	91630345	G	A	0.00473	AKAP9	+	FALSE
chr1	47746678	G	C	0.00374	STIL	-	FALSE
chr4	177252327	A	G	2.51883E-09	SPCS3	+	TRUE
chr1	10318652	C	G	0.00047	KIF1B	+	FALSE
chr1	16927379	T	A	0.00864	NBPF1	-	FALSE
chr2	11426734	T	C	4.76290E-06	ROCK2	-	FALSE
chr3	183209036	T	C	1.78981E-05	KLHL6	-	TRUE	AluSq	SINE,Alu
chr16	67715404	T	C	0.00102	GFOD2	-	TRUE	AluSz	SINE,Alu
chr1	230979247	G	A	0.00137	C1orf198	-	FALSE
chr5	149823799	A	T	0.00672	RPS14	-	FALSE
chr1	20811795	G	C	0.00047	CAMK2N1	-	FALSE
chr1	150937959	A	G	3.24660E-05	CERS2	-	FALSE	G-rich	SINE,Alu
chr4	2940347	T	C	0.00466	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr21	34729930	A	G	0.00060	IFNAR1	+	TRUE	AluSg7	SINE,Alu
chr1	50906945	C	T	0.00178	FAF1	-	FALSE
chr10	51613231	T	C	2.61914E-05	TIMM23B,TIMM23	+,-	FALSE
chr1	11979807	C	A	0.00574	KIAA2013	-	FALSE
chr1	6354955	G	A	0.00282	ACOT7	-	FALSE
chr2	17942775	T	A	0.00367	GEN1	+	FALSE
chr1	19543353	T	C	0.00081	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr12	120898658	A	G	0.00372	GATC	+	TRUE	AluY	SINE,Alu
chr12	1085978	T	A	0.00421	RAD52	-	FALSE	L2	SINE,Alu
chr1	100654769	T	C	0.00318	DBT	-	TRUE	AluSz	SINE,Alu
chr7	44918736	T	C	4.05417E-05	PURB	-	TRUE	AluSg	SINE,Alu
chr9	128001436	C	T	0.00052	HSPA5	-	FALSE
chr12	9464350	G	C	0.00209	LOC642846	+	FALSE
chr2	91843471	C	T	0.00105	LOC654342	-	FALSE
chr2	204301757	C	T	0.00999	RAPH1	-	FALSE
chr1	6614188	C	T	0.00906	NOL9	-	FALSE
chr1	10042955	A	G	0.00430	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	148343689	A	G	0.00517	NBPF8,NBPF14,NBPF9	-	FALSE
chr3	42591046	C	A	0.00933	SEC22C	-	FALSE
chr1	145513031	A	G	0.00014	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	35817023	G	C	0.00547	ZMYM4	+	FALSE
chr1	203277245	G	A	0.00115	BTG2	+	FALSE
chr3	48787052	T	C	0.00631	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr22	36677546	T	G	0.00197	MYH9	-	FALSE
chr1	1534676	C	T	4.01953E-10	FNDC10	-	FALSE
chr2	29170763	G	A	5.21672E-05	WDR43	+	FALSE
chr6	31236900	G	A	0.00167		.	FALSE
chr1	206566195	C	T	7.54522E-05	SRGAP2	+	FALSE
chr1	889183	C	T	3.20836E-06	NOC2L	-	FALSE
chr3	156258283	T	C	0.00071	SSR3	-	TRUE	AluYk3	SINE,Alu
chr5	40826638	C	A	0.00749	LOC100506548	-	FALSE	LTR78	SINE,Alu
chr1	55207988	G	A	0.00914	MROH7-TTC4,TTC4	+	FALSE
chr4	68483513	G	A	3.54156E-05	UBA6	-	FALSE
chr5	37290335	T	C	1.49367E-06		.	FALSE	AluSz	SINE,Alu
chr6	149912307	A	G	0.00026		.	FALSE	AluSc	SINE,Alu
chr2	37329238	T	C	0.00754		.	FALSE	AluJr4	SINE,Alu
chr3	112319504	T	C	0.00040	LINC01279	-	TRUE	AluJb	SINE,Alu
chr1	41088377	C	T	2.57179E-08	RIMS3	-	FALSE
chr1	16929327	C	T	5.08143E-05	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr3	148748199	C	A	3.38210E-05	HLTF	-	FALSE
chr21	34730108	A	G	0.00680	IFNAR1	+	TRUE	AluSg7	SINE,Alu
chr1	145513112	A	G	0.00080	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr17	263417	C	T	0.00675	LOC105371430,C17orf97	+,-	FALSE
chr1	23835919	C	T	0.00872	E2F2	-	FALSE
chr10	5499824	A	G	0.00070	NET1	+	FALSE
chr8	40011786	C	A	0.00196	C8orf4	+	FALSE
chr1	67874849	T	C	7.36358E-05	SERBP1	-	TRUE	AluSx	SINE,Alu
chr2	102793246	A	G	0.00904	IL1R1	+	FALSE
chr1	197476807	G	C	0.00287	DENND1B	-	FALSE
chr3	10193796	A	G	0.00291	VHL	+	TRUE	AluSx	SINE,Alu
chr1	43629979	G	T	0.00470	EBNA1BP2	-	FALSE
chr19	19793168	A	G	0.00481	ZNF101	+	TRUE	AluSz	SINE,Alu
chr1	115259543	C	T	0.00492	CSDE1	-	FALSE
chr3	49395694	T	C	0.00074	GPX1	-	FALSE
chr9	115447532	T	C	9.24886E-06	INIP	-	TRUE	AluJb	SINE,Alu
chr1	900719	T	A	0.00436	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr1	16929100	C	T	0.00249	NBPF1	-	FALSE	LTR16B2	SINE,Alu
chr1	179042590	A	G	0.00152	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	28825418	A	G	0.00725	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	28662057	A	G	3.94650E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	24022914	A	G	0.00347	RPL11	+	FALSE
chr4	103715820	A	C	0.00652	LOC102723704,UBE2D3	+,-	FALSE	(A)n	SINE,Alu
chr12	133298349	A	G	0.00000	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	207943211	G	A	0.00248	CD46	+	FALSE	AluSx1	SINE,Alu
chr1	11810674	G	A	0.00279	AGTRAP	+	FALSE
chr1	1345006	A	G	0.00123		.	FALSE	AluSg	SINE,Alu
chr3	10193511	A	G	0.00116	VHL	+	TRUE	AluJr	SINE,Alu
chr1	10520153	T	C	0.00398		.	FALSE	AluSx	SINE,Alu
chr1	900505	G	C	0.00388	KLHL17	+	FALSE
chr1	19542250	T	C	3.30618E-05	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	38280618	G	T	0.00020	MTF1	-	FALSE	(T)n	SINE,Alu
chr2	143638991	A	C	0.00054	KYNU	+	FALSE
chr1	32697109	A	G	0.00015	EIF3I	+	FALSE	AluSp	SINE,Alu
chr3	48485493	A	G	7.09932E-12	TMA7	+	FALSE
chr1	19586501	A	G	0.00119	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	67874697	T	C	0.00010	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr6	42854664	A	G	5.02680E-07	RPL7L1	+	TRUE	AluSc	SINE,Alu
chr1	145311900	C	T	0.00011	NBPF20,NBPF10	+	FALSE
chr1	19585903	G	A	0.00575	MRTO4	+	FALSE	AluJr	SINE,Alu
chr1	220870440	G	A	0.00193	C1orf115	+	FALSE
chr4	39551166	T	C	0.00309	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr19	58375195	A	G	0.00080	ZNF587	+	TRUE	AluSx4	SINE,Alu
chr1	16932809	C	T	0.00074	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	1572530	A	C	0.00425	CDK11B	-	FALSE
chr1	36068281	T	C	0.00201	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	9328242	A	G	5.63395E-05	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	33148691	A	G	0.00547	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr6	134492482	A	C	0.00108	SGK1	-	FALSE
chr1	1634860	G	T	0.00659	CDK11B,CDK11A	-	FALSE
chr16	10625414	T	C	0.00015	EMP2	-	TRUE	AluSx	SINE,Alu
chr1	46075777	A	G	0.00268	NASP	+	TRUE	AluSx4	SINE,Alu
chr2	64119875	G	A	0.00781	VPS54	-	FALSE
chr1	16918717	C	T	0.00550	NBPF1	-	FALSE
chr19	18475303	A	G	0.00757	PGPEP1	+	TRUE	AluSx1	SINE,Alu
chr11	62299945	A	C	0.00314	AHNAK	-	FALSE
chr7	105162562	G	C	0.00096	PUS7	-	FALSE
chr1	45976269	C	G	0.00039	MMACHC	+	FALSE
chr2	191184475	A	G	0.00895	HIBCH	-	FALSE
chr1	10520684	T	C	0.00125	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	9161366	T	C	0.00189		.	FALSE	AluSx	SINE,Alu
chr1	100550370	T	A	0.00731	SASS6	-	FALSE
chr2	85548074	T	C	0.00428	TGOLN2	-	FALSE
chr2	32532809	A	G	0.00255		.	FALSE	AluSx1	SINE,Alu
chr1	29519712	T	C	0.00017	MECR	-	TRUE	AluJb	SINE,Alu
chr2	20648946	C	T	0.00531	RHOB	+	FALSE
chr3	24019977	A	C	0.00281	NR1D2	+	FALSE
chr16	88767769	G	C	0.00420	RNF166	-	FALSE
chr1	222906426	T	C	0.00322	BROX	+	FALSE	AluSx	SINE,Alu
chr1	16889423	G	C	0.00459	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr18	7012123	A	G	0.00065	LAMA1	-	FALSE
chr1	16889563	C	A	0.00090	NBPF1	-	FALSE
chr1	101444791	C	T	0.00268	SLC30A7	+	FALSE
chr11	8707395	C	A	9.51875E-07	RPL27A	+	FALSE
chr4	165998958	T	C	0.00021	TMEM192	-	TRUE	Alu	SINE,Alu
chr1	185069687	C	T	0.00072	RNF2	+	FALSE
chr1	9160989	T	C	0.00609		.	FALSE	AluJb	SINE,Alu
chr1	28661665	A	G	0.00808	MED18	+	TRUE	AluSg	SINE,Alu
chr6	53363497	A	G	0.00106	GCLC	-	FALSE
chr1	10517653	T	C	0.00038		.	FALSE	AluSx1	SINE,Alu
chr1	16892279	C	A	0.00326	NBPF1	-	FALSE
chr1	113672640	A	G	0.00629		.	FALSE	AluJb	SINE,Alu
chr16	10624993	T	C	1.49189E-05	EMP2	-	TRUE	AluSx3	SINE,Alu
chr3	101405563	A	G	0.00511	RPL24	-	FALSE
chr1	28825760	A	G	0.00802	PHACTR4	+	TRUE	AluSp	SINE,Alu
chr15	39880822	A	G	0.00281	THBS1	+	FALSE
chr3	45721934	A	G	0.00639	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	45244053	A	G	0.00202	RPS8	+	FALSE
chr8	30535980	T	C	0.00038	GSR	-	TRUE	AluJr	SINE,Alu
chr1	16932783	G	C	0.00843	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr12	69237057	A	G	0.00259	MDM2	+	TRUE
chr6	13788045	T	C	0.00157	MCUR1	-	TRUE
chr3	123368013	A	G	0.00812	MYLK	-	FALSE
chr2	85547772	G	C	0.00871	TGOLN2	-	FALSE
chr11	32625925	A	G	0.00845	CCDC73	-	FALSE	AluJb	SINE,Alu
chr2	37478348	T	A	0.00392	PRKD3	-	FALSE
chr1	212254067	G	A	0.00714	DTL	+	FALSE
chr1	29644328	C	T	0.00076	PTPRU	+	FALSE
chr15	33063527	C	T	0.00183	FMN1	-	FALSE	AluYk3	SINE,Alu
chr1	24798068	C	A	0.00686	NIPAL3	+	FALSE	AluJr	SINE,Alu
chr11	62557871	G	C	0.00273	TMEM179B,TMEM223	+,-	FALSE
chr3	120114128	A	C	6.21214E-12	FSTL1	-	FALSE
chr1	36068275	T	C	0.00048	PSMB2	-	TRUE	AluSc	SINE,Alu
chr4	129795661	A	T	0.00165	JADE1	+	FALSE
chr14	74179051	T	C	0.00982	PNMA1	-	FALSE	Charlie15b	SINE,Alu
chr12	125269475	T	C	0.00184	SCARB1	-	FALSE
chr16	10625058	T	C	2.66942E-12	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	3545184	G	T	0.00347	TPRG1L	+	FALSE
chr7	22984967	A	G	0.00108	FAM126A	-	FALSE
chr1	109818158	C	T	0.00212	CELSR2	+	FALSE
chr1	145324364	C	G	0.00343	NBPF20,NBPF10	+	FALSE
chr1	38001614	T	C	0.00222	SNIP1	-	TRUE	AluSx	SINE,Alu
chr1	168218522	A	G	0.00073		.	FALSE	AluSz	SINE,Alu
chr1	160112392	G	A	0.00701	ATP1A2	+	FALSE	AluSx3	SINE,Alu
chr1	22854931	C	A	0.00238	ZBTB40	+	FALSE	A-rich	SINE,Alu
chr1	11084345	C	T	0.00558	TARDBP	+	FALSE

RBP	ZRSR2
Knock-Method	shRNA
RBP Family	zf-CCCH
Biosample Name	TF-1 cells
Tissue Type	Blood
Biosample Type	Cell line
# of Control	1
# of Treat	2
Species	Human
Data Source	GEO
Profile ID	GSE63816
Platform	GPL11154
Pubmed ID	25586593

ZRSR2 - Target Gene Network