EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
23920402WD40 repeat-containing 62 overexpression as a novel indicator of poor prognosis for human gastric cancer.Eur J Cancer2013 NovZeng Sdoi: 10.1016/j.ejca.2013.07.015
28277612WDR62 overexpression is associated with a poor prognosis in patients with lung adenocarcinoma.Mol Carcinog2017 AugShinmura Kdoi: 10.1002/mc.22647

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr1936083154Missense_MutationnovelP488R0.52
ACCchr1936090521Splice_SitenovelX678_splice0.13
BLCAchr1936103400Missense_MutationnovelD1186G0.14
BLCAchr1936102781Missense_MutationNAE1084K0.22
BLCAchr1936103363Missense_MutationnovelA1174T0.19
BLCAchr1936094080Missense_MutationnovelG795R0.09
BLCAchr1936059971Missense_MutationnovelC91W0.12
BLCAchr1936083141Missense_MutationNAE484K0.08
BLCAchr1936081479Missense_MutationnovelS427F0.43
BLCAchr1936103075Splice_Siters369923535X1149_splice0.16
BLCAchr1936100751Missense_MutationNAE915K0.13
BLCAchr1936103879Missense_MutationnovelP1346S0.27
BLCAchr1936067364Missense_MutationnovelS207L0.45
BLCAchr1936067845SilentnovelP239P0.36
BLCAchr1936099517Missense_MutationNAQ880R0.42
BRCAchr1936089060Missense_MutationnovelI597M0.08
BRCAchr1936086805SilentNAK587K0.27
BRCAchr1936099556Missense_MutationNAS893N0.14
BRCAchr1936067342Missense_MutationnovelR200G0.13
BRCAchr1936094083Missense_MutationNAE796K0.17
BRCAchr1936067975Missense_MutationNAE283Q0.24
BRCAchr1936083181Missense_MutationNAV497G0.14
BRCAchr1936094092Missense_MutationNAE799K0.27
BRCAchr1936103364Missense_Mutationrs372642550A1174V0.2
BRCAchr1936086722Missense_MutationnovelL560V0.22
BRCAchr1936094081Missense_Mutationrs773240057G795E0.53
BRCAchr1936102824In_Frame_DelnovelL1099_L1102del0.16
CESCchr1936099471Missense_MutationnovelA865T0.28
CESCchr1936104661Missense_MutationNAD1428H0.18
CESCchr19360549625'Flanknovel0.19
CESCchr1936102748Splice_Regionrs3737818010.47
CESCchr1936073739Intronnovel0.14
CESCchr1936060105Intronnovel0.33
CESCchr1936089284Missense_MutationnovelA646S0.09
CESCchr1936084677Silentrs192491678D525D0.32
CESCchr1936103768Missense_MutationNAD1309N0.49
CESCchr1936102967Missense_MutationNAP1114S0.42
COADchr1936099439Missense_MutationNAA854V0.38
COADchr1936066301Missense_MutationnovelK145N0.11
COADchr1936055131Missense_MutationnovelE54K0.21
COADchr1936073419Missense_MutationnovelL374Q0.31
COADchr1936104586Missense_MutationNAP1403S0.29
COADchr1936101310Silentrs762321869P988P0.31
COADchr1936102762Silentrs749825052D1077D0.49
COADchr1936083077Silentrs776551919V462V0.3
COADchr1936083228Missense_MutationnovelS513R0.26
COADchr1936089280SilentNAA644A0.21
COADchr1936102018Silentrs141344823C1029C0.2
COADchr1936099478Missense_Mutationrs757558839R867Q0.32
COADchr1936092796Missense_Mutationrs762688861R773Q0.48
COADchr1936083178Missense_Mutationrs760351175R496Q0.5
COADchr1936103886Missense_Mutationrs753208163S1348F0.16
COADchr1936104891Missense_MutationNAA1474T0.32
COADchr1936091433SilentnovelD726D0.16
COADchr1936086740Missense_Mutationrs145392484V566M0.44
COADchr1936089091Missense_Mutationrs553327137R608C0.37
COADchr1936103162Missense_MutationNAA1152S0.32
COADchr1936073385Missense_Mutationrs779070171V363M0.33
ESCAchr1936083083Nonsense_MutationnovelY464*0.07
ESCAchr1936101262Silentrs781264395G972G0.13
ESCAchr1936071682Missense_MutationnovelL337V0.41
GBMchr1936099499Missense_MutationnovelK874M0.18
GBMchr1936083202Missense_MutationnovelG504V0.13
GBMchr1936084740Missense_MutationnovelE546D0.13
GBMchr1936089196SilentnovelG616G0.5
GBMchr1936094053Missense_MutationnovelP786T0.24
GBMchr1936071662Missense_MutationnovelN330S0.23
HNSCchr1936071657Silentrs200298843L328L0.11
HNSCchr1936081435Splice_RegionnovelV412V0.48
HNSCchr1936105001SilentnovelA1510A0.31
HNSCchr1936071613Missense_Mutationrs766074970D314N0.42
HNSCchr1936067419SilentnovelF225F0.15
HNSCchr1936081488Missense_MutationnovelT430I0.11
HNSCchr1936102781Missense_MutationNAE1084K0.11
HNSCchr1936103879Missense_MutationnovelP1346A0.13
HNSCchr1936092796Missense_Mutationrs762688861R773Q0.3
HNSCchr1936066342Missense_MutationnovelA159E0.5
HNSCchr1936083066SilentnovelL459L0.26
KICHchr1936067948Frame_Shift_InsnovelS275Tfs*200.47
KIRCchr1936083172Missense_MutationNAG494E0.4
KIRCchr1936060152Intronnovel0.15
KIRPchr1936091276Missense_Mutationrs750547223S704L0.16
LAMLchr1936067374SilentnovelS210S0.12
LGGchr1936099544In_Frame_InsnovelK890_P891dup0.39
LGGchr1936090494Nonsense_MutationnovelQ670Rfs*50.17
LGGchr1936081554Missense_MutationNAK452I0.19
LGGchr1936060045Intronnovel0.09
LGGchr1936103833Silentrs778940951S1330S0.41
LIHCchr1936091252Missense_MutationnovelS696N0.31
LIHCchr19360549415'Flanknovel0.35
LIHCchr1936101297Missense_MutationnovelK984M0.23
LIHCchr1936055025SilentnovelL18L0.66
LUADchr1936060047Intronnovel0.14
LUADchr1936073447SilentnovelI383I0.07
LUADchr1936066423Missense_MutationNAW186L0.9
LUADchr1936073496Missense_MutationnovelE400K0.16
LUADchr1936094095Missense_MutationnovelD800N0.16
LUADchr1936099479SilentnovelR867R0.43
LUADchr1936071685Missense_MutationNAG338W0.09
LUADchr1936071697Missense_MutationNAA342S0.7
LUADchr1936089101Missense_MutationNAQ611L0.21
LUADchr1936097032Missense_MutationNAR825C0.88
LUADchr1936089185Missense_MutationnovelG613C0.18
LUADchr1936086766Missense_MutationnovelQ574H0.2
LUADchr1936067826Splice_SiteNAX234_splice0.18
LUADchr1936060079Intronnovel0.56
LUSCchr1936104546SilentnovelP1389P0.22
LUSCchr1936060062Intronnovel0.19
LUSCchr1936055110Nonsense_MutationNAR47*0.39
LUSCchr1936103355Missense_MutationNAT1171M0.27
LUSCchr1936089060SilentnovelI597I0.22
LUSCchr1936066016Splice_SitenovelX130_splice0.65
LUSCchr1936060023Missense_MutationnovelT109S0.57
LUSCchr1936094142Frame_Shift_DelnovelK817Rfs*230.05
LUSCchr1936066255Splice_SiteNAX131_splice0.26
LUSCchr1936067916Missense_MutationNAG263A0.38
LUSCchr1936100841Missense_MutationnovelL945V0.42
LUSCchr1936058826Missense_MutationNAG75V0.21
MESOchr1936104932Silentrs746402119T1487T0.68
OVchr1936090480Missense_MutationnovelC665Y0.07
OVchr1936067366Missense_MutationnovelE208Q0.13
OVchr1936084657Frame_Shift_DelnovelE520Gfs*100.1
OVchr1936102079SilentnovelL1050L0.22
OVchr1936092782Nonsense_MutationnovelT768_N769ins*0.24
OVchr1936103024Missense_Mutationrs750117864G1133R0.56
OVchr1936058869Splice_RegionnovelA89A0.29
OVchr1936065957Splice_SitenovelX111_splice0.08
OVchr1936104671Missense_Mutationrs146018199R1431H0.5
OVchr1936071651SilentnovelH326H0.4
OVchr1936067315Missense_MutationnovelV191L0.04
OVchr1936091218Missense_MutationnovelG685S0.12
PAADchr1936081512Missense_MutationnovelR438L0.05
PAADchr1936099445Missense_MutationnovelR856H0.17
PCPGchr1936094121SilentnovelP808P0.09
PRADchr1936091276Missense_Mutationrs750547223S704L0.09
PRADchr1936103198Missense_Mutationrs771467789R1164C0.2
PRADchr1936103530Silentrs143638774L1229L0.31
READchr1936083226Missense_Mutationrs375417358R512Q0.26
READchr1936090510Missense_MutationNAS675F0.33
READchr1936084678Missense_Mutationrs147875659E526K0.35
SARCchr1936103551Silentrs775723707I1236I0.43
SKCMchr1936066381Missense_MutationNAS172F0.26
SKCMchr1936071682Missense_MutationNAL337F0.25
SKCMchr1936099494SilentnovelP872P0.44
SKCMchr1936099452SilentNAY858Y0.22
SKCMchr1936103526Missense_MutationnovelS1228F0.08
SKCMchr1936103527SilentnovelS1228S0.07
SKCMchr1936060101Intronnovel0.21
SKCMchr1936100789SilentNAF927F0.22
SKCMchr1936102077Missense_MutationNAS1049F0.32
SKCMchr1936090511SilentNAS675S0.46
SKCMchr1936103023Silentrs765013257G1132G0.44
SKCMchr1936103531Missense_Mutationrs771618020G1230S0.52
SKCMchr1936102108SilentNAF1059F0.27
SKCMchr1936091226SilentNAF687F0.33
SKCMchr1936092716Silentrs190314006P746P0.15
SKCMchr1936067867SilentNAL247L0.16
SKCMchr1936083127Missense_MutationNAP479L0.19
SKCMchr1936084657Missense_MutationNAH519Y0.44
SKCMchr1936100786SilentNAS926S0.37
SKCMchr1936084657Missense_MutationNAH519Y0.41
SKCMchr1936097032Missense_MutationNAR825C0.18
SKCMchr1936086715SilentnovelR557R0.25
SKCMchr1936081569Missense_MutationNAN457S0.38
SKCMchr1936091456Missense_MutationNAS734F0.1
SKCMchr1936104587Missense_Mutationrs768909004P1403L0.4
SKCMchr1936101308Missense_MutationNAP988S0.57
SKCMchr1936067839SilentNAT237T0.25
SKCMchr1936081439Missense_MutationNAP414S0.39
STADchr1936103586Missense_Mutationrs778175384S1248L0.32
STADchr1936104993Missense_MutationNAV1508L0.62
STADchr1936103382Missense_MutationNAS1180F0.17
STADchr1936066005Missense_MutationnovelV127A0.36
STADchr1936073516Silentrs766269117Y406Y0.33
STADchr1936102018Silentrs141344823C1029C0.12
STADchr1936103076Splice_SitenovelX1149_splice0.46
STADchr1936084746Splice_SiteNAX548_splice0.14
STADchr1936067315Missense_Mutationrs768099287V191I0.27
STADchr1936067436Missense_MutationNAE231G0.3
STADchr1936104928Missense_Mutationrs542711912P1486L0.31
STADchr1936089092Missense_Mutationrs774588484R608H0.45
STADchr1936099465Missense_Mutationrs764299399R863C0.15
STADchr1936103058Missense_MutationnovelS1144F0.35
STADchr1936092780Missense_Mutationrs532692601T768A0.13
STADchr1936067955Missense_MutationNAG276A0.22
STADchr1936091240Missense_MutationNAC692Y0.19
STADchr1936103552Missense_Mutationrs143493857V1237M0.13
STADchr1936066358SilentNAS164S0.21
STADchr1936103709Missense_Mutationrs773029330R1289Q0.19
STADchr1936092692Silentrs757339378C738C0.29
STADchr1936060216Intronnovel0.33
STADchr1936073421Missense_MutationNAS375T0.3
STADchr1936103973Missense_MutationnovelP1377L0.15
STADchr1936104844Missense_MutationnovelH1458R0.53
STADchr1936103173Missense_MutationNAK1155N0.41
STADchr1936104670Missense_Mutationrs756795208R1431C0.19
STADchr1936103825Nonsense_MutationnovelE1328*0.09
STADchr1936092795Missense_MutationNAR773W0.15
STADchr1936103862Missense_Mutationrs774129490R1340H0.24
TGCTchr1936091260Missense_MutationnovelV699M0.11
THCAchr1936067990Nonsense_MutationNAE288*0.14
THYMchr1936067435Missense_MutationnovelE231K0.26
UCECchr1936103552Missense_Mutationrs143493857V1237M0.38
UCECchr1936091453Missense_MutationnovelV733A0.12
UCECchr1936101715Missense_MutationnovelS1008F0.22
UCECchr1936103373Missense_MutationnovelV1177A0.34
UCECchr1936067926Silentrs777355565A266A0.34
UCECchr1936104670Missense_Mutationrs756795208R1431C0.38
UCECchr1936071555Splice_SitenovelX295_splice0.39
UCECchr1936101745Missense_MutationNAR1018Q0.56
UCECchr1936068012Splice_SitenovelX294_splice0.41
UCECchr1936099443SilentnovelK855K0.5
UCECchr1936104828Missense_MutationnovelT1453A0.32
UCECchr1936066278Missense_Mutationrs369843158R138C0.48
UCECchr1936103488SilentnovelA1215A0.36
UCECchr19361050793'UTRnovel0.33
UCECchr1936099552Missense_MutationNAE892K0.28
UCECchr1936067855Missense_MutationNAR243C0.24
UCECchr1936101306Missense_MutationNAS987N0.43
UCECchr1936103023Silentrs765013257G1132G0.11
UCECchr1936103451Missense_MutationnovelG1203D0.08
UCECchr1936067843Missense_MutationNAP239S0.23
UCECchr1936104607Missense_MutationNAS1410G0.44
UCECchr1936067967Missense_MutationnovelQ280R0.36
UCECchr1936083226Missense_Mutationrs375417358R512Q0.39
UCECchr1936099615Nonsense_MutationnovelE913*0.42
UCECchr1936103692Missense_MutationnovelW1283C0.35
UCECchr1936086784SilentnovelS580S0.24
UCECchr1936101309Missense_Mutationrs753553053P988L0.24
UCECchr1936104873Missense_MutationNAG1468R0.17
UCECchr1936101259SilentNAQ971Q0.18
UCECchr1936073476Missense_MutationnovelR393I0.35
UCECchr1936104520Missense_MutationnovelA1381T0.58
UCECchr1936073360Missense_MutationNAK354N0.22
UCECchr1936102747Splice_Regionrs1870297070.48
UCECchr1936054983SilentNAV4V0.36
UCECchr1936091405Missense_MutationnovelI717S0.09
UCECchr1936099500SilentNAK874K0.24
UCECchr1936091276Missense_Mutationrs750547223S704L0.3
UCECchr1936066332Missense_MutationnovelY156H0.33
UCECchr1936073386Missense_MutationnovelV363A0.35
UCECchr1936103074Splice_RegionnovelH1149H0.38
UCECchr1936066279Missense_Mutationrs199673795R138H0.48
UCECchr1936083170Silentrs150656878A493A0.4
UCECchr1936101770Missense_MutationnovelF1026L0.33
UCECchr1936090463Silentrs79238222N659N0.57
UCECchr1936081561SilentnovelI454I0.28
UCECchr1936104899SilentnovelA1476A0.31
UCECchr1936073432Nonsense_MutationnovelY378*0.45
UCECchr1936102113Missense_Mutationrs150778662R1061H0.5
UCECchr1936103024Missense_Mutationrs750117864G1133R0.35
UCECchr1936103356Silentrs762202259T1171T0.6
UCECchr1936094092Nonsense_MutationnovelE799*0.08
UCECchr1936058849Missense_MutationnovelG83C0.36
UCECchr1936101725Silentrs118175551P1011P0.33
UCECchr1936091280SilentNAG705G0.23
UCECchr1936094039Missense_Mutationrs372603166T781M0.42
UCECchr1936090520Splice_RegionnovelK678K0.52
UCECchr1936060166Intronnovel0.07
UCECchr1936060168Intronnovel0.05
UCECchr1936092806Frame_Shift_DelnovelR778Gfs*150.38
UCECchr1936055054Missense_MutationnovelR28L0.68
UCECchr1936055074Frame_Shift_DelnovelA37Pfs*400.5
UCECchr1936100772Missense_Mutationrs151119220R922C0.32
UCECchr1936104938Frame_Shift_DelnovelL1491Wfs*410.75
UCECchr1936092704Nonsense_MutationnovelW742*0.19
UCECchr1936102064Missense_Mutationrs563536911V1045I0.42
UCECchr1936103955Missense_MutationnovelT1371N0.18
UCECchr1936089083Missense_MutationnovelI605T0.5
UCECchr1936089085Missense_MutationNAY606H0.43
UCECchr1936073443Missense_MutationNAS382I0.24
UCECchr1936083074Missense_MutationNAK461N0.33
UCECchr1936089091Missense_Mutationrs553327137R608C0.35
UCECchr1936100817Missense_MutationnovelA937T0.36
UCECchr1936094071SilentnovelL792L0.39
UCECchr1936086769SilentnovelT575T0.48
UCECchr1936104581Missense_MutationnovelA1401V0.35
UCSchr1936083152SilentnovelT487T0.21
UCSchr1936100775Missense_Mutationrs141094124G923R0.16

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
READDEL0.03030.23023

Survival Analysis
CancerP-value Q-value
THYM0.0074

Kaplan-Meier Survival Analysis

KIRC0.00011

Kaplan-Meier Survival Analysis

STAD0.013

Kaplan-Meier Survival Analysis

MESO0.00014

Kaplan-Meier Survival Analysis

ACC0.00012

Kaplan-Meier Survival Analysis

HNSC0.016

Kaplan-Meier Survival Analysis

SKCM0.0001

Kaplan-Meier Survival Analysis

LUSC0.048

Kaplan-Meier Survival Analysis

KIRP0.0001

Kaplan-Meier Survival Analysis

CESC0.0048

Kaplan-Meier Survival Analysis

UCEC0.026

Kaplan-Meier Survival Analysis

LIHC0.0001

Kaplan-Meier Survival Analysis

DLBC0.0036

Kaplan-Meier Survival Analysis

LUAD0.0024

Kaplan-Meier Survival Analysis

UVM0.0093

Kaplan-Meier Survival Analysis

OV0.028

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000075702 (Gene tree)
Gene ID
284403
Gene Symbol
WDR62
Alias
DKFZP434J046|FLJ33298|C19orf14|MCPH2
Full Name
WD repeat domain 62
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
50,231 bases
Position
chr19:36,054,881-36,105,111
Accession
24502
RBP type
non-canonical RBP
Summary
This gene is proposed to play a role in cerebral cortical development. Mutations in this gene have been associated with microencephaly, cortical malformations, and cognitive disability. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2011]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000270301WDR62-2014632-ENSP000002703011518 (aa)-O43379
ENST00000608676WDR62-2072960--- (aa)--
ENST00000401500WDR62-2034682XM_005258809ENSP000003847921523 (aa)XP_005258866O43379
ENST00000378860WDR62-2021980--- (aa)--
ENST00000587391WDR62-2055971-ENSP00000465525483 (aa)-O43379
ENST00000644764WDR62-2081418-ENSP00000494253347 (aa)-A0A2R8YD43
ENST00000427823WDR62-204955-ENSP00000413475318 (aa)-H7C3R4
ENST00000589953WDR62-206664--- (aa)--
Gene Model
Click here to download ENSG00000075702's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000075702Hypertension1.7292077E-006-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000075702's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000922spindle pole21873635.IBAComponent
GO:0000922spindle pole20890278.20890279.IDAComponent
GO:0005515protein binding16189514.25416956.26297806.26496610.28089251.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus20729831.IDAComponent
GO:0005813centrosome26297806.IDAComponent
GO:0005814centriole-IEAComponent
GO:0005815microtubule organizing center-IDAComponent
GO:0005829cytosol-IDAComponent
GO:0007052mitotic spindle organization21873635.IBAProcess
GO:0007052mitotic spindle organization24388750.IMPProcess
GO:0007099centriole replication26297806.IMPProcess
GO:0021987cerebral cortex development20729831.IMPProcess
GO:0022008neurogenesis21873635.IBAProcess
GO:0022008neurogenesis20890278.IMPProcess
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