EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
26298725Overexpression of TRIP6 promotes tumor proliferation and reverses cell adhesion-mediated drug resistance (CAM-DR) via regulating nuclear p27(Kip1) expression in non-Hodgkin's lymphoma.Tumour Biol2016 JanMiao Xdoi: 10.1007/s13277-015-3939-4
19017743TRIP6, a novel molecular partner of the MAGI-1 scaffolding molecule, promotes invasiveness.FASEB J2009 MarChastre Edoi: 10.1096/fj.08-106344
29222344TRIP6 inhibits Hippo signaling in response to tension at adherens junctions.EMBO Rep2018 FebDutta Sdoi: 10.15252/embr.201744777

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr7100870716SilentnovelR324R0.28
BLCAchr7100870572Splice_SitenovelX277_splice0.05
BLCAchr7100871659SilentNAL372L0.44
BLCAchr7100870687Missense_Mutationrs546644102R315C0.13
BRCAchr7100870401Frame_Shift_DelNAL256Rfs*40.29
BRCAchr7100872721Missense_MutationNAH426Y0.12
BRCAchr7100870636Missense_Mutationrs750780514R298C0.03
BRCAchr7100873256Missense_Mutationrs748260838A462T0.28
CESCchr7100873194Missense_MutationNAS441F0.13
CESCchr7100868105Splice_Regionnovel0.28
COADchr7100868861Frame_Shift_DelNAQ245Rfs*40.35
COADchr7100870611SilentNAD289D0.46
COADchr7100868211Missense_Mutationrs371631775A114V0.39
COADchr7100870373Missense_MutationNAP247S0.22
COADchr7100871654Missense_Mutationrs139848707G371S0.13
COADchr7100871562Missense_MutationNAA340V0.27
COADchr7100868839Missense_Mutationrs565995134R236S0.28
COADchr7100870637Missense_Mutationrs778782117R298H0.27
COADchr7100868155Silentrs145233601A95A0.28
COADchr71008673745'UTRnovel0.81
COADchr7100868858Missense_MutationnovelG243R0.48
COADchr7100868124Frame_Shift_DelNAG87Afs*110.31
COADchr7100868212SilentNAA114A0.15
COADchr7100867945Missense_MutationNAG65V0.44
COADchr7100868124Frame_Shift_DelNAG87Afs*110.36
GBMchr7100873268Nonsense_MutationnovelQ466*0.07
GBMchr71008733923'UTRnovel0.09
GBMchr7100868529Missense_Mutationrs541670413T133M0.17
GBMchr71008733503'UTRnovel0.24
GBMchr71008733513'UTRnovel0.23
HNSCchr7100870584SilentnovelG280G0.26
HNSCchr7100868592Missense_MutationnovelP154L0.09
HNSCchr7100868620Silentrs745950801P163P0.24
KIRPchr7100868626Silentrs548658866G165G0.32
KIRPchr7100867891Frame_Shift_InsnovelL49Pfs*40.28
KIRPchr7100870621Missense_MutationnovelV293L0.28
LGGchr7100871639Missense_Mutationrs777418973V366M0.3
LGGchr7100868212SilentNAA114A0.33
LIHCchr7100868229Missense_MutationnovelR120P0.23
LUADchr7100870597Missense_MutationNAD285Y0.33
LUADchr7100868549Missense_MutationnovelP140T0.16
LUADchr7100868105Splice_Regionnovel0.47
LUADchr7100871545Splice_RegionNAA334A0.54
LUADchr7100873194Missense_MutationNAS441C0.09
LUADchr7100871651Missense_Mutationrs774097015R370C0.23
LUADchr7100868718Missense_MutationnovelP196Q0.15
LUADchr7100868582Missense_MutationnovelG151C0.26
LUADchr7100868636Missense_MutationNAP169T0.61
LUADchr7100872709Missense_MutationnovelD422Y0.22
LUSCchr7100870376SilentnovelL248L0.38
LUSCchr7100868526Missense_MutationnovelR132L0.14
LUSCchr7100873210Missense_MutationnovelQ446H0.33
OVchr7100870691Missense_MutationnovelG316D0.11
OVchr7100870579Missense_MutationnovelC279G0.06
OVchr7100867957In_Frame_InsnovelV69_G70insAERE0.09
OVchr7100871654Missense_Mutationrs139848707G371S0.19
OVchr7100871557SilentnovelK338K0.52
PAADchr7100868761Silentrs781538629G210G0.07
PAADchr7100867860Splice_SitenovelX37_splice0.17
PAADchr7100872741Silentrs746411837C432C0.03
PAADchr7100873257Missense_MutationnovelA462D0.16
READchr7100868674Silentrs765798443C181C0.13
READchr7100872694Nonsense_MutationNAR417*0.21
SARCchr7100873186SilentnovelL438L0.2
SARCchr7100870608SilentnovelG288G0.86
SKCMchr7100868750Missense_MutationNAE207K0.45
SKCMchr7100870630Missense_Mutationrs17855370L296F0.57
SKCMchr7100868864Nonsense_MutationNAQ245*0.13
SKCMchr7100870687Missense_Mutationrs546644102R315C0.37
SKCMchr7100870636Missense_Mutationrs750780514R298C0.92
STADchr7100871622Missense_MutationNAP360H0.22
STADchr7100872729SilentNAG428G0.19
STADchr7100870636Missense_Mutationrs750780514R298C0.31
STADchr7100870707SilentNAA321A0.24
STADchr7100871616Missense_MutationNAY358C0.12
STADchr7100868124Frame_Shift_DelNAG87Afs*110.32
STADchr7100871651Missense_Mutationrs774097015R370C0.13
STADchr7100872652Missense_Mutationrs201241149G403S0.19
STADchr7100868124Frame_Shift_DelNAG87Afs*110.21
STADchr7100871628Missense_MutationNAC362S0.21
STADchr7100870669Missense_MutationNAT309A0.05
TGCTchr7100868556Nonsense_MutationnovelS142*0.3
UCECchr7100870640Missense_MutationNAV299A0.16
UCECchr7100873184Missense_MutationnovelL438V0.35
UCECchr7100868175Missense_MutationNAS102I0.26
UCECchr7100870414SilentNAT260T0.33
UCECchr7100872713Missense_Mutationrs142590694R423Q0.27
UCECchr7100873270Missense_MutationnovelQ466H0.19
UCECchr7100873256Missense_Mutationrs748260838A462T0.53
UCECchr7100868719SilentnovelP196P0.44
UCECchr7100870745Splice_SitenovelX333_splice0.21
UCECchr7100868124Frame_Shift_DelNAG87Afs*110.38
UCECchr7100870637Missense_Mutationrs778782117R298H0.3
UCECchr7100870647Silentrs150669875H301H0.29
UCECchr7100873192SilentnovelS440S0.07
UCECchr7100870414SilentNAT260T0.33
UCECchr7100868194Frame_Shift_InsnovelR111Sfs*140.5
UCECchr7100870450Silentrs750194164S272S0.36
UCECchr7100872623Splice_SitenovelX393_splice0.4
UCECchr7100871560SilentnovelC339C0.24
UCECchr7100871680SilentnovelV379V0.3
UCECchr7100870453SilentNAG273G0.28
UCECchr7100870627Missense_MutationNAA295T0.33
UCECchr7100871660Missense_Mutationrs762238306D373N0.4

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCDEL0.05560.12261
DLBCAMP0.29170.13215
LGGAMP0.29241.5525e-07
LIHCDEL0.06220.24831
PAADDEL0.0380.049388
PRADAMP0.14230.012709
TGCTAMP0.62670.035574
THCADEL0.0020.27619

Survival Analysis
CancerP-value Q-value
KIRC0.034

Kaplan-Meier Survival Analysis

MESO0.032

Kaplan-Meier Survival Analysis

HNSC0.048

Kaplan-Meier Survival Analysis

LUSC0.015

Kaplan-Meier Survival Analysis

BRCA0.016

Kaplan-Meier Survival Analysis

ESCA0.022

Kaplan-Meier Survival Analysis

KIRP0.0032

Kaplan-Meier Survival Analysis

COAD0.0028

Kaplan-Meier Survival Analysis

PAAD0.029

Kaplan-Meier Survival Analysis

LAML0.0047

Kaplan-Meier Survival Analysis

UCEC0.037

Kaplan-Meier Survival Analysis

GBM0.042

Kaplan-Meier Survival Analysis

LIHC0.032

Kaplan-Meier Survival Analysis

CHOL0.021

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000087077 (Gene tree)
Gene ID
7205
Gene Symbol
TRIP6
Alias
ZRP-1|OIP1|MGC10556|MGC10558|MGC29959|MGC3837|MGC4423
Full Name
thyroid hormone receptor interactor 6
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
7,235 bases
Position
chr7:100,866,221-100,873,455
Accession
12311
RBP type
non-canonical RBP
Summary
This gene is a member of the zyxin family and encodes a protein with three LIM zinc-binding domains. This protein localizes to focal adhesion sites and along actin stress fibers. Recruitment of this protein to the plasma membrane occurs in a lysophosphatidic acid (LPA)-dependent manner and it regulates LPA-induced cell migration. Alternatively spliced variants which encode different protein isoforms have been described; however, not all variants have been fully characterized. [provided by RefSeq, Jul 2008]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000476870TRIP6-2061750--- (aa)--
ENST00000463125TRIP6-205835--- (aa)--
ENST00000417475TRIP6-202992-ENSP00000413817106 (aa)-Q15654
ENST00000619988TRIP6-2091303-ENSP0000047986580 (aa)-Q15654
ENST00000200457TRIP6-2011942-ENSP00000200457476 (aa)-Q15654
ENST00000488670TRIP6-207615--- (aa)--
ENST00000496260TRIP6-208451--- (aa)--
ENST00000429658TRIP6-203646-ENSP00000389194215 (aa)-H7BZE2
ENST00000437505TRIP6-204875-ENSP0000041073680 (aa)-Q15654
Gene Model
Click here to download ENSG00000087077's gene model file
Pathways
Pathway IDPathway NameSource
hsa04621NOD-like receptor signaling pathwayKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000087077Plasminogen Activator Inhibitor 12.1090000E-00624578379
ENSG00000087077Plasminogen Activator Inhibitor 12.6770000E-00924578379
ENSG00000087077Plasminogen Activator Inhibitor 13.6140000E-00924578379
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000087077's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000087077TRIP69140.609ENSG00000159840ZYX9146.835Homo_sapiens
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.HDAFunction
GO:0005149interleukin-1 receptor binding15657077.IDAFunction
GO:0005515protein binding10826496.11782456.14688263.15657077.16137684.16189514.16713569.16880273.19060904.21516116.23088713.25416956.25910212.26871637.IPIFunction
GO:0005634nucleus-IEAComponent
GO:0005829cytosol-IDAComponent
GO:0005856cytoskeleton-IEAComponent
GO:0005886plasma membrane-IDAComponent
GO:0005925focal adhesion21423176.HDAComponent
GO:0005925focal adhesion14688263.IDAComponent
GO:0019900kinase binding15657077.IPIFunction
GO:0030335positive regulation of cell migration14688263.IMPProcess
GO:0046872metal ion binding-IEAFunction
GO:0046966thyroid hormone receptor binding9598321.NASFunction
GO:0048041focal adhesion assembly14688263.NASProcess
GO:1901224positive regulation of NIK/NF-kappaB signaling15657077.IDAProcess
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