EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr16787843Intronnovel0.29
BLCAchr16786923Missense_MutationNAE139K0.2
BRCAchr16787377Missense_Mutationrs763994085V95M0.1
BRCAchr16787410Missense_Mutationrs752096465G84S0.21
CESCchr16786840SilentnovelL166L0.42
COADchr16787127Missense_MutationNAR120K0.21
COADchr16787382Missense_MutationNAR93L0.23
COADchr16787636Nonsense_MutationnovelW34*0.38PseudoU_synth_2
COADchr16787383Missense_MutationNAR93W0.37
COADchr16787433Missense_MutationnovelV76A0.2
COADchr16786365Missense_MutationnovelQ175P0.29
ESCAchr16786115Silentrs144842334P258P0.31
HNSCchr16786088Frame_Shift_DelnovelR268Gfs*620.36
HNSCchr16786894Silentrs376392312L148L0.25
LGGchr16786114Missense_Mutationrs767273286D259N0.56
LUSCchr16787656Missense_Mutationrs775498059R28G0.14PseudoU_synth_2
LUSCchr16786833Missense_MutationnovelL169F0.28
PAADchr16786178SilentnovelC237C0.04
PRADchr16786244SilentnovelI215I0.15
PRADchr16786359Missense_MutationNAR177L0.11
PRADchr16786249Missense_MutationnovelR214C0.06
PRADchr16786869Missense_Mutationrs752397101A157T0.33
READchr16785969Missense_Mutationrs200620102T307M0.24
SKCMchr16786346Missense_MutationNAS181R0.56
SKCMchr16786243Missense_MutationNAP216S0.38
SKCMchr16786139Silentrs187510850L250L0.55
SKCMchr16786074Missense_MutationNAP272L0.23
STADchr16786929Splice_SiteNAX137_splice0.15
STADchr16786152Missense_Mutationrs147626249S246L0.23
STADchr16787790Intronnovel0.2
THCAchr16787367Missense_MutationNAA98V0.32
UCECchr16787093SilentnovelC131C0.38
UCECchr16786267SilentNAL208L0.54
UCECchr16786202SilentNAP229P0.29
UCECchr16787452Missense_Mutationrs370324017T70A0.25
UCECchr16787176Missense_Mutationrs144681546R104W0.09
UCECchr16786893Missense_Mutationrs754419281V149M0.35
UCECchr16786870Silentrs762754089Y156Y0.27
UCECchr16787435Silentrs768427216C75C0.5
UCECchr16787405Silentrs778345503S85S0.48
UCECchr16787111SilentnovelG125G0.38

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCAMP0.54440.22898
CHOLDEL0.11110.23475
ESCADEL0.27720.012791
LUADDEL0.12980.1886
UCSDEL0.53570.13407

Survival Analysis
CancerP-value Q-value
KIRC0.00011

Kaplan-Meier Survival Analysis

STAD0.0072

Kaplan-Meier Survival Analysis

HNSC0.017

Kaplan-Meier Survival Analysis

SKCM0.00075

Kaplan-Meier Survival Analysis

CESC0.0092

Kaplan-Meier Survival Analysis

LAML0.011

Kaplan-Meier Survival Analysis

LIHC0.00084

Kaplan-Meier Survival Analysis

DLBC0.0093

Kaplan-Meier Survival Analysis

CHOL0.034

Kaplan-Meier Survival Analysis

UVM0.028

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000007376 (Gene tree)
Gene ID
113000
Gene Symbol
RPUSD1
Alias
RLUCL|MGC19600|C16orf40
Full Name
RNA pseudouridine synthase domain containing 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
3,424 bases
Position
chr16:784,974-788,397
Accession
14173
RBP type
canonical RBP
Summary
(RNA Pseudouridine Synthase Domain Containing 1) is a Protein Coding gene. Diseases associated with RPUSD1 include Basal Cell Nevus Syndrome. Gene Ontology (GO) annotations related to this gene include RNA binding and pseudouridine synthase activity. An important paralog of this gene is RPUSD4.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000007264PseudoU_synth_2PF00849.227.1e-2411
ENSP00000455026PseudoU_synth_2PF00849.227.1e-2411
ENSP00000456231PseudoU_synth_2PF00849.229e-1411
ENSP00000457722PseudoU_synth_2PF00849.224e-1211
ENSP00000458059PseudoU_synth_2PF00849.226.6e-1211
ENSP00000456692PseudoU_synth_2PF00849.227.4e-0711
ENSP00000454616PseudoU_synth_2PF00849.227.5e-0711
ENSP00000455862PseudoU_synth_2PF00849.228.2e-0711
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000563560RPUSD1-204587-ENSP00000456231168 (aa)-H3BRG3
ENST00000567114RPUSD1-2081835-ENSP00000455862183 (aa)-H3BQN8
ENST00000565377RPUSD1-205940-ENSP00000456692173 (aa)-H3BSG4
ENST00000562070RPUSD1-203954-ENSP00000458059178 (aa)-H3BVD0
ENST00000569601RPUSD1-210917-ENSP00000454616181 (aa)-H3BMZ6
ENST00000007264RPUSD1-2012050-ENSP00000007264312 (aa)-Q9UJJ7
ENST00000565503RPUSD1-206561-ENSP0000045654597 (aa)-H3BS55
ENST00000565809RPUSD1-2071918XM_024450144ENSP00000457722131 (aa)XP_024305912H3BUN6
ENST00000567283RPUSD1-209835-ENSP00000457527141 (aa)-H3BU91
ENST00000561734RPUSD1-2022159-ENSP00000455026312 (aa)-Q9UJJ7
Gene Model
Click here to download ENSG00000007376's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000007376's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000007376RPUSD19966.467ENSAPOG00000022221rpusd19855.195Acanthochromis_polyacanthus
ENSG00000007376RPUSD110085.714ENSAMEG00000007461RPUSD110080.449Ailuropoda_melanoleuca
ENSG00000007376RPUSD19967.665ENSACIG00000015863rpusd19857.143Amphilophus_citrinellus
ENSG00000007376RPUSD19967.066ENSAOCG00000021975rpusd19555.769Amphiprion_ocellaris
ENSG00000007376RPUSD19966.467ENSAPEG00000001316rpusd19555.449Amphiprion_percula
ENSG00000007376RPUSD19967.066ENSATEG00000002984rpusd19856.958Anabas_testudineus
ENSG00000007376RPUSD110052.000ENSAPLG00000012316RPUSD19958.300Anas_platyrhynchos
ENSG00000007376RPUSD110076.786ENSACAG00000008953RPUSD110064.013Anolis_carolinensis
ENSG00000007376RPUSD110094.048ENSANAG00000024709RPUSD110093.910Aotus_nancymaae
ENSG00000007376RPUSD19967.665ENSACLG00000013692rpusd19857.605Astatotilapia_calliptera
ENSG00000007376RPUSD110066.071ENSAMXG00000019802rpusd110056.688Astyanax_mexicanus
ENSG00000007376RPUSD110089.881ENSBTAG00000000179RPUSD110084.936Bos_taurus
ENSG00000007376RPUSD110093.452ENSCJAG00000012253RPUSD110093.269Callithrix_jacchus
ENSG00000007376RPUSD110086.905ENSCAFG00000019614RPUSD19981.994Canis_familiaris
ENSG00000007376RPUSD110086.905ENSCAFG00020008891RPUSD19981.994Canis_lupus_dingo
ENSG00000007376RPUSD110089.286ENSCHIG00000012872RPUSD110083.654Capra_hircus
ENSG00000007376RPUSD110091.667ENSTSYG00000036934RPUSD110090.076Carlito_syrichta
ENSG00000007376RPUSD110086.310ENSCAPG00000014219RPUSD110081.410Cavia_aperea
ENSG00000007376RPUSD110086.310ENSCPOG00000034604RPUSD110081.410Cavia_porcellus
ENSG00000007376RPUSD110094.231ENSCCAG00000034385RPUSD110094.231Cebus_capucinus
ENSG00000007376RPUSD110097.710ENSCATG00000042983RPUSD110097.710Cercocebus_atys
ENSG00000007376RPUSD110087.500ENSCLAG00000013966RPUSD110081.731Chinchilla_lanigera
ENSG00000007376RPUSD110096.474ENSCSAG00000012121RPUSD110096.474Chlorocebus_sabaeus
ENSG00000007376RPUSD19285.393ENSCPBG00000021101RPUSD19966.019Chrysemys_picta_bellii
ENSG00000007376RPUSD110096.947ENSCANG00000028576RPUSD110096.947Colobus_angolensis_palliatus
ENSG00000007376RPUSD110086.310ENSCGRG00001014253Rpusd110079.167Cricetulus_griseus_chok1gshd
ENSG00000007376RPUSD110086.310ENSCGRG00000017995Rpusd110079.167Cricetulus_griseus_crigri
ENSG00000007376RPUSD19269.663ENSCSEG00000007648-10072.816Cynoglossus_semilaevis
ENSG00000007376RPUSD110066.071ENSCSEG00000018512rpusd110055.016Cynoglossus_semilaevis
ENSG00000007376RPUSD19965.868ENSCVAG00000022746rpusd19855.195Cyprinodon_variegatus
ENSG00000007376RPUSD110067.857ENSDARG00000060192rpusd110058.466Danio_rerio
ENSG00000007376RPUSD110091.667ENSDNOG00000003721RPUSD110083.654Dasypus_novemcinctus
ENSG00000007376RPUSD110089.881ENSDORG00000026656Rpusd110083.654Dipodomys_ordii
ENSG00000007376RPUSD19948.901ENSEBUG00000008767rpusd19446.154Eptatretus_burgeri
ENSG00000007376RPUSD110091.071ENSEASG00005018421RPUSD17586.032Equus_asinus_asinus
ENSG00000007376RPUSD110064.286ENSELUG00000014307rpusd18851.084Esox_lucius
ENSG00000007376RPUSD110085.714ENSFCAG00000010359RPUSD19983.206Felis_catus
ENSG00000007376RPUSD110076.190ENSFALG00000003211RPUSD110063.666Ficedula_albicollis
ENSG00000007376RPUSD110088.690ENSFDAG00000013398RPUSD110082.692Fukomys_damarensis
ENSG00000007376RPUSD19967.066ENSFHEG00000004736rpusd19855.410Fundulus_heteroclitus
ENSG00000007376RPUSD19967.066ENSGMOG00000010756rpusd19856.066Gadus_morhua
ENSG00000007376RPUSD19282.022ENSGALG00000005315RPUSD110063.107Gallus_gallus
ENSG00000007376RPUSD19967.066ENSGAFG00000009886rpusd19856.066Gambusia_affinis
ENSG00000007376RPUSD19865.455ENSGACG00000014276rpusd19755.776Gasterosteus_aculeatus
ENSG00000007376RPUSD19285.393ENSGAGG00000004181RPUSD19965.372Gopherus_agassizii
ENSG00000007376RPUSD110099.422ENSGGOG00000013997RPUSD110099.038Gorilla_gorilla
ENSG00000007376RPUSD19967.066ENSHBUG00000023728rpusd19857.282Haplochromis_burtoni
ENSG00000007376RPUSD110088.095ENSHGLG00000002595RPUSD110081.731Heterocephalus_glaber_female
ENSG00000007376RPUSD110088.095ENSHGLG00100014303RPUSD110081.731Heterocephalus_glaber_male
ENSG00000007376RPUSD19273.034ENSHCOG00000020005-9776.699Hippocampus_comes
ENSG00000007376RPUSD110066.071ENSHCOG00000002390rpusd19957.516Hippocampus_comes
ENSG00000007376RPUSD110070.833ENSIPUG00000001570rpusd19959.416Ictalurus_punctatus
ENSG00000007376RPUSD110089.286ENSSTOG00000004276RPUSD110085.256Ictidomys_tridecemlineatus
ENSG00000007376RPUSD110089.881ENSJJAG00000015696Rpusd110083.013Jaculus_jaculus
ENSG00000007376RPUSD19966.467ENSKMAG00000017287rpusd19856.066Kryptolebias_marmoratus
ENSG00000007376RPUSD19967.665ENSLBEG00000022502rpusd19856.393Labrus_bergylta
ENSG00000007376RPUSD19967.665ENSLBEG00000013354RPUSD19856.393Labrus_bergylta
ENSG00000007376RPUSD110072.024ENSLACG00000008869RPUSD19961.039Latimeria_chalumnae
ENSG00000007376RPUSD110070.238ENSLOCG00000005682rpusd19971.429Lepisosteus_oculatus
ENSG00000007376RPUSD110088.690ENSLAFG00000002115RPUSD110080.128Loxodonta_africana
ENSG00000007376RPUSD110097.710ENSMFAG00000003961RPUSD110097.710Macaca_fascicularis
ENSG00000007376RPUSD110097.710ENSMMUG00000000842RPUSD110097.710Macaca_mulatta
ENSG00000007376RPUSD110097.710ENSMNEG00000042712RPUSD110097.710Macaca_nemestrina
ENSG00000007376RPUSD110097.710ENSMLEG00000030591RPUSD110097.710Mandrillus_leucophaeus
ENSG00000007376RPUSD19965.868ENSMAMG00000004735rpusd19856.536Mastacembelus_armatus
ENSG00000007376RPUSD19967.665ENSMZEG00005003214rpusd19857.605Maylandia_zebra
ENSG00000007376RPUSD19673.913ENSMGAG00000005447RPUSD19962.252Meleagris_gallopavo
ENSG00000007376RPUSD19291.011ENSMAUG00000019998Rpusd110075.564Mesocricetus_auratus
ENSG00000007376RPUSD110091.667ENSMICG00000017561RPUSD110090.840Microcebus_murinus
ENSG00000007376RPUSD110088.095ENSMOCG00000014082Rpusd19981.350Microtus_ochrogaster
ENSG00000007376RPUSD19271.910ENSMMOG00000012569rpusd19955.229Mola_mola
ENSG00000007376RPUSD110077.976ENSMODG00000016882RPUSD110065.506Monodelphis_domestica
ENSG00000007376RPUSD19967.066ENSMALG00000017818rpusd19857.468Monopterus_albus
ENSG00000007376RPUSD110086.905MGP_CAROLIEiJ_G0021244Rpusd110081.090Mus_caroli
ENSG00000007376RPUSD110087.500ENSMUSG00000041199Rpusd110081.410Mus_musculus
ENSG00000007376RPUSD110087.500MGP_PahariEiJ_G0023562Rpusd19980.386Mus_pahari
ENSG00000007376RPUSD110087.500MGP_SPRETEiJ_G0022155Rpusd110081.410Mus_spretus
ENSG00000007376RPUSD110083.929ENSMPUG00000015897RPUSD110079.808Mustela_putorius_furo
ENSG00000007376RPUSD110091.667ENSMLUG00000001089RPUSD110085.577Myotis_lucifugus
ENSG00000007376RPUSD110088.095ENSNGAG00000003595Rpusd110082.372Nannospalax_galili
ENSG00000007376RPUSD19967.066ENSNBRG00000006457rpusd19856.818Neolamprologus_brichardi
ENSG00000007376RPUSD19696.000ENSNLEG00000008424-10096.000Nomascus_leucogenys
ENSG00000007376RPUSD110077.381ENSMEUG00000016049RPUSD110067.308Notamacropus_eugenii
ENSG00000007376RPUSD110084.524ENSOPRG00000008340RPUSD19975.484Ochotona_princeps
ENSG00000007376RPUSD110088.095ENSODEG00000016945RPUSD110080.769Octodon_degus
ENSG00000007376RPUSD19967.066ENSONIG00000015672rpusd19956.958Oreochromis_niloticus
ENSG00000007376RPUSD19271.910ENSOANG00000030625-7875.000Ornithorhynchus_anatinus
ENSG00000007376RPUSD19970.060ENSORLG00000013009rpusd19957.792Oryzias_latipes
ENSG00000007376RPUSD19969.461ENSORLG00020010382rpusd19957.468Oryzias_latipes_hni
ENSG00000007376RPUSD19968.862ENSORLG00015021354rpusd19957.143Oryzias_latipes_hsok
ENSG00000007376RPUSD19968.263ENSOMEG00000021426rpusd19856.721Oryzias_melastigma
ENSG00000007376RPUSD110092.262ENSOGAG00000003795RPUSD110089.744Otolemur_garnettii
ENSG00000007376RPUSD110089.286ENSOARG00000014254RPUSD110084.615Ovis_aries
ENSG00000007376RPUSD110099.038ENSPPAG00000034797RPUSD110099.038Pan_paniscus
ENSG00000007376RPUSD110085.714ENSPPRG00000012389RPUSD19982.443Panthera_pardus
ENSG00000007376RPUSD110085.714ENSPTIG00000008545RPUSD19982.443Panthera_tigris_altaica
ENSG00000007376RPUSD110099.038ENSPTRG00000007565RPUSD110099.038Pan_troglodytes
ENSG00000007376RPUSD110096.947ENSPANG00000024401RPUSD110096.947Papio_anubis
ENSG00000007376RPUSD110069.048ENSPKIG00000018890rpusd19158.544Paramormyrops_kingsleyae
ENSG00000007376RPUSD110076.786ENSPSIG00000013945RPUSD110065.049Pelodiscus_sinensis
ENSG00000007376RPUSD19965.269ENSPMGG00000014950rpusd19856.721Periophthalmus_magnuspinnatus
ENSG00000007376RPUSD110086.905ENSPEMG00000000497Rpusd110081.090Peromyscus_maniculatus_bairdii
ENSG00000007376RPUSD110056.805ENSPMAG00000001563rpusd18156.175Petromyzon_marinus
ENSG00000007376RPUSD110079.167ENSPCIG00000021216-9466.346Phascolarctos_cinereus
ENSG00000007376RPUSD19967.066ENSPFOG00000007946rpusd19857.377Poecilia_formosa
ENSG00000007376RPUSD19967.066ENSPLAG00000011925rpusd19857.377Poecilia_latipinna
ENSG00000007376RPUSD19965.868ENSPMEG00000002910rpusd19856.721Poecilia_mexicana
ENSG00000007376RPUSD19967.066ENSPREG00000019851rpusd19856.536Poecilia_reticulata
ENSG00000007376RPUSD110073.224ENSPCAG00000002258RPUSD110067.628Procavia_capensis
ENSG00000007376RPUSD110091.667ENSPCOG00000022582RPUSD110090.076Propithecus_coquereli
ENSG00000007376RPUSD19888.415ENSPVAG00000013104RPUSD110083.974Pteropus_vampyrus
ENSG00000007376RPUSD19967.066ENSPNYG00000024076rpusd19857.282Pundamilia_nyererei
ENSG00000007376RPUSD110066.667ENSPNAG00000013806rpusd18761.628Pygocentrus_nattereri
ENSG00000007376RPUSD110086.905ENSRNOG00000023639Rpusd110081.731Rattus_norvegicus
ENSG00000007376RPUSD110097.710ENSRBIG00000030238RPUSD110097.710Rhinopithecus_bieti
ENSG00000007376RPUSD110097.710ENSRROG00000036663RPUSD110097.710Rhinopithecus_roxellana
ENSG00000007376RPUSD110094.643ENSSBOG00000033063RPUSD110090.064Saimiri_boliviensis_boliviensis
ENSG00000007376RPUSD110077.381ENSSHAG00000013500RPUSD110066.667Sarcophilus_harrisii
ENSG00000007376RPUSD110069.643ENSSFOG00015014394rpusd19960.323Scleropages_formosus
ENSG00000007376RPUSD19966.467ENSSMAG00000008045rpusd19155.738Scophthalmus_maximus
ENSG00000007376RPUSD19968.862ENSSDUG00000001829rpusd19558.361Seriola_dumerili
ENSG00000007376RPUSD19968.862ENSSLDG00000020853rpusd19558.361Seriola_lalandi_dorsalis
ENSG00000007376RPUSD17187.395ENSSARG00000011187-10089.222Sorex_araneus
ENSG00000007376RPUSD110052.299ENSSPUG00000005119-10052.525Sphenodon_punctatus
ENSG00000007376RPUSD19967.066ENSSPAG00000012708rpusd19856.393Stegastes_partitus
ENSG00000007376RPUSD110091.071ENSSSCG00000008000RPUSD19889.370Sus_scrofa
ENSG00000007376RPUSD110076.190ENSTGUG00000015375RPUSD110071.484Taeniopygia_guttata
ENSG00000007376RPUSD19966.467ENSTRUG00000003041rpusd19855.844Takifugu_rubripes
ENSG00000007376RPUSD19171.591ENSTNIG00000002660rpusd19952.614Tetraodon_nigroviridis
ENSG00000007376RPUSD110089.881ENSTTRG00000010167RPUSD19986.495Tursiops_truncatus
ENSG00000007376RPUSD110085.119ENSUAMG00000012736RPUSD110080.128Ursus_americanus
ENSG00000007376RPUSD110085.119ENSUMAG00000021174RPUSD110080.128Ursus_maritimus
ENSG00000007376RPUSD110085.714ENSVVUG00000012357RPUSD19980.064Vulpes_vulpes
ENSG00000007376RPUSD19278.652ENSXETG00000007184rpusd110060.256Xenopus_tropicalis
ENSG00000007376RPUSD19966.467ENSXCOG00000017930rpusd19854.754Xiphophorus_couchianus
ENSG00000007376RPUSD19967.665ENSXMAG00000024084rpusd19855.738Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001522pseudouridine synthesis-IEAProcess
GO:0003674molecular_function-NDFunction
GO:0003723RNA binding-IEAFunction
GO:0005575cellular_component-NDComponent
GO:0008150biological_process-NDProcess
GO:0009982pseudouridine synthase activity-IEAFunction
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