EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
12068296Truncating mutations of RB1CC1 in human breast cancer.Nat Genet2002 JulChano T-
21602932Downregulation of FIP200 induces apoptosis of glioblastoma cells and microvascular endothelial cells by enhancing Pyk2 activity.PLoS One2011Wang Ddoi: 10.1371/journal.pone.0019629
12163359Preferential expression of RB1-inducible coiled-coil 1 in terminal differentiated musculoskeletal cells.Am J Pathol2002 AugChano T-
22751121FIP200 inhibits β-catenin-mediated transcription by promoting APC-independent β-catenin ubiquitination.Oncogene2013 May 9Choi JDdoi: 10.1038/onc.2012.262
24732589Tumor-suppressive functions of 15-Lipoxygenase-2 and RB1CC1 in prostate cancer.Cell Cycle2014Suraneni MVdoi: 10.4161/cc.28757
19437535RB1CC1 activates the promoter and expression of RB1 in human cancer.Int J Cancer2009 Aug 15Ikebuchi Kdoi: 10.1002/ijc.24466.
21203526RB1CC1 together with RB1 and p53 predicts long-term survival in Japanese breast cancer patients.PLoS One2010 Dec 22Chano Tdoi: 10.1371/journal.pone.0015737.
26829385MiR-20a and miR-20b negatively regulate autophagy by targeting RB1CC1/FIP200 in breast cancer cells.Life Sci2016 Feb 15Li Sdoi: 10.1016/j.lfs.2016.01.044
16061648Mechanism of cell cycle regulation by FIP200 in human breast cancer cells.Cancer Res2005 Aug 1Melkoumian ZK-
24610824Identification of miR-133b and RB1CC1 as independent predictors for biochemical recurrence and potential therapeutic targets for prostate cancer.Clin Cancer Res2014 May 1Li Xdoi: 10.1158/1078-0432.CCR-13-1588
18036779FIP200, a key signaling node to coordinately regulate various cellular processes.Cell Signal2008 MayGan B-
27615604miR-224-3p inhibits autophagy in cervical cancer cells by targeting FIP200.Sci Rep2016 Sep 12Fang Wdoi: 10.1038/srep33229.

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr852657074Nonsense_MutationnovelE919*0.16
BLCAchr852661152SilentNAY496Y0.2
BLCAchr852657361Missense_MutationnovelR823T0.06
BLCAchr852661596Missense_Mutationrs750998543I433V0.06
BLCAchr852656691SilentnovelL1046L0.28
BLCAchr852657693SilentnovelQ712Q0.07
BLCAchr852656273Nonsense_MutationnovelE1186*0.42
BLCAchr852674206Missense_MutationNAR214T0.06
BLCAchr852656091SilentNAL1246L0.4
BLCAchr852685439Missense_MutationnovelG11R0.04
BLCAchr852628131Missense_MutationnovelE1513K0.27
BLCAchr852656186Missense_MutationnovelD1215H0.32
BLCAchr852642362Missense_MutationnovelM1442I0.24
BLCAchr852645853Missense_MutationNAS1279F0.29
BLCAchr852656841Missense_MutationnovelQ996H0.31
BLCAchr852656192Missense_MutationnovelE1213K0.28
BLCAchr852657170Missense_MutationnovelE887Q0.22
BLCAchr852657508Missense_MutationnovelS774N0.58
BLCAchr852657144SilentnovelL895L0.23
BLCAchr852628132Missense_MutationnovelD1512E0.36
BLCAchr852657463Missense_MutationnovelG789E0.43
BLCAchr852642738Missense_MutationnovelL1354F0.07
BLCAchr852658075Missense_MutationnovelL615I0.08
BLCAchr852661596Missense_Mutationrs750998543I433V0.8
BLCAchr852642521SilentnovelV1389V0.21
BRCAchr852657292Missense_MutationNAN846S0.35
BRCAchr852657093Nonsense_MutationnovelE912Dfs*50.08
BRCAchr852683721Splice_SiteNAX67_splice0.29
BRCAchr852656630Nonsense_MutationNAK1067*0.3
BRCAchr852636063SilentNAN1448N0.37
BRCAchr8526237043'UTRnovel0.23
BRCAchr852673855Missense_Mutationrs145052579S331F0.17
BRCAchr8526228973'UTRnovel0.08
BRCAchr852657823Missense_MutationNAR669I0.4
BRCAchr852656316Frame_Shift_InsNAN1171Kfs*80.21
BRCAchr852676398SilentNAS181S0.13
BRCAchr852674218Missense_MutationnovelR210K0.11
BRCAchr852645767Missense_MutationNAE1308K0.26
BRCAchr852642805Missense_MutationnovelF1332C0.04
BRCAchr852656401Missense_MutationNAR1143I0.13
BRCAchr852668158Missense_MutationnovelE346K0.05
BRCAchr852656082Frame_Shift_InsnovelF1249Lfs*150.01
BRCAchr852657761In_Frame_InsnovelE689_L690insVLFDVFLLV0.07
BRCAchr852660984Frame_Shift_InsnovelD523Efs*290.05
BRCAchr852661104Nonsense_MutationnovelH512_Y513insMEFSHG*KMFIKH0.06
BRCAchr852673864Missense_MutationnovelC328F0.1
BRCAchr852630497Missense_MutationNAR1491K0.35
CESCchr852657880Missense_MutationnovelS650C0.43
CESCchr852657328Nonsense_MutationNAS834*0.24
CESCchr852674168Missense_MutationNAE227Q0.26
CESCchr8526236613'UTRnovel0.59
CESCchr852674129Missense_MutationnovelL240M0.07
CESCchr852657767Missense_MutationNAE688K0.25
CESCchr852657900SilentNAV643V0.29
CESCchr852660942SilentnovelS537S0.29
CESCchr852673904Nonsense_MutationnovelQ315*0.65
CESCchr852685399Missense_MutationnovelT24I0.39
CESCchr8526227963'UTRnovel0.28
CESCchr852642559Missense_Mutationrs375185081R1377C0.27
CESCchr852656045Missense_MutationnovelE1262Q0.36
CESCchr852668041Missense_MutationnovelE385K0.32
CESCchr8526235893'UTRnovel0.5
CESCchr8526237113'UTRnovel0.15
CHOLchr852656093SilentnovelL1246L0.47
CHOLchr852642373Missense_MutationnovelE1439Q0.52
COADchr852673935Frame_Shift_DelnovelF304Lfs*60.47
COADchr852668142Missense_MutationNAI351N0.26
COADchr852674234SilentnovelL205L0.1
COADchr852657154Missense_MutationNAI892S0.31
COADchr852657420SilentnovelV803V0.22
COADchr852656695Missense_MutationNAE1045G0.37
COADchr852656937Frame_Shift_InsNAL965Afs*40.35
COADchr852668151Missense_Mutationrs143749402R348H0.41
COADchr852661148Missense_MutationnovelL498V0.32
COADchr852656938Frame_Shift_DelNAK964Sfs*130.31
COADchr852657517Missense_Mutationrs753833588A771V0.23
COADchr852657502Missense_Mutationrs775302732R776Q0.4
COADchr852660644Frame_Shift_InsnovelL547Ffs*70.05
COADchr852656214Nonsense_MutationnovelY1205*0.45
COADchr852657213Frame_Shift_InsNAN872Kfs*20.31
COADchr852676513Missense_MutationNAE143A0.26
COADchr852661214Missense_Mutationrs746797101V476I0.22
COADchr852685399Missense_MutationnovelT24I0.15
COADchr852623812SilentNAV1585V0.2
COADchr852642414Missense_MutationnovelA1425V0.05
COADchr852657268Missense_MutationnovelS854Y0.04
COADchr852658033Missense_MutationNAS629A0.13
COADchr852656449Missense_MutationNAT1127N0.23
COADchr852661188In_Frame_InsnovelK484delinsNKHTP0.08
DLBCchr852642770Nonsense_MutationnovelE1344*0.37
ESCAchr852673983Silentrs747652097Q288Q0.27
ESCAchr852642425SilentnovelS1421S0.15
ESCAchr852661623Missense_MutationnovelL424M0.12
ESCAchr8526230193'UTRnovel0.3
ESCAchr8526233603'UTRnovel0.12
ESCAchr852657453SilentnovelT792T0.43
GBMchr852656366Missense_MutationnovelL1155I0.36
GBMchr852658894Missense_Mutationrs776111804S591L0.23
GBMchr852642559Missense_Mutationrs375185081R1377C0.47
GBMchr852642437SilentnovelL1417L0.07
GBMchr852674007SilentnovelE280E0.08
GBMchr852628132Silentrs375798667D1512D0.33
GBMchr852660988Missense_Mutationrs766968433K522R0.22
GBMchr852673876Frame_Shift_DelnovelL324Wfs*90.21
GBMchr852658042Missense_MutationnovelD626N0.51
GBMchr852656185Frame_Shift_DelnovelK1214Tfs*160.36
GBMchr852657230Missense_MutationnovelL867I0.18
GBMchr852685441Missense_MutationnovelT10N0.27
GBMchr852657733Missense_MutationNAT699M0.36
HNSCchr852658000Nonsense_MutationnovelK640*0.26
HNSCchr852673990Missense_MutationnovelV286A0.24
HNSCchr852674145Frame_Shift_DelnovelM234Ifs*220.06
HNSCchr852657813SilentnovelP672P0.13
HNSCchr852661220Missense_Mutationrs151174558R474C0.19
HNSCchr852657001Missense_MutationnovelS943F0.24
HNSCchr852661136Missense_MutationnovelE502K0.22
HNSCchr852657230Missense_MutationnovelL867V0.18
HNSCchr852656804Missense_MutationnovelD1009Y0.1
HNSCchr852683689Missense_MutationnovelE77Q0.56
KIRCchr852657404Missense_MutationnovelH809N0.25
KIRCchr852630526Missense_MutationnovelM1481I0.3
KIRCchr852673947Missense_MutationNAD300E0.59
KIRCchr852642365SilentNAS1441S0.26
KIRPchr852656274SilentnovelS1185S0.12
KIRPchr852657447SilentNAL794L0.34
KIRPchr852683896SilentnovelS63S0.28
KIRPchr852642537Missense_MutationNAK1384T0.41
LGGchr852657494Missense_Mutationrs368359280D779N0.26
LGGchr852683640Missense_Mutationrs757154137S93L0.2
LGGchr852656999Missense_MutationNAQ944E0.35
LGGchr852674239Missense_MutationnovelP203Q0.09
LIHCchr852642558Missense_Mutationrs768037976R1377H0.29
LIHCchr852683942Missense_Mutationrs766400698N48S0.49
LIHCchr852628158Nonsense_MutationnovelG1504*0.51
LIHCchr852628159SilentnovelV1503V0.52
LIHCchr852628170Splice_SiteNAX1500_splice0.3
LIHCchr852623785Silentrs145350535V1594V0.18
LIHCchr852656965Missense_MutationNAR955Q0.04
LIHCchr852660595Splice_SiteNAX563_splice0.7
LUADchr852628127Missense_MutationnovelR1514L0.16
LUADchr852656855Missense_MutationnovelE992K0.07
LUADchr852656574SilentNAQ1085Q0.18
LUADchr852642390Missense_MutationnovelR1433I0.09
LUADchr852634935SilentNAL1476L0.25
LUADchr8526854825'UTRnovel0.33
LUADchr852656369Missense_MutationnovelE1154K0.14
LUADchr852657039Frame_Shift_InsnovelD931Gfs*170.1
LUADchr852645797Nonsense_MutationnovelE1298*0.27
LUADchr852657211Missense_MutationNAE873V0.2
LUADchr852657670Missense_MutationnovelD720V0.16
LUADchr852661203SilentnovelL479L0.35
LUADchr852628103Missense_MutationNAT1522S0.36
LUADchr852657210Missense_MutationnovelE873D0.17
LUADchr852674140Missense_MutationnovelR236I0.49
LUADchr852628157Missense_MutationNAG1504A0.1
LUADchr852661166Missense_MutationNAV492I0.33
LUADchr852657548Missense_MutationnovelV761L0.05
LUADchr852642717SilentNAQ1361Q0.38
LUADchr852673949Missense_Mutationrs767469821D300H0.24
LUADchr852657485Missense_MutationnovelV782I0.28
LUADchr852683719Missense_MutationnovelD67Y0.1
LUADchr852642507Missense_MutationnovelS1394I0.28
LUADchr852676431SilentNAK170K0.13
LUADchr852645711Silentrs749367208A1326A0.31
LUSCchr852676526Missense_MutationnovelL139F0.18
LUSCchr852673853Missense_MutationNAM332L0.38
LUSCchr852628128Missense_Mutationrs113117391R1514C0.21
LUSCchr852642785Nonsense_MutationnovelE1339*0.19
LUSCchr852658003Missense_MutationnovelQ639K0.07
LUSCchr852668062Missense_MutationnovelS378C0.4
LUSCchr852657883Nonsense_MutationnovelQ649delinsLKKLGE*0.13
LUSCchr852656468Missense_MutationnovelG1121C0.43
LUSCchr852656829SilentnovelI1000I0.16
LUSCchr852656737Missense_MutationnovelS1031F0.22
LUSCchr852656006Splice_SiteNAX1274_splice0.52
LUSCchr852660972SilentNAL527L0.26
LUSCchr852660987SilentNAK522K0.18
LUSCchr852656143Missense_MutationnovelQ1229R0.21
LUSCchr852656122Missense_MutationnovelC1236F0.2
LUSCchr852674069Nonsense_MutationNAK260*0.55
LUSCchr852661217Missense_MutationnovelL475F0.06
LUSCchr852642536Missense_MutationnovelK1384N0.09
LUSCchr852661248SilentnovelQ464Q0.1
LUSCchr852657680Missense_MutationNAV717I0.59
LUSCchr852656888Nonsense_MutationnovelQ981*0.28
OVchr852657630Missense_MutationNAM733I0.07
OVchr852657733Missense_MutationNAT699M0.43
OVchr852673900Missense_MutationNAD316G0.15
OVchr852642523In_Frame_Delrs751297061E1388del0.62
OVchr852642526Nonsense_MutationNAE1388*0.42
OVchr852674088Silentrs756655906S253S0.11
OVchr852642529Nonsense_MutationNAE1387*0.53
OVchr852642457Nonsense_MutationNAG1411*0.51
OVchr852656060In_Frame_DelNAV1256del0.67
OVchr852660636Missense_MutationNAR550L0.09
OVchr852657782Missense_MutationNAA683T0.14
PAADchr852642558Missense_Mutationrs768037976R1377H0.05
PAADchr8526236983'UTRnovel0.16
PAADchr852661162Missense_MutationnovelP493H0.23
PAADchr852661605Missense_MutationnovelL430M0.19
PAADchr852683671Missense_MutationNAR83C0.17
PAADchr852656316Frame_Shift_InsNAN1171Kfs*80.24
READchr852636035Missense_MutationnovelR1458W0.22
READchr852676487Missense_MutationnovelA152T0.21
READchr852656607SilentnovelI1074I0.07
READchr852645716Missense_Mutationrs774629394I1325V0.17
READchr852657359Missense_MutationnovelT824A0.15
READchr852685458Nonsense_MutationnovelY4*0.16
READchr852657733Missense_MutationNAT699M0.04
READchr852674191Missense_MutationnovelR219K0.07
READchr852657188Missense_MutationNAL881I0.45
READchr852683916Nonsense_MutationNAR57*0.42
READchr852656535SilentNAE1098E0.53
READchr852628115Missense_MutationnovelY1518C0.11
READchr852656876Nonsense_MutationnovelQ985*0.28
SARCchr8526228663'UTRnovel0.25
SARCchr8526225993'UTRnovel0.41
SKCMchr852660602SilentNAS561S0.2
SKCMchr852657797Missense_Mutationrs747970098D678N0.07
SKCMchr852658892Missense_MutationnovelE592K0.38
SKCMchr852658893Silentrs187858160S591S0.37
SKCMchr852676499Nonsense_MutationNAQ148*0.04
SKCMchr852673879Missense_MutationnovelS323F0.17
SKCMchr852645767Missense_MutationNAE1308K0.43
SKCMchr852661547Missense_MutationnovelH449L0.52
SKCMchr8526237433'UTRnovel0.47
SKCMchr852661136Nonsense_MutationnovelE502*0.05
SKCMchr852645728Nonsense_MutationNAR1321*0.29
SKCMchr852673894Missense_MutationNAP318L0.19
SKCMchr852674071Missense_MutationNAP259L0.18
SKCMchr852683709Missense_MutationnovelP70L0.23
SKCMchr852656673Missense_MutationnovelD1052E0.29
SKCMchr852660943Missense_MutationNAS537F0.5
SKCMchr852668053Nonsense_MutationNAR381*0.5
SKCMchr852642564Missense_MutationNAR1375Q0.38
SKCMchr852657888SilentNAS647S0.16
SKCMchr852668110Missense_MutationnovelI362F0.54
SKCMchr852668074Nonsense_MutationNAQ374*0.55
SKCMchr852660637Missense_Mutationrs770511277R550C0.25
SKCMchr852683983SilentNAS34S0.09
SKCMchr8526237653'UTRnovel0.25
SKCMchr852660943Missense_MutationNAS537F0.35
SKCMchr852658898Missense_MutationNAP590S0.29
STADchr852683670Missense_MutationNAR83H0.22
STADchr852656317Frame_Shift_DelnovelN1171Tfs*20.18
STADchr852656175Frame_Shift_DelnovelK1218Nfs*130.28
STADchr852660611Missense_MutationnovelW558C0.12
STADchr852660612Missense_MutationnovelW558S0.11
STADchr852636058Missense_Mutationrs775020996H1450R0.22
STADchr852657716Missense_MutationnovelI705V0.1
STADchr852661582SilentnovelC437C0.08
STADchr852657279Frame_Shift_Delrs772155322V851*0.23
STADchr852656610SilentNAE1073E0.17
STADchr852656317Frame_Shift_DelnovelN1171Tfs*20.16
STADchr852661191SilentNAV483V0.34
STADchr852683639Silentrs374755456S93S0.47
STADchr852656635Missense_MutationNAA1065V0.26
STADchr852657393SilentNAI812I0.04
STADchr852660644Frame_Shift_InsnovelL547Ffs*70.21
STADchr852628072SilentNAS1532S0.09
STADchr852660979Missense_MutationNAK525T0.14
STADchr852656767Missense_MutationnovelN1021T0.39
STADchr852656938Frame_Shift_DelNAK964Sfs*130.1
STADchr852656214Silentrs771579613Y1205Y0.22
STADchr852656317Frame_Shift_DelnovelN1171Tfs*20.2
STADchr852656938Frame_Shift_DelNAK964Sfs*130.23
STADchr852657147Frame_Shift_DelnovelK894Nfs*20.26
STADchr852657996Splice_SitenovelX640_splice0.24
STADchr852656938Frame_Shift_DelNAK964Sfs*130.27
STADchr852661214Missense_Mutationrs746797101V476I0.3
THCAchr852658939Missense_MutationnovelD576G0.22
THYMchr852656756Frame_Shift_DelnovelN1021Lfs*220.11
UCECchr852623833Frame_Shift_InsnovelL1578Ffs*150.29
UCECchr852657517Missense_Mutationrs753833588A771V0.13
UCECchr852645728Nonsense_MutationNAR1321*0.28
UCECchr852656213Missense_Mutationrs569632839E1206K0.33
UCECchr852657393Missense_MutationNAI812M0.36
UCECchr852657890Missense_MutationNAS647P0.28
UCECchr852656034SilentNAK1265K0.32
UCECchr852657733Missense_MutationNAT699M0.31
UCECchr852636035Missense_MutationnovelR1458W0.21
UCECchr852676373Missense_MutationnovelT190A0.06
UCECchr852657133Missense_MutationnovelL899S0.31
UCECchr852661205SilentnovelL479L0.48
UCECchr852683963Missense_MutationnovelQ41R0.45
UCECchr8526235723'UTRnovel0.37
UCECchr852661219Missense_Mutationrs142146940R474H0.42
UCECchr852683671Missense_MutationNAR83C0.48
UCECchr8526225823'UTRnovel0.53
UCECchr852674110Missense_Mutationrs768671411M246T0.31
UCECchr8526234963'UTRnovel0.13
UCECchr852673851Missense_MutationnovelM332I0.04
UCECchr852645728Nonsense_MutationNAR1321*0.23
UCECchr852656194Nonsense_MutationnovelN1211_L1212insHSIKPAV*KHLSSTEKYEAIIQN0.07
UCECchr8526237363'UTRnovel0.13
UCECchr852661186Missense_MutationNAI485S0.16
UCECchr852642712Missense_Mutationrs765476878R1363Q0.48
UCECchr852656249Missense_MutationNAK1194Q0.39
UCECchr852642371SilentnovelE1439E0.16
UCECchr852656756Missense_MutationNAI1025L0.33
UCECchr852661719Nonsense_MutationNAG392*0.28
UCECchr852683640Missense_Mutationrs757154137S93L0.2
UCECchr852657006Missense_MutationnovelM941I0.2
UCECchr852674244SilentnovelK201K0.22
UCECchr852683558Silentrs140310406Q120Q0.19
UCECchr852656774Missense_MutationNAK1019Q0.63
UCECchr852661235Missense_MutationNAL469V0.55
UCECchr852676449SilentNAY164Y0.46
UCECchr8526232403'UTRnovel0.38
UCECchr852642510Missense_Mutationrs779306294R1393H0.54
UCECchr852683689Nonsense_MutationNAE77*0.32
UCECchr852656600Missense_MutationNAL1077V0.58
UCECchr852661649Missense_MutationnovelS415N0.19
UCECchr852676369Missense_MutationnovelH191P0.13
UCECchr852685434SilentnovelT12T0.4
UCECchr852657509Missense_MutationnovelS774G0.13
UCECchr852661194SilentnovelR482R0.25
UCECchr852657034Missense_MutationnovelQ932R0.15
UCECchr8526236473'UTRnovel0.4
UCECchr852660637Missense_Mutationrs770511277R550C0.35
UCECchr852673948Missense_MutationnovelD300G0.27
UCECchr8526233533'UTRnovel0.15
UCECchr852657522SilentnovelI769I0.45
UCECchr852656390Nonsense_MutationnovelE1147*0.54
UCECchr852657064Missense_MutationnovelA922D0.44
UCECchr852657592Missense_Mutationrs756595819S746L0.4
UCECchr852683631Missense_MutationNAN96S0.04
UCECchr852656415Silentrs768303261S1138S0.69
UCECchr852656857Nonsense_MutationnovelL991*0.34
UCECchr852645842Missense_MutationnovelD1283Y0.2
UCECchr852657364Missense_MutationNAF822C0.33
UCECchr852673850Missense_MutationnovelS333R0.46
UCECchr8526237503'UTRnovel0.46
UCECchr852645728Nonsense_MutationNAR1321*0.24
UCECchr852656737Missense_MutationnovelS1031Y0.39
UCECchr852656006Splice_SiteNAX1274_splice0.27
UCECchr852656379Missense_MutationnovelI1150M0.36
UCECchr852656511SilentnovelK1106K0.32
UCECchr852657858SilentnovelE657E0.22
UCECchr852674208SilentnovelY213Y0.28
UCECchr852683578Missense_MutationnovelT114A0.18
UCECchr852628106Frame_Shift_InsnovelF1521Sfs*530.12
UCECchr852645728Nonsense_MutationNAR1321*0.22
UCECchr852683640Missense_Mutationrs757154137S93L0.26
UCECchr852645829Missense_MutationnovelL1287S0.44
UCECchr852657580Missense_MutationnovelP750H0.48
UCECchr852657093Frame_Shift_InsnovelE912Dfs*160.13
UCECchr852656077Missense_Mutationrs762519571L1251S0.19
UCECchr8526237583'UTRrs5418718260.26
UCECchr852642492Missense_MutationnovelP1399H0.32
UCECchr852656661Silentrs369925562T1056T0.3
UCECchr852636063SilentNAN1448N0.22
UCECchr852656051Missense_MutationnovelL1260V0.08
UCECchr852674165Missense_MutationnovelD228Y0.41
UCECchr852683639Silentrs374755456S93S0.4
UCECchr852674213Frame_Shift_DelnovelH211Qfs*140.35
UCECchr852674093Nonsense_MutationNAE252*0.28
UCECchr852656225Missense_MutationnovelE1202K0.42
UCECchr852683548Splice_SitenovelX123_splice0.2
UCECchr852656938Frame_Shift_DelNAK964Sfs*130.5
UCECchr8526231003'UTRnovel0.28
UCECchr852657146SilentnovelL895L0.11
UCECchr852668178Missense_MutationnovelI339S0.3
UCECchr8526226983'UTRnovel0.23
UCECchr852636058Missense_Mutationrs775020996H1450R0.19
UCECchr852673949Missense_MutationnovelD300N0.08
UCECchr852656437Frame_Shift_InsnovelI1131Rfs*130.13
UCECchr852657803Missense_MutationnovelV676L0.07
UCECchr852657805Frame_Shift_InsnovelT675Nfs*180.07
UCECchr852645703Missense_MutationNAQ1329R0.07
UCECchr852656249Frame_Shift_InsnovelK1194*0.04
UCECchr852656250Nonsense_MutationnovelQ1193_K1194ins*0.04
UCECchr852657093Nonsense_MutationnovelE912_F913insILVFD*L0.08
UCECchr852642406Frame_Shift_DelnovelT1428Qfs*150.12
UCECchr852657040Frame_Shift_DelnovelK930Rfs*60.22
UCECchr852657389Missense_MutationnovelT814P0.36
UCECchr852683670Missense_MutationNAR83H0.26
UCECchr8526225033'UTRnovel0.6
UCECchr852657173Missense_MutationNAE886K0.47
UCECchr8526237463'UTRnovel0.34
UCECchr852656111Nonsense_MutationnovelE1240*0.13
UCECchr852645728Nonsense_MutationNAR1321*0.42
UCECchr852624776Frame_Shift_InsnovelS1550Rfs*60.09
UCECchr852636062Missense_Mutationrs767180126I1449V0.15
UCECchr852645867Missense_MutationnovelS1274R0.35
UCECchr8526233533'UTRnovel0.5
UCECchr852645728Nonsense_MutationNAR1321*0.5
UCECchr852683634Frame_Shift_DelnovelE95Kfs*20.32
UCECchr852674009Missense_MutationnovelE280K0.34
UCECchr852624738SilentnovelK1562K0.41
UCECchr852676495Missense_MutationNAG149D0.25
UCECchr8526237443'UTRnovel0.28
UCECchr8526225543'UTRnovel0.63
UCECchr8526226653'UTRnovel0.42
UCECchr852673969Missense_Mutationrs202008366T293M0.3
UCECchr852683670Missense_MutationNAR83H0.31
UCECchr8526231433'UTRnovel0.38
UCECchr852656214Silentrs771579613Y1205Y0.38
UCECchr852657083Missense_MutationnovelV916I0.4
UCSchr852673940Missense_Mutationrs772801563F303L0.71

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
READDEL0.03640.20625
UCSAMP0.58934.2724e-06

Survival Analysis
CancerP-value Q-value
KIRC0.017

Kaplan-Meier Survival Analysis

STAD0.039

Kaplan-Meier Survival Analysis

SARC0.041

Kaplan-Meier Survival Analysis

MESO0.035

Kaplan-Meier Survival Analysis

ACC0.027

Kaplan-Meier Survival Analysis

HNSC0.027

Kaplan-Meier Survival Analysis

SKCM0.0002

Kaplan-Meier Survival Analysis

BRCA0.015

Kaplan-Meier Survival Analysis

KIRP0.00014

Kaplan-Meier Survival Analysis

PAAD0.01

Kaplan-Meier Survival Analysis

LAML0.0069

Kaplan-Meier Survival Analysis

KICH0.0027

Kaplan-Meier Survival Analysis

UCEC0.0011

Kaplan-Meier Survival Analysis

LGG0.011

Kaplan-Meier Survival Analysis

LUAD0.04

Kaplan-Meier Survival Analysis

UVM0.045

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000023287 (Gene tree)
Gene ID
9821
Gene Symbol
RB1CC1
Alias
KIAA0203|Cc1|DRAGOU14|FIP200|ATG17|PPP1R131
Full Name
RB1 inducible coiled-coil 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
123,388 bases
Position
chr8:52,622,456-52,745,843
Accession
15574
RBP type
non-canonical RBP
Summary
The protein encoded by this gene interacts with signaling pathways to coordinately regulate cell growth, cell proliferation, apoptosis, autophagy, and cell migration. This tumor suppressor also enhances retinoblastoma 1 gene expression in cancer cells. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Nov 2009]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
29130360Autophagy and innate immunity: Insights from invertebrate model organisms.Autophagy2018Kuo CJdoi: 10.1080/15548627.2017.1389824
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000025008RB1CC1-2016635XM_011517643ENSP000000250081594 (aa)XP_011515945Q8TDY2
ENST00000522957RB1CC1-2091297--- (aa)--
ENST00000518710RB1CC1-206711-ENSP0000042987952 (aa)-E5RH63
ENST00000521611RB1CC1-208528--- (aa)--
ENST00000518468RB1CC1-205507-ENSP0000042961115 (aa)-E5RHX0
ENST00000517963RB1CC1-203551-ENSP0000042991872 (aa)-E5RH44
ENST00000518211RB1CC1-204891-ENSP0000042911542 (aa)-E5RJC1
ENST00000523594RB1CC1-210560-ENSP00000430792109 (aa)-H0YC28
ENST00000519912RB1CC1-207470-ENSP00000430809127 (aa)-H0YC30
ENST00000435644RB1CC1-2026614XM_011517645ENSP000003960671591 (aa)XP_011515947Q8TDY2
Gene Model
Click here to download ENSG00000023287's gene model file
Pathways
Pathway IDPathway NameSource
hsa04140Autophagy - animalKEGG
hsa04211Longevity regulating pathwayKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000023287Body Weights and Measures4.405e-00517658951
ENSG00000023287Testosterone2.6590000E-005-
ENSG00000023287Menarche1E-825231870
ENSG00000023287Leptin3E-723251661
ENSG00000023287Blood Pressure7E-626969751
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000023287's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000045autophagosome assembly21873635.IBAProcess
GO:0000407phagophore assembly site28561066.IDAComponent
GO:0000422autophagy of mitochondrion21873635.IBAProcess
GO:0001889liver development-IEAProcess
GO:0001934positive regulation of protein phosphorylation21873635.IBAProcess
GO:0005515protein binding19211835.19597335.20562859.21903422.23262492.23392225.23524951.25686248.27334615.28561066.29950492.IPIFunction
GO:0005764lysosome28561066.IDAComponent
GO:0005789endoplasmic reticulum membrane-TASComponent
GO:0005829cytosol-IDAComponent
GO:0005829cytosol-TASComponent
GO:0006914autophagy-ISSProcess
GO:0007049cell cycle-IEAProcess
GO:0007507heart development-IEAProcess
GO:0016236macroautophagy-TASProcess
GO:0016241regulation of macroautophagy-TASProcess
GO:0019898extrinsic component of membrane21873635.IBAComponent
GO:0019901protein kinase binding21873635.IBAFunction
GO:0030242autophagy of peroxisome21873635.IBAProcess
GO:0031965nuclear membrane-IDAComponent
GO:0034045phagophore assembly site membrane21873635.IBAComponent
GO:0034045phagophore assembly site membrane-ISSComponent
GO:0034727piecemeal microautophagy of the nucleus21873635.IBAProcess
GO:0045793positive regulation of cell size-IEAProcess
GO:0046330positive regulation of JNK cascade-IEAProcess
GO:0060090molecular adaptor activity21873635.IBAFunction
GO:0061709reticulophagy21873635.IBAProcess
GO:0061723glycophagy21873635.IBAProcess
GO:1990316Atg1/ULK1 kinase complex21873635.IBAComponent
GO:1990316Atg1/ULK1 kinase complex19211835.IPIComponent
GO:2001237negative regulation of extrinsic apoptotic signaling pathway-IEAProcess
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