EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
28241827MicroRNA-30d promotes angiogenesis and tumor growth via MYPT1/c-JUN/VEGFA pathway and predicts aggressive outcome in prostate cancer.Mol Cancer2017 Feb 27Lin ZYdoi: 10.1186/s12943-017-0615-x.
18079119Green tea polyphenol epigallocatechin-3-gallate signaling pathway through 67-kDa laminin receptor.J Biol Chem2008 Feb 8Umeda D-

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr1279934965Intronnovel0.47
BLCAchr1279809940Missense_MutationnovelR437M0.44
BLCAchr1279872926Missense_MutationNAD84H0.11
BLCAchr1279806295Missense_MutationNAS565C0.16
BLCAchr1279806319Missense_MutationnovelR557K0.2
BLCAchr1279808570Missense_MutationNAD488G0.23
BLCAchr1279805622Missense_MutationnovelS657F0.31
BRCAchr12797745993'UTRnovel0.38
BRCAchr1279935175Intronnovel0.25
BRCAchr1279935002Intronnovel0.6
BRCAchr12797751163'UTRnovel0.42
BRCAchr1279797208Missense_MutationNAR760K0.11
BRCAchr1279872819SilentNAL119L0.29
BRCAchr12797758293'UTRnovel0.22
BRCAchr1279806204Missense_MutationnovelK595N0.14
BRCAchr1279797276Frame_Shift_DelnovelK737Rfs*130.09
BRCAchr1279820816Missense_MutationNAE358K0.11
BRCAchr1279793892Nonsense_MutationNAE874*0.31
BRCAchr1279805708Silentrs761972298T628T0.28
BRCAchr1279797351SilentnovelG712G0.08
BRCAchr1279820927Missense_MutationNAE321Q0.25
BRCAchr1279821152Frame_Shift_DelNAK294Nfs*80.18
BRCAchr1279796894SilentnovelS783S0.04
CESCchr1279820893Missense_MutationNAS332F0.12
CESCchr1279795740SilentnovelE827E0.21
CESCchr1279798504Missense_MutationNAR694T0.29
CESCchr1279805592Missense_MutationnovelR667I0.47
CESCchr1279872863Missense_MutationNAE105K0.21
CESCchr1279797344Missense_MutationNAR715C0.45
CESCchr1279935116Intronnovel0.46
CESCchr12797756673'UTRnovel0.57
CESCchr1279832399Missense_MutationnovelR194W0.28
CESCchr1279797254Missense_MutationNAE745Q0.24
CESCchr1279795669Missense_MutationnovelR851K0.04
CHOLchr12797756673'UTRnovel0.41
COADchr1279934965Intronnovel0.44
COADchr1279798536SilentNAK683K0.18
COADchr1279796824Missense_MutationnovelT807P0.28
COADchr1279832388Missense_MutationNAK197N0.28
COADchr1279934859Missense_MutationnovelE25K0.5
COADchr1279934965Intronnovel0.23
COADchr1279934726Missense_MutationNAA69V0.27
COADchr12799349365'UTRnovel0.41
COADchr1279786424Missense_MutationnovelT953A0.4
COADchr1279797389Missense_MutationNAT700S0.27
COADchr1279807262Frame_Shift_Delrs776166170N540Ifs*230.49
COADchr1279809922Missense_Mutationrs751773876T443M0.22
COADchr12797759183'UTRnovel0.73
COADchr1279934740SilentnovelA64A0.33
ESCAchr1279788582Intronnovel0.37
ESCAchr1279807313Missense_Mutationrs202164787R523Q0.74
ESCAchr1279788678SilentnovelL924L0.09
GBMchr1279820922SilentnovelT322T0.33
GBMchr1279934798Missense_MutationnovelL45Q0.19
GBMchr1279797372SilentNAQ705Q0.45
HNSCchr1279788779Missense_MutationnovelE891K0.29
HNSCchr1279832456Missense_MutationnovelR175W0.15
HNSCchr1279809942Missense_MutationnovelW436C0.45
HNSCchr1279809912SilentnovelY446Y0.68
HNSCchr1279845350Missense_MutationnovelE147Q0.28
HNSCchr1279817462Missense_Mutationrs551709799A391T0.21
KIRCchr1279788690Nonsense_MutationnovelY920*0.21
KIRPchr1279809989Missense_MutationNAI421L0.32
KIRPchr1279820824Missense_MutationnovelC355Y0.25
KIRPchr1279788771SilentnovelS893S0.38
LGGchr1279806204Missense_MutationnovelK595N0.09
LGGchr1279807267Missense_MutationnovelK538N0.25
LIHCchr1279934965Intronnovel0.36
LIHCchr1279788634Intronnovel0.27
LIHCchr1279805769Splice_SiteNAX608_splice0.18
LIHCchr1279934822Missense_MutationnovelK37R0.38
LUADchr1279821108Missense_MutationNAD309G0.22
LUADchr1279828423Missense_MutationnovelY230C0.25
LUADchr1279796823Missense_Mutationrs761550105T807I0.26
LUADchr1279820841Missense_MutationnovelK349N0.12
LUADchr1279805707Missense_MutationnovelA629S0.67
LUADchr1279805708Silentrs761972298T628T0.65
LUADchr1279795664Missense_MutationNAT853A0.5
LUSCchr1279796943Missense_MutationnovelQ767R0.08
LUSCchr1279809855SilentNAA465A0.28
LUSCchr1279788735SilentnovelL905L0.12
LUSCchr1279805622Missense_MutationnovelS657F0.24
LUSCchr1279788599Intronnovel0.37
LUSCchr1279796803Missense_MutationnovelI814L0.11
LUSCchr1279788664Missense_MutationnovelS929L0.17
MESOchr1279808562Missense_MutationnovelG491R0.38
OVchr12797757993'UTRnovel0.11
OVchr1279805655Missense_MutationNAT646R0.31
OVchr1279797300Missense_MutationnovelK729N0.05
OVchr1279822156Missense_MutationNAI276T0.48
OVchr1279845352Missense_MutationNAA146V0.05
OVchr1279786426Missense_MutationnovelD952V0.09
OVchr12797757103'UTRnovel0.56
OVchr1279806325Missense_MutationnovelF555C0.06
PRADchr1279788743Missense_MutationnovelS903A0.39
READchr1279790482Missense_Mutationrs764281068T884M0.41
READchr1279820827Missense_MutationNAS354I0.14
SARCchr1279805748Missense_MutationNAA615V0.29
SARCchr12797751723'UTRnovel0.21
SARCchr1279806174Silentrs374310208T605T0.26
SKCMchr1279809955Missense_MutationNAS432F0.3
SKCMchr1279872827Nonsense_MutationNAG117*0.09
SKCMchr1279809819SilentNAS477S0.34
SKCMchr1279788731Missense_MutationNAR907C0.23
SKCMchr1279845308Missense_MutationNAR161W0.48
SKCMchr1279808523SilentnovelR504R0.25
SKCMchr1279872858SilentNAG106G0.23
SKCMchr1279832447Missense_Mutationrs766758074L178F0.39
STADchr1279820787SilentNAS367S0.23
STADchr1279820900Missense_MutationNAN330H0.3
STADchr1279809826Missense_MutationnovelR475K0.16
STADchr1279796810SilentNAS811S0.26
STADchr1279788594Intronnovel0.4
STADchr1279793916Missense_MutationnovelE866K0.27
STADchr1279817486Missense_MutationNAA383T0.13
UCECchr1279935042Intronnovel0.44
UCECchr1279820881Missense_MutationNAS336Y0.3
UCECchr1279820809Missense_MutationnovelD360V0.31
UCECchr1279786400Missense_MutationnovelK961E0.38
UCECchr1279821108Missense_MutationNAD309G0.25
UCECchr1279934972Intronnovel0.07
UCECchr1279778654Intronnovel0.21
UCECchr12797745353'UTRnovel0.32
UCECchr1279820789Missense_MutationnovelS367A0.39
UCECchr1279872860Missense_MutationnovelG106S0.43
UCECchr1279795747Frame_Shift_InsnovelR825Kfs*100.44
UCECchr1279821152Frame_Shift_DelNAK294Nfs*80.28
UCECchr1279807262Frame_Shift_Delrs776166170N540Ifs*230.43
UCECchr1279872937Missense_MutationnovelA80D0.43
UCECchr1279845353Missense_MutationnovelA146S0.18
UCECchr1279788485Intronnovel0.5
UCECchr1279775962SilentnovelA1020A0.5
UCECchr1279788613Intronnovel0.39
UCECchr1279797359Missense_MutationnovelT710A0.41
UCECchr1279806330Nonsense_MutationnovelC553*0.38
UCECchr12797743703'UTRnovel0.26
UCECchr1279778608Splice_Regionnovel0.21
UCECchr12797748223'UTRnovel0.35
UCECchr1279805706Missense_MutationnovelA629V0.43
UCECchr1279822151Frame_Shift_InsnovelG278Wfs*150.04
UCECchr1279822153Nonsense_MutationnovelL277*0.04
UCECchr1279778771Intronnovel0.06
UCECchr12797747063'UTRnovel0.29
UCECchr12797756673'UTRnovel0.55
UCECchr1279778733Intronnovel0.33
UCECchr1279817407Missense_MutationNAS409L0.16
UCECchr12797751723'UTRnovel0.5
UCECchr1279934965Intronnovel0.4
UCECchr1279820794Missense_Mutationrs370507874S365L0.22
UCECchr12797747143'UTRnovel0.47
UCECchr1279797205Missense_MutationNAT761M0.37
UCECchr1279934965Intronnovel0.47
UCECchr1279809978SilentNAK424K0.38
UCECchr1279822157Missense_Mutationrs771702951I276V0.41
UCECchr1279934869Missense_MutationnovelE21D0.17
UCECchr12797746213'UTRrs1119546070.45
UCECchr12797756673'UTRnovel0.5
UCECchr1279832360Missense_MutationNAA207S0.35
UCECchr12797747933'UTRnovel0.44
UCECchr12797753373'UTRnovel0.46
UCECchr1279788652Missense_MutationnovelK933R0.32
UCECchr1279788769Missense_MutationnovelS894Y0.41
UCECchr12797757523'UTRnovel0.56
UCECchr1279807262Frame_Shift_Delrs776166170N540Ifs*230.4
UCECchr1279935006Intronnovel0.9
UCECchr1279797205Missense_MutationNAT761M0.38
UCECchr1279934965Intronnovel0.44
UCECchr1279796876Missense_MutationNAS789R0.46
UCECchr12797757263'UTRnovel0.36
UCECchr1279832470Missense_MutationNAR170Q0.37
UCECchr1279805767Missense_MutationnovelT609A0.38
UCECchr1279822145SilentnovelL280L0.33
UCECchr12797753933'UTRnovel0.3
UCECchr1279845417Missense_MutationnovelF124L0.16
UCECchr12797745993'UTRnovel0.36
UCECchr12797751723'UTRnovel0.31
UCECchr1279935006Intronnovel0.53
UCECchr1279845343Missense_MutationnovelE149G0.25
UCECchr1279795694Nonsense_MutationnovelR843*0.2
UCECchr1279821089Missense_MutationnovelK315N0.24
UCECchr1279778608Splice_Regionnovel0.3
UCECchr1279788569Intronnovel0.44
UCECchr1279935024Intronnovel0.44
UCECchr1279828403Missense_MutationnovelH237N0.05
UCECchr12797745263'UTRnovel0.13
UCECchr1279806287Missense_MutationnovelP568S0.33
UCECchr12797746123'UTRnovel0.26
UCECchr12797757883'UTRnovel0.64
UCECchr1279934965Intronnovel0.12
UCECchr12797745433'UTRnovel0.25
UCECchr1279934965Intronnovel0.39
UCECchr1279778636Intronnovel0.37
UCECchr12797751723'UTRnovel0.42
UCECchr1279935200Intronnovel0.37
UCECchr1279807261Frame_Shift_InsNAN540Kfs*20.42
UCECchr1279832430Missense_MutationNAQ183H0.28
UCECchr1279809940Frame_Shift_InsnovelR437Tfs*90.05
UCECchr1279807272Missense_MutationnovelL537F0.24
UCECchr1279808575Missense_MutationnovelE486D0.23
UCECchr1279806305Missense_MutationnovelL562V0.39
UCECchr1279778649Intronnovel0.54
UCECchr1279828412Missense_MutationnovelT234A0.3
UCECchr1279788695Missense_MutationnovelP919S0.1

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCDEL0.01110.20414
ESCADEL0.17930.045584
HNSCDEL0.0670.22646
LUADDEL0.14150.0059643
PAADDEL0.18480.0030251
PRADAMP0.05690.016187
READDEL0.1030.064633
SKCMDEL0.17170.00079981

Survival Analysis
CancerP-value Q-value
THYM0.041

Kaplan-Meier Survival Analysis

KIRC0.016

Kaplan-Meier Survival Analysis

STAD0.036

Kaplan-Meier Survival Analysis

SKCM0.00011

Kaplan-Meier Survival Analysis

KIRP0.013

Kaplan-Meier Survival Analysis

PCPG0.044

Kaplan-Meier Survival Analysis

KICH0.017

Kaplan-Meier Survival Analysis

GBM0.036

Kaplan-Meier Survival Analysis

LIHC0.00045

Kaplan-Meier Survival Analysis

LGG0.0047

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000058272 (Gene tree)
Gene ID
4659
Gene Symbol
PPP1R12A
Alias
MBS|M130|MYPT1
Full Name
protein phosphatase 1 regulatory subunit 12A
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
161,898 bases
Position
chr12:79,773,563-79,935,460
Accession
7618
RBP type
non-canonical RBP
Summary
Myosin phosphatase target subunit 1, which is also called the myosin-binding subunit of myosin phosphatase, is one of the subunits of myosin phosphatase. Myosin phosphatase regulates the interaction of actin and myosin downstream of the guanosine triphosphatase Rho. The small guanosine triphosphatase Rho is implicated in myosin light chain (MLC) phosphorylation, which results in contraction of smooth muscle and interaction of actin and myosin in nonmuscle cells. The guanosine triphosphate (GTP)-bound, active form of RhoA (GTP.RhoA) specifically interacted with the myosin-binding subunit (MBS) of myosin phosphatase, which regulates the extent of phosphorylation of MLC. Rho-associated kinase (Rho-kinase), which is activated by GTP. RhoA, phosphorylated MBS and consequently inactivated myosin phosphatase. Overexpression of RhoA or activated RhoA in NIH 3T3 cells increased phosphorylation of MBS and MLC. Thus, Rho appears to inhibit myosin phosphatase through the action of Rho-kinase. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2009]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
14736875TIA proteins are necessary but not sufficient for the tissue-specific splicing of the myosin phosphatase targeting subunit 1.J Biol Chem2004 Apr 2Shukla S-
26864628Two distinct myosin II populations coordinate ovulatory contraction of the myoepithelial sheath in the Caenorhabditis elegans somatic gonad.Mol Biol Cell2016 Apr 1Ono Kdoi: 10.1091/mbc.E15-09-0648
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000548318PPP1R12A-209582-ENSP0000044984397 (aa)-F8VW28
ENST00000261207PPP1R12A-2015582-ENSP000002612071030 (aa)-O14974
ENST00000650220PPP1R12A-2231143-ENSP00000497229381 (aa)--
ENST00000551781PPP1R12A-219629--- (aa)--
ENST00000547131PPP1R12A-206897-ENSP00000450061299 (aa)-H0YIS4
ENST00000546369PPP1R12A-2042977-ENSP00000449514943 (aa)-O14974
ENST00000550351PPP1R12A-215738--- (aa)--
ENST00000550510PPP1R12A-216631-ENSP00000447338210 (aa)-H0YHL8
ENST00000550001PPP1R12A-211631--- (aa)--
ENST00000548908PPP1R12A-2103064--- (aa)--
ENST00000551191PPP1R12A-218602--- (aa)--
ENST00000550007PPP1R12A-212443--- (aa)--
ENST00000437004PPP1R12A-2024639XM_017019330ENSP00000416769995 (aa)XP_016874819O14974
ENST00000546762PPP1R12A-2051257-ENSP00000450059234 (aa)-H0YIS3
ENST00000550903PPP1R12A-217959-ENSP00000449647161 (aa)-H0YIL7
ENST00000553081PPP1R12A-2211101-ENSP00000447144367 (aa)-H0YHI8
ENST00000450142PPP1R12A-2035721XM_005268887ENSP000003891681030 (aa)XP_005268944O14974
ENST00000550107PPP1R12A-2132925XM_011538379ENSP00000446855974 (aa)XP_011536681O14974
ENST00000634739PPP1R12A-222560-ENSP00000489242100 (aa)-A0A0U1RQZ1
ENST00000547330PPP1R12A-2082275-ENSP00000446816692 (aa)-F8VZN8
ENST00000547253PPP1R12A-207676--- (aa)--
ENST00000550299PPP1R12A-214683-ENSP00000449666188 (aa)-H0YIM2
ENST00000552892PPP1R12A-2202277--- (aa)--
Gene Model
Click here to download ENSG00000058272's gene model file
Pathways
Pathway IDPathway NameSource
hsa04022cGMP-PKG signaling pathwayKEGG
hsa04024cAMP signaling pathwayKEGG
hsa04270Vascular smooth muscle contractionKEGG
hsa04510Focal adhesionKEGG
hsa04611Platelet activationKEGG
hsa04810Regulation of actin cytoskeletonKEGG
hsa04921Oxytocin signaling pathwayKEGG
hsa05205Proteoglycans in cancerKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000058272Body Weights and Measures7.11998451862422E-717903300
ENSG00000058272Body Weights and Measures2.96344358470478E-717903300
ENSG00000058272Platelet Function Tests4.8990600E-005-
ENSG00000058272Platelet Function Tests5.4178880E-014-
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000058272rs1131463731279784781?Velopharyngeal dysfunction29855589[NR] unit decrease0.1339413EFO_0009336
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000058272's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000058272PPP1R12A10098.148ENSMUSG00000019907Ppp1r12a10092.435Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000086G2/M transition of mitotic cell cycle-TASProcess
GO:0000278mitotic cell cycle18477460.IMPProcess
GO:0000776kinetochore18477460.IDAComponent
GO:0004857enzyme inhibitor activity21873635.IBAFunction
GO:0004857enzyme inhibitor activity19245366.IDAFunction
GO:0005515protein binding11067852.15292222.16417406.18073109.20195357.25609649.IPIFunction
GO:0005654nucleoplasm-TASComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005813centrosome18477460.IDAComponent
GO:0005829cytosol-IDAComponent
GO:0005829cytosol-TASComponent
GO:0005925focal adhesion21423176.HDAComponent
GO:0006470protein dephosphorylation18477460.IMPProcess
GO:0007098centrosome cycle18477460.IMPProcess
GO:0007165signal transduction-IEAProcess
GO:0015629actin cytoskeleton-IDAComponent
GO:0019208phosphatase regulator activity21873635.IBAFunction
GO:0019208phosphatase regulator activity20354225.IDAFunction
GO:0019208phosphatase regulator activity18477460.IMPFunction
GO:0019901protein kinase binding18477460.IPIFunction
GO:0030018Z disc21873635.IBAComponent
GO:0030018Z disc-ISSComponent
GO:0030155regulation of cell adhesion20354225.IDAProcess
GO:0031672A band21873635.IBAComponent
GO:0031672A band-ISSComponent
GO:0035507regulation of myosin-light-chain-phosphatase activity20354225.IDAProcess
GO:0035508positive regulation of myosin-light-chain-phosphatase activity21873635.IBAProcess
GO:0035508positive regulation of myosin-light-chain-phosphatase activity25816133.IMPProcess
GO:0035690cellular response to drug-IEAProcess
GO:0043086negative regulation of catalytic activity19245366.IDAProcess
GO:0043292contractile fiber20634291.IDAComponent
GO:0045944positive regulation of transcription by RNA polymerase II19245366.IDAProcess
GO:0046822regulation of nucleocytoplasmic transport-IEAProcess
GO:007188914-3-3 protein binding20354225.IDAFunction
GO:0072357PTW/PP1 phosphatase complex20354225.IDAComponent
GO:1903140regulation of establishment of endothelial barrier25816133.IMPProcess
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