EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchrX154445870Missense_MutationNAE85D0.29
BLCAchrX154445631Splice_SitenovelX38_splice0.48
BRCAchrX154448494Silentrs376854959T151T0.37
BRCAchrX154446511SilentNAG131G0.18
BRCAchrX154450232SilentNAL308L0.39
CESCchrX154450290Missense_MutationNAD328N0.37
CESCchrX154449220Splice_SitenovelX217_splice0.35
CESCchrX154445885SilentNAK90K0.11
CESCchrX154448742In_Frame_DelNAE192del0.2
CHOLchrX154450294Missense_MutationnovelP329R0.3
COADchrX154448550Missense_Mutationrs141522232R170Q0.18
COADchrX1544506183'UTRnovel1
COADchrX154448720Missense_Mutationrs782214551R184W0.17
DLBCchrX154445703Missense_MutationnovelK61R0.71
ESCAchrX154448725Missense_MutationnovelQ185H0.6
HNSCchrX154450428Missense_MutationnovelR339H0.29
HNSCchrX154449290Missense_MutationnovelE240Q0.26
LGGchrX154449722Frame_Shift_InsnovelI257Dfs*270.04
LGGchrX154450222Missense_MutationNAK305T0.05
LGGchrX154450087In_Frame_DelnovelE297del0.63
LUADchrX154450294Missense_MutationNAP329H0.11
LUADchrX154450289Silentrs782547697Y327Y0.08
LUADchrX154446495Missense_MutationnovelE126V0.67
LUADchrX154448481Splice_Regionnovel0.13
LUADchrX154450222Missense_MutationnovelK305M0.29
LUSCchrX154449735Missense_MutationnovelH260Q0.23
LUSCchrX154446487SilentnovelT123T0.08
LUSCchrX154449920Missense_MutationNAR273Q0.21
LUSCchrX154450088Nonsense_MutationNAE297*0.09
LUSCchrX154445866Missense_MutationNAR84L0.63
OVchrX154450045Missense_MutationnovelF282L0.12
OVchrX154449711SilentNAI252I0.27
SKCMchrX154450039SilentNAF280F0.46
SKCMchrX154448698SilentnovelE176E0.13
SKCMchrX154450267Missense_MutationnovelP320L0.77
SKCMchrX154450268Silentrs201052035P320P0.77
STADchrX154450275Missense_MutationNAR323C0.37
STADchrX154445866Missense_MutationNAR84Q0.29
UCECchrX1544506193'UTRrs7822405210.5
UCECchrX1544505363'UTRnovel0.38
UCECchrX154450063SilentnovelV288V0.37
UCECchrX154448721Missense_Mutationrs782391233R184Q0.33
UCECchrX154448913Missense_MutationnovelF203V0.45
UCECchrX154450229SilentnovelV307V0.38
UCECchrX1544504453'UTRrs117956160.45
UCECchrX154450257Missense_MutationNAH317Y0.22
UCECchrX154448944Missense_Mutationrs375558781R213Q0.24
UCECchrX1544505493'UTRrs7822396400.32
UCECchrX154449897Silentrs367764750Y265Y0.27
UCECchrX154450290Missense_MutationNAD328N0.44
UCECchrX154449912SilentnovelT270T0.4
UCECchrX1544504493'UTRrs7828082620.22
UCECchrX1544504833'UTRrs3767033040.48
UCECchrX154446511SilentNAG131G0.34
UCECchrX154448698Missense_MutationnovelE176D0.45
UCECchrX154450301Missense_MutationnovelK331N0.12
UCECchrX1544504833'UTRrs3767033040.35
UCECchrX154450064Missense_MutationNAR289W0.66
UCECchrX154448721Missense_Mutationrs782391233R184Q0.36
UCECchrX154445815Missense_MutationnovelL67P0.22
UCECchrX154449266Missense_MutationnovelE232K0.51
UCECchrX154450065Missense_MutationnovelR289Q0.46
UCECchrX154448703Missense_MutationnovelR178Q0.38
UCECchrX154450225Missense_MutationNAV306A0.29
UCECchrX154446451Missense_MutationnovelK111N0.11
UCECchrX154448562Splice_SitenovelX173_splice0.44
UCECchrX154449737Splice_SitenovelX260_splice0.36
UCECchrX154449717Missense_MutationNAE254D0.23
UCECchrX154445674Silentrs782340502A51A0.5
UCECchrX154448722Silentrs201408833R184R0.43
UCECchrX154449920Missense_MutationNAR273Q0.85
UCECchrX1544504923'UTRnovel0.57
UCECchrX154449235SilentnovelN221N0.26
UCECchrX154445865Missense_MutationnovelR84W0.34

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CESCAMP0.18983.2002e-05
DLBCAMP0.14580.24013
HNSCAMP0.20880.0095371
KIRCAMP0.04360.12739
LIHCAMP0.15410.011319
LUSCAMP0.17760.08275
OVAMP0.31092.176e-06
PAADAMP0.07610.041079
READAMP0.15150.14805
STADAMP0.11340.0021069
TGCTDEL0.06670.08422
THCADEL0.0040.21991
UCSDEL0.28570.063955

Survival Analysis
CancerP-value Q-value
KIRC0.00011

Kaplan-Meier Survival Analysis

MESO0.016

Kaplan-Meier Survival Analysis

ACC0.028

Kaplan-Meier Survival Analysis

ESCA0.0096

Kaplan-Meier Survival Analysis

COAD0.0008

Kaplan-Meier Survival Analysis

PAAD0.008

Kaplan-Meier Survival Analysis

CESC0.00026

Kaplan-Meier Survival Analysis

READ0.015

Kaplan-Meier Survival Analysis

LAML0.0012

Kaplan-Meier Survival Analysis

LIHC0.0001

Kaplan-Meier Survival Analysis

THCA0.03

Kaplan-Meier Survival Analysis

UVM0.00011

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000071859 (Gene tree)
Gene ID
9130
Gene Symbol
FAM50A
Alias
DXS9928E|XAP5|HXC-26|9F
Full Name
family with sequence similarity 50 member A
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
6,529 bases
Position
chrX:154,444,126-154,450,654
Accession
18786
RBP type
non-canonical RBP
Summary
This gene belongs to the FAM50 family. The encoded protein is highly conserved in length and sequence across different species. It is a basic protein containing a nuclear localization signal, and may function as a DNA-binding protein or a transcriptional factor. [provided by RefSeq, Sep 2009]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000481619FAM50A-205763--- (aa)--
ENST00000464419FAM50A-2031470--- (aa)--
ENST00000478509FAM50A-204682--- (aa)--
ENST00000494278FAM50A-207294--- (aa)--
ENST00000393600FAM50A-2021352-ENSP00000377225339 (aa)-Q14320
ENST00000490480FAM50A-206346--- (aa)--
ENST00000158526FAM50A-2011240-ENSP00000158526260 (aa)-B0S8I6
Gene Model
Click here to download ENSG00000071859's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000071859's network
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000071859FAM50A10061.408FBgn0039557CG122599861.408Drosophila_melanogaster
ENSG00000071859FAM50A10098.230ENSMUSG00000001962Fam50a10098.230Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22681889.HDAFunction
GO:0005634nucleus-IDAComponent
GO:0005634nucleus9339379.NASComponent
GO:0005654nucleoplasm-IDAComponent
GO:0007283spermatogenesis10534398.NASProcess
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