EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
22233809Convergent structural alterations define SWItch/Sucrose NonFermentable (SWI/SNF) chromatin remodeler as a central tumor suppressive complex in pancreatic cancer.Proc Natl Acad Sci U S A2012 Jan 31Shain AHdoi: 10.1073/pnas.1114817109
30098595LncRNA DLEU1 contributes to colorectal cancer progression via activation of KPNA3.Mol Cancer2018 Aug 11Liu Tdoi: 10.1186/s12943-018-0873-2.
25462860Frequent involvement of chromatin remodeler alterations in gastric field cancerization.Cancer Lett2015 Feb 1Takeshima Hdoi: 10.1016/j.canlet.2014.11.038

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchrX129515951Missense_MutationnovelL158M0.42
BLCAchrX1295234035'UTRnovel0.44
BLCAchrX129504804Splice_SiteNAX367_splice0.43
BLCAchrX129448393Frame_Shift_InsnovelN1027Kfs*50.97
BLCAchrX1295234115'UTRnovel0.23
BLCAchrX129515692Nonsense_MutationnovelE209*0.87ResIII
BLCAchrX129480784Nonsense_MutationNAQ787*0.57
BLCAchrX129488998Missense_MutationnovelS679C0.1
BLCAchrX129491926Splice_SitenovelX605_splice0.32
BLCAchrX129523268Nonsense_MutationNAQ35*0.64
BLCAchrX129492046Missense_MutationnovelF570L0.31
BLCAchrX129465909Missense_Mutationrs751134240Q918E0.22
BLCAchrX129506116SilentnovelL354L0.34
BRCAchrX129506207Nonsense_MutationnovelS324*0.21ResIII
BRCAchrX129523245Silentrs757422553A42A0.36
BRCAchrX129468806Missense_MutationNAG889C0.19
BRCAchrX129471227Missense_MutationNAE848Q0.23
BRCAchrX129497894Missense_MutationNAS485R0.32
BRCAchrX129480784Frame_Shift_DelNAQ787Rfs*250.59
BRCAchrX129498030Missense_MutationNAS440F0.31
BRCAchrX129504752Silentrs775723617L383L0.35
BRCAchrX129497965Missense_MutationNAH462D0.31
BRCAchrX129481121Missense_MutationnovelA761D0.05
BRCAchrX129507945Missense_MutationNAS321Y0.14ResIII
BRCAchrX129496804Missense_MutationnovelW524C0.03
BRCAchrX129518409Missense_MutationnovelK71N0.05
BRCAchrX129518391SilentnovelK77K0.08
BRCAchrX129516498Splice_SiteNAX88_splice0.35
BRCAchrX129515990Missense_MutationNAR145C0.16
BRCAchrX1294469313'UTRnovel0.26
CESCchrX1294472743'UTRnovel0.42
CESCchrX129465580Frame_Shift_DelnovelQ990Lfs*90.48
CESCchrX129481138SilentnovelA755A0.17
CESCchrX129448368Missense_MutationnovelA1036S0.39
CESCchrX129492084Nonsense_MutationnovelE558*0.41
CESCchrX129516373Missense_MutationNAR129Q0.27
CESCchrX1294466693'UTRnovel0.13
CESCchrX129488998Missense_MutationnovelS679C0.12
CESCchrX129448431Missense_MutationNAR1015C0.58
COADchrX129499824Missense_MutationnovelL395F0.14
COADchrX129487107Frame_Shift_DelNAM710Wfs*60.37
COADchrX129504774Frame_Shift_DelNAN376Ifs*160.37
COADchrX129497979Missense_Mutationrs781065601R457Q0.09
COADchrX129471266Missense_MutationnovelI835F0.1
COADchrX129490108Nonsense_MutationnovelE634*0.69
COADchrX129516373Missense_MutationNAR129Q0.65
COADchrX129465945Missense_MutationNAC906R0.16
COADchrX129511820Missense_Mutationrs755281078G265V0.17ResIII
COADchrX129523212SilentnovelG53G0.36
COADchrX129508015Frame_Shift_InsNAS298Ifs*140.76ResIII
COADchrX129481146Missense_MutationNAR753C0.29
COADchrX129471216Frame_Shift_DelnovelK851Nfs*330.67
COADchrX129465878Missense_MutationNAR928Q0.19
COADchrX129506195Missense_MutationNAR328H0.52ResIII
COADchrX129471234SilentNAE845E0.36
COADchrX129471277Missense_MutationnovelE831G0.13
COADchrX129515947Missense_MutationnovelS159F0.05
COADchrX129515933Frame_Shift_DelnovelT164Hfs*150.33
ESCAchrX1294470073'UTRnovel0.42
ESCAchrX129499829Missense_MutationnovelF394V0.3
GBMchrX129516432SilentnovelI109I0.22
GBMchrX129468884Nonsense_MutationNAR863*0.32
GBMchrX129465862Missense_MutationnovelK933N0.22
GBMchrX129490179Missense_MutationnovelR610H0.83
GBMchrX129523248SilentNAA41A0.34
GBMchrX129487063Missense_MutationNAQ724H0.28
HNSCchrX129465892Missense_MutationNAE923D0.6
HNSCchrX129468798SilentnovelS891S0.52
HNSCchrX129508089Missense_MutationnovelF273C0.19ResIII
HNSCchrX129481152Nonsense_MutationNAR751*0.19
HNSCchrX129506116SilentnovelL354L0.52
KIRCchrX129487088Missense_MutationNAR716I0.08
KIRCchrX129448438Nonsense_MutationnovelF1012Lfs*70.27
KIRPchrX129518429Nonsense_MutationNAQ65*0.91
KIRPchrX129480729Missense_MutationnovelL805P0.5
KIRPchrX129448357Missense_MutationnovelK1039N0.7
LAMLchrX129511949Missense_MutationnovelL222H0.11ResIII
LGGchrX129497980Missense_MutationnovelR457G0.13
LGGchrX129498049Missense_MutationNAD434H0.53
LGGchrX129496792Missense_MutationnovelE528D0.12
LGGchrX129499739Nonsense_MutationNAR424*0.24
LIHCchrX129508018Nonsense_MutationNAK297*0.4ResIII
LIHCchrX129511814Missense_MutationnovelK267R0.94ResIII
LIHCchrX129496850Missense_MutationnovelS509N0.8
LIHCchrX129489032Missense_MutationnovelM668V0.85
LUADchrX129499776Missense_MutationNAK411N0.37
LUADchrX129490176Missense_MutationNAI611S0.71
LUADchrX129518439SilentNAV61V0.6
LUADchrX129523265Missense_MutationNAE36K0.23
LUADchrX129480714Missense_MutationnovelT810I0.22
LUADchrX129515735Silentrs776556397L194L0.9
LUADchrX129516488Nonsense_Mutationrs763343505R91*0.82
LUADchrX129496868Nonsense_MutationnovelS503*0.24
LUADchrX129448353SilentnovelR1041R0.1
LUADchrX129465523SilentnovelA1009A0.07
LUADchrX129448436Missense_MutationnovelQ1013L0.21
LUADchrX129465855SilentnovelL936L0.06
LUADchrX129499755SilentnovelG418G0.33
LUADchrX129465561Nonsense_MutationNAQ997*0.08
LUADchrX129523295Missense_MutationNAD26Y0.2
LUADchrX129481117Nonsense_MutationnovelY762*0.18
LUADchrX129499842Splice_SiteNAX390_splice0.16
LUADchrX129518398Missense_MutationNAS75F0.23
LUADchrX129515954Missense_MutationnovelL157V0.3
LUADchrX129499760Frame_Shift_InsnovelL417Afs*40.14
LUADchrX129508054Missense_MutationnovelV285F0.13ResIII
LUADchrX129489078SilentnovelL652L0.09
LUADchrX129511842Missense_MutationnovelL258I0.1ResIII
LUADchrX129465897Nonsense_MutationnovelG922*0.12
LUADchrX129465714Missense_MutationnovelP946S0.88
LUADchrX129465899Missense_MutationnovelR921P0.3
LUADchrX129516492SilentNAA89A0.15
LUADchrX129465933Missense_MutationNAQ910K0.29
LUADchrX129506149SilentNAL343L0.26
LUADchrX129511954SilentnovelA220A0.07
LUSCchrX129515977Missense_MutationNAT149I0.6
LUSCchrX129496846Missense_MutationNAQ510H0.68
LUSCchrX129515910Missense_MutationNAF171L0.13
LUSCchrX129523262Nonsense_MutationnovelE37*0.18
LUSCchrX129523308SilentnovelI21I0.26
LUSCchrX129481151Missense_MutationnovelR751Q0.4
LUSCchrX129480759Missense_MutationnovelR795L0.31
LUSCchrX129465734Splice_SiteNAX940_splice0.86
LUSCchrX129465889SilentnovelA924A0.45
LUSCchrX129511975SilentNAG213G0.08
LUSCchrX129523268Missense_MutationNAQ35E0.31
OVchrX129511857Nonsense_MutationNAR253*0.42ResIII
OVchrX129468891Missense_MutationNAW860C0.25
OVchrX129490148Missense_MutationNAF620L0.41
PAADchrX129490081Missense_MutationnovelD643N0.24
PAADchrX129448365Nonsense_MutationNAE1037*0.24
PRADchrX129497851Frame_Shift_InsNAE500Rfs*290.61
PRADchrX129465519Splice_SiteNAX1010_splice0.27
PRADchrX129465572Missense_MutationNAR993P0.31
PRADchrX129497890Frame_Shift_DelnovelN484Kfs*70.06
PRADchrX129490123Missense_MutationnovelE629K0.81
PRADchrX129465841Splice_Regionnovel0.1
PRADchrX129490086Frame_Shift_InsnovelR641Kfs*140.7
PRADchrX129465612Missense_MutationnovelD980H0.4
PRADchrX129465721Nonsense_MutationNAY943*0.75
PRADchrX129504797Frame_Shift_DelnovelF368Lfs*240.52
READchrX129515709Missense_Mutationrs753408575N203S0.62ResIII
READchrX129481146Missense_MutationNAR753C0.29
READchrX129511909Missense_MutationNAH235Q0.12ResIII
READchrX129499754Missense_MutationnovelL419M0.17
READchrX129515980Missense_MutationNAR148H0.23
READchrX129480792Missense_MutationNAP784R0.37
READchrX129465900Missense_MutationNAR921C0.22
READchrX129511928Missense_MutationnovelR229Q0.82ResIII
READchrX129518445Missense_MutationNAK59N0.13
SARCchrX129448368Frame_Shift_DelNAR1035Sfs*90.18
SKCMchrX129490193Splice_SiteNAX606_splice0.63
SKCMchrX129498059Silentrs779824621I430I0.45
SKCMchrX129468884Nonsense_MutationNAR863*0.16
SKCMchrX129465647Missense_MutationnovelR968K0.08
SKCMchrX129515909Nonsense_MutationNAE172*0.92
SKCMchrX129490059Splice_SitenovelX650_splice0.65
SKCMchrX129523268Nonsense_MutationNAQ35*0.8
SKCMchrX129490189Nonsense_MutationNAR607*0.23
SKCMchrX129471248Missense_MutationnovelL841F0.07
SKCMchrX129448309Silentrs377501295*1055*0.19
SKCMchrX129448313Missense_MutationnovelS1054F0.24
SKCMchrX129496821Missense_MutationnovelE519K0.4
SKCMchrX129507952Missense_MutationNAE319K0.38ResIII
SKCMchrX129448398Missense_MutationNAE1026K0.12
SKCMchrX129490156Missense_MutationnovelR618S0.05
STADchrX129465888Missense_MutationNAR925G0.26
STADchrX129487119Missense_Mutationrs140388140R706C0.23
STADchrX129516377Missense_MutationnovelP128S0.47
STADchrX129465572Missense_MutationNAR993Q0.81
STADchrX129465887Missense_MutationNAR925K0.75
STADchrX129504752SilentnovelL383L0.28
STADchrX129465918Missense_MutationNAI915L0.4
STADchrX129487107Frame_Shift_DelNAM710Wfs*60.39
STADchrX129480759Missense_Mutationrs375431295R795H0.15
STADchrX129492069Missense_MutationnovelP563S0.28
STADchrX129488996Nonsense_MutationNAK680*0.86
STADchrX1295233825'UTRnovel0.29
STADchrX129481146Missense_MutationNAR753C0.32
STADchrX129471268Frame_Shift_DelnovelK834Rfs*500.21
TGCTchrX129492019SilentnovelL579L0.13
THCAchrX129515783SilentNAV178V0.19
UCECchrX129497891SilentNAG486G0.33
UCECchrX129465572Missense_MutationNAR993Q0.35
UCECchrX129498050Missense_MutationNAK433N0.28
UCECchrX129508021Nonsense_MutationNAE296*0.35ResIII
UCECchrX129516373Missense_MutationNAR129Q0.31
UCECchrX1294466023'UTRnovel0.3
UCECchrX1294469283'UTRnovel0.33
UCECchrX129516443Missense_MutationnovelA106T0.14
UCECchrX129499767Missense_MutationNAK414N0.43
UCECchrX1294467813'UTRnovel0.44
UCECchrX129465647Missense_MutationnovelR968K0.44
UCECchrX129468826Missense_MutationnovelN882S0.09
UCECchrX129480807Missense_MutationnovelR779Q0.37
UCECchrX129488943SilentnovelE697E0.42
UCECchrX129492052SilentnovelF568F0.49
UCECchrX129523222Missense_MutationNAT50M0.41
UCECchrX1294465563'UTRnovel0.53
UCECchrX129490166Missense_MutationnovelK614N0.05
UCECchrX129518367Missense_MutationnovelE85D0.04
UCECchrX129497849Frame_Shift_DelNAK499Nfs*120.37
UCECchrX129516473Nonsense_MutationnovelE96*0.46
UCECchrX129516374Frame_Shift_DelnovelR129Efs*20.45
UCECchrX129498006Missense_Mutationrs139253918R448Q0.39
UCECchrX129498007Nonsense_MutationnovelR448*0.1
UCECchrX129516478Missense_MutationnovelR94K0.09
UCECchrX129523327Missense_MutationnovelA15V0.26
UCECchrX129448363Missense_MutationnovelE1037D0.16
UCECchrX129515980Missense_MutationNAR148H0.04
UCECchrX129518445Missense_MutationNAK59N0.22
UCECchrX129468798SilentNAS891S0.21
UCECchrX129465683Missense_MutationNAT956N0.4
UCECchrX129471294SilentNAA825A0.43
UCECchrX129523369Translation_Start_SiteNAM1?0.53
UCECchrX129487129Frame_Shift_InsnovelE702Dfs*80.07
UCECchrX129506182Silentrs773298805S332S0.11
UCECchrX129499816Missense_MutationnovelR398H0.06
UCECchrX129523321Missense_MutationnovelA17V0.18
UCECchrX1294469573'UTRnovel0.33
UCECchrX129471212Missense_MutationNAL853V0.38
UCECchrX129497851Nonsense_MutationNAE500*0.47
UCECchrX129465606Nonsense_MutationnovelE982*0.09
UCECchrX129492021Missense_MutationnovelL579I0.46
UCECchrX129507945Missense_MutationNAS321Y0.19ResIII
UCECchrX129465572Missense_MutationNAR993Q0.27
UCECchrX129508007Missense_MutationnovelF300L0.35ResIII
UCECchrX1294469993'UTRnovel0.16
UCECchrX1294471373'UTRnovel0.21
UCECchrX129465566Missense_Mutationrs760708355A995V0.4
UCECchrX129471268Frame_Shift_DelnovelK834Rfs*500.28
UCECchrX129468786SilentNAV895V0.11
UCECchrX129468772Splice_SitenovelX900_splice0.36
UCECchrX1294472503'UTRnovel0.4
UCECchrX129497980Nonsense_MutationnovelR457*0.28
UCECchrX129515899Missense_MutationNAP175H0.37
UCECchrX1294468473'UTRnovel0.38
UCECchrX129471204Splice_RegionnovelQ855Q0.33
UCECchrX129496792Missense_MutationnovelE528D0.39
UCECchrX1294472483'UTRnovel0.48
UCECchrX129487041Missense_MutationNAE732K0.51
UCECchrX129499778Missense_MutationnovelK411Q0.51
UCECchrX129511856Missense_MutationnovelR253Q0.45ResIII
UCECchrX129506128Silentrs200169506L350L0.3
UCECchrX129465572Missense_MutationNAR993Q0.57
UCECchrX129465573Nonsense_MutationnovelR993*0.48
UCECchrX129465554Missense_MutationNAR999I0.26
UCECchrX129487088Missense_MutationNAR716I0.4
UCECchrX129515756Missense_MutationnovelQ187H0.05
UCECchrX129518384Missense_MutationnovelD80N0.04
UCECchrX129497851Frame_Shift_InsNAE500Rfs*290.46
UCECchrX129481146Missense_MutationNAR753C0.51
UCECchrX129490093Missense_MutationnovelK639Q0.2
UCECchrX129516368Missense_MutationnovelK131Q0.32
UCECchrX129468868Missense_MutationnovelF868S0.33
UCECchrX129468795SilentnovelP892P0.48
UCECchrX1294471853'UTRnovel0.16
UCECchrX129471216Missense_MutationnovelK851N0.16
UCECchrX129499797Missense_MutationnovelE404D0.08
UCECchrX129508034Missense_MutationnovelE291D0.22ResIII
UCECchrX129511822SilentnovelV264V0.23
UCECchrX129490156Missense_Mutationrs773042691R618C0.26
UCECchrX129448402Missense_MutationnovelE1024D0.34
UCECchrX129488963Missense_Mutationrs762935061T691A0.42
UCECchrX1294467213'UTRnovel0.29
UCECchrX129471217Missense_MutationnovelK851I0.4
UCECchrX129490188Missense_MutationnovelR607Q0.44
UCECchrX129498065SilentnovelT428T0.25
UCECchrX129504774Missense_MutationnovelN376I0.4
UCECchrX129515788Splice_SitenovelX177_splice0.38
UCECchrX129516491Missense_MutationnovelD90N0.31
UCECchrX129523221Silentrs771226753T50T0.32
UCECchrX129487106Frame_Shift_InsnovelM710Nfs*100.18
UCECchrX129471268Frame_Shift_DelnovelK834Rfs*500.46
UCECchrX129490175SilentnovelI611I0.17
UCECchrX129448368Missense_MutationnovelA1036S0.44
UCECchrX129487118Missense_Mutationrs756947225R706H0.47
UCECchrX129516412Missense_MutationnovelS116Y0.33
UCECchrX129516373Missense_MutationNAR129Q0.57
UCECchrX1294466133'UTRnovel0.13
UCECchrX1294471273'UTRnovel0.15
UCECchrX129496838Missense_MutationnovelR513H0.45
UCECchrX129465863Frame_Shift_InsnovelK933Tfs*440.08
UCECchrX129506141Frame_Shift_DelnovelN346Tfs*460.26
UCECchrX129465675Nonsense_MutationNAG959*0.15
UCECchrX129490156Missense_Mutationrs773042691R618C0.21
UCECchrX129511946Missense_MutationNAG223D0.12ResIII
UCECchrX129523293SilentNAD26D0.38
UCECchrX129507985Missense_MutationnovelL308M0.33ResIII
UCECchrX129471300SilentnovelN823N0.34
UCECchrX129487088Missense_MutationNAR716I0.38
UCECchrX129448430Missense_MutationNAR1015H0.33
UCECchrX129468817Missense_MutationNAR885Q0.41
UCECchrX1294469453'UTRnovel0.78
UCECchrX129504792Missense_MutationNAS370Y0.32
UCECchrX129515955SilentNAE156E0.35
UCECchrX1294467573'UTRnovel0.33
UCECchrX1294470023'UTRnovel0.37
UCECchrX129468863Missense_MutationnovelK870Q0.03
UCECchrX129471212Missense_MutationnovelL853F0.22
UCECchrX129515963Missense_MutationNAD154Y0.25
UCECchrX129516416Missense_MutationnovelK115E0.39
UCECchrX129490135Missense_MutationnovelD625N0.49
UCECchrX1294471333'UTRnovel0.38
UCECchrX129465559SilentnovelQ997Q0.25
UCECchrX129471293Missense_MutationnovelL826M0.41
UCECchrX129487036Missense_MutationnovelD733E0.34
UCECchrX129488950Missense_MutationnovelR695I0.34
UCECchrX129496784Missense_MutationnovelR531Q0.46
UCECchrX129489079Missense_MutationnovelL652R0.41
UCSchrX129465845Missense_MutationnovelK939T0.12
UCSchrX129523293SilentNAD26D0.14

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
DLBCAMP0.08330.24013
KIRCAMP0.02840.12739
TGCTDEL0.07330.08422
THCADEL00.21991
UCSDEL0.32140.063955

Survival Analysis
CancerP-value Q-value
KIRC0.00024

Kaplan-Meier Survival Analysis

STAD0.00031

Kaplan-Meier Survival Analysis

SARC0.033

Kaplan-Meier Survival Analysis

PAAD0.0083

Kaplan-Meier Survival Analysis

PCPG0.012

Kaplan-Meier Survival Analysis

BLCA0.038

Kaplan-Meier Survival Analysis

CESC0.0016

Kaplan-Meier Survival Analysis

LGG0.0006

Kaplan-Meier Survival Analysis

LUAD0.029

Kaplan-Meier Survival Analysis

Drugs

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Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000102038 (Gene tree)
Gene ID
6594
Gene Symbol
SMARCA1
Alias
SNF2LB|NURF140|ISWI|SWI|hSNF2L|SNF2L1|SNF2L
Full Name
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
77,013 bases
Position
chrX:129,446,501-129,523,513
Accession
11097
RBP type
canonical RBP
Summary
This gene encodes a member of the SWI/SNF family of proteins. The encoded protein is an ATPase which is expressed in diverse tissues and contributes to the chromatin remodeling complex that is involved in transcription. The protein may also play a role in DNA damage, growth inhibition and apoptosis of cancer cells. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000360162ResIIIPF04851.152.1e-1111
ENSP00000360164ResIIIPF04851.152.1e-1111
ENSP00000360163ResIIIPF04851.152.1e-1111
ENSP00000360163DEADPF00270.293.8e-0611
ENSP00000360164DEADPF00270.293.8e-0611
ENSP00000360162DEADPF00270.293.9e-0611
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000478420SMARCA1-204561--- (aa)--
ENST00000371121SMARCA1-2013564-ENSP000003601621070 (aa)-B7ZLQ5
ENST00000617310SMARCA1-2054291--- (aa)--
ENST00000371123SMARCA1-2033948XM_017029751ENSP000003601641058 (aa)XP_016885240A0A0A0MRP6
ENST00000371122SMARCA1-2024099XM_005262461ENSP000003601631054 (aa)XP_005262518P28370
Gene Model
Click here to download ENSG00000102038's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000102038's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000102038SMARCA19283.709ENSAPOG00000016035smarca59884.026Acanthochromis_polyacanthus
ENSG00000102038SMARCA110097.009ENSAMEG00000015218SMARCA110097.009Ailuropoda_melanoleuca
ENSG00000102038SMARCA18584.053ENSACIG00000016982smarca59984.152Amphilophus_citrinellus
ENSG00000102038SMARCA19283.709ENSAOCG00000015578smarca59582.762Amphiprion_ocellaris
ENSG00000102038SMARCA19283.709ENSAPEG00000011117smarca59984.080Amphiprion_percula
ENSG00000102038SMARCA19779.550ENSATEG00000012894smarca59483.714Anabas_testudineus
ENSG00000102038SMARCA19393.279ENSAPLG00000013149SMARCA110093.279Anas_platyrhynchos
ENSG00000102038SMARCA19789.612ENSACAG00000011376SMARCA19591.491Anolis_carolinensis
ENSG00000102038SMARCA110094.802ENSANAG00000023098SMARCA110094.802Aotus_nancymaae
ENSG00000102038SMARCA19681.158ENSACLG00000025356smarca59583.165Astatotilapia_calliptera
ENSG00000102038SMARCA18888.495ENSAMXG00000011227smarca19990.182Astyanax_mexicanus
ENSG00000102038SMARCA19880.754ENSAMXG00000005709smarca59484.000Astyanax_mexicanus
ENSG00000102038SMARCA19997.450ENSBTAG00000002292SMARCA110097.431Bos_taurus
ENSG00000102038SMARCA19363.673WBGene00002169isw-19763.673Caenorhabditis_elegans
ENSG00000102038SMARCA110099.716ENSCJAG00000002868SMARCA110099.716Callithrix_jacchus
ENSG00000102038SMARCA110088.941ENSCAFG00000018673SMARCA19988.824Canis_familiaris
ENSG00000102038SMARCA110098.677ENSCAFG00020001751SMARCA110098.677Canis_lupus_dingo
ENSG00000102038SMARCA110097.549ENSCHIG00000009837SMARCA110097.549Capra_hircus
ENSG00000102038SMARCA19598.900ENSTSYG00000004240SMARCA19898.269Carlito_syrichta
ENSG00000102038SMARCA110096.015ENSCPOG00000013601SMARCA110096.015Cavia_porcellus
ENSG00000102038SMARCA110096.786ENSCCAG00000030817SMARCA110096.786Cebus_capucinus
ENSG00000102038SMARCA1100100.000ENSCATG00000015921SMARCA1100100.000Cercocebus_atys
ENSG00000102038SMARCA110097.070ENSCLAG00000002171SMARCA110097.070Chinchilla_lanigera
ENSG00000102038SMARCA110099.905ENSCSAG00000008460SMARCA110099.905Chlorocebus_sabaeus
ENSG00000102038SMARCA19592.707ENSCPBG00000001146SMARCA19492.793Chrysemys_picta_bellii
ENSG00000102038SMARCA19273.797ENSCING00000004110swi/snf9773.797Ciona_intestinalis
ENSG00000102038SMARCA19273.069ENSCSAVG00000004620-10074.165Ciona_savignyi
ENSG00000102038SMARCA110099.907ENSCANG00000007183SMARCA110099.907Colobus_angolensis_palliatus
ENSG00000102038SMARCA110095.940ENSCGRG00001010776Smarca19896.343Cricetulus_griseus_chok1gshd
ENSG00000102038SMARCA19595.908ENSCGRG00000015301Smarca19896.382Cricetulus_griseus_crigri
ENSG00000102038SMARCA19283.709ENSCSEG00000000328smarca59583.114Cynoglossus_semilaevis
ENSG00000102038SMARCA19383.096ENSCVAG00000008668smarca59983.628Cyprinodon_variegatus
ENSG00000102038SMARCA19385.375ENSDARG00000012776smarca19785.375Danio_rerio
ENSG00000102038SMARCA19382.727ENSDARG00000052348smarca59582.727Danio_rerio
ENSG00000102038SMARCA19896.232ENSDNOG00000004315SMARCA19996.232Dasypus_novemcinctus
ENSG00000102038SMARCA110095.351ENSDORG00000009270Smarca19996.425Dipodomys_ordii
ENSG00000102038SMARCA19372.194FBgn0011604Iswi9872.305Drosophila_melanogaster
ENSG00000102038SMARCA17993.750ENSETEG00000017426SMARCA18693.750Echinops_telfairi
ENSG00000102038SMARCA19380.899ENSEBUG00000001239smarca59680.899Eptatretus_burgeri
ENSG00000102038SMARCA19792.692ENSEASG00005008218SMARCA110093.333Equus_asinus_asinus
ENSG00000102038SMARCA110098.021ENSECAG00000012106SMARCA110098.021Equus_caballus
ENSG00000102038SMARCA17797.682ENSEEUG00000014927SMARCA18497.682Erinaceus_europaeus
ENSG00000102038SMARCA19486.540ENSELUG00000010515smarca19886.927Esox_lucius
ENSG00000102038SMARCA110098.677ENSFCAG00000018496SMARCA110098.677Felis_catus
ENSG00000102038SMARCA18892.324ENSFALG00000000209SMARCA19893.640Ficedula_albicollis
ENSG00000102038SMARCA19597.996ENSFDAG00000009818SMARCA19897.996Fukomys_damarensis
ENSG00000102038SMARCA19979.103ENSFHEG00000007687smarca59482.828Fundulus_heteroclitus
ENSG00000102038SMARCA19491.037ENSGALG00000008431SMARCA19693.018Gallus_gallus
ENSG00000102038SMARCA19383.503ENSGAFG00000017731smarca59582.828Gambusia_affinis
ENSG00000102038SMARCA19293.519ENSGAGG00000023575SMARCA110093.519Gopherus_agassizii
ENSG00000102038SMARCA17696.000ENSGGOG00000012841-9896.000Gorilla_gorilla
ENSG00000102038SMARCA110097.070ENSHGLG00000003080SMARCA110097.070Heterocephalus_glaber_female
ENSG00000102038SMARCA19497.160ENSHGLG00100001102SMARCA110096.803Heterocephalus_glaber_male
ENSG00000102038SMARCA19283.538ENSHCOG00000005458smarca59582.727Hippocampus_comes
ENSG00000102038SMARCA19585.149ENSIPUG00000016905Smarca19986.925Ictalurus_punctatus
ENSG00000102038SMARCA19780.607ENSIPUG00000005229SMARCA59782.657Ictalurus_punctatus
ENSG00000102038SMARCA110098.299ENSSTOG00000014524SMARCA110098.299Ictidomys_tridecemlineatus
ENSG00000102038SMARCA110096.143ENSJJAG00000002593Smarca110096.143Jaculus_jaculus
ENSG00000102038SMARCA19283.742ENSKMAG00000003777smarca59582.929Kryptolebias_marmoratus
ENSG00000102038SMARCA19481.637ENSLBEG00000018112smarca59582.626Labrus_bergylta
ENSG00000102038SMARCA18883.888ENSLBEG00000013295SMARCA110084.829Labrus_bergylta
ENSG00000102038SMARCA19689.250ENSLACG00000016697SMARCA19890.190Latimeria_chalumnae
ENSG00000102038SMARCA19488.855ENSLOCG00000014591smarca19788.855Lepisosteus_oculatus
ENSG00000102038SMARCA19596.720ENSLAFG00000000896SMARCA110096.720Loxodonta_africana
ENSG00000102038SMARCA1100100.000ENSMFAG00000002117SMARCA1100100.000Macaca_fascicularis
ENSG00000102038SMARCA1100100.000ENSMMUG00000008818SMARCA1100100.000Macaca_mulatta
ENSG00000102038SMARCA1100100.000ENSMNEG00000041768SMARCA1100100.000Macaca_nemestrina
ENSG00000102038SMARCA110099.907ENSMLEG00000043198SMARCA110099.907Mandrillus_leucophaeus
ENSG00000102038SMARCA19383.707ENSMAMG00000014294smarca59682.583Mastacembelus_armatus
ENSG00000102038SMARCA19681.158ENSMZEG00005009369smarca59583.165Maylandia_zebra
ENSG00000102038SMARCA19591.330ENSMGAG00000007042SMARCA19991.494Meleagris_gallopavo
ENSG00000102038SMARCA110096.300ENSMAUG00000008133Smarca110096.300Mesocricetus_auratus
ENSG00000102038SMARCA110098.299ENSMICG00000015768SMARCA110098.299Microcebus_murinus
ENSG00000102038SMARCA110096.110ENSMOCG00000009464Smarca110096.110Microtus_ochrogaster
ENSG00000102038SMARCA19381.231ENSMMOG00000005547smarca59981.231Mola_mola
ENSG00000102038SMARCA19889.555ENSMODG00000013187-9989.545Monodelphis_domestica
ENSG00000102038SMARCA19283.333ENSMALG00000002081smarca59782.922Monopterus_albus
ENSG00000102038SMARCA110095.861MGP_CAROLIEiJ_G0033034Smarca110095.861Mus_caroli
ENSG00000102038SMARCA110095.861ENSMUSG00000031099Smarca110095.861Mus_musculus
ENSG00000102038SMARCA110095.955MGP_PahariEiJ_G0031579Smarca110095.955Mus_pahari
ENSG00000102038SMARCA110095.955MGP_SPRETEiJ_G0034192Smarca110095.955Mus_spretus
ENSG00000102038SMARCA110098.224ENSMPUG00000017423SMARCA19598.224Mustela_putorius_furo
ENSG00000102038SMARCA110094.590ENSMLUG00000029614SMARCA110094.030Myotis_lucifugus
ENSG00000102038SMARCA110097.059ENSNGAG00000006492Smarca110097.059Nannospalax_galili
ENSG00000102038SMARCA19383.809ENSNBRG00000004463smarca59983.131Neolamprologus_brichardi
ENSG00000102038SMARCA110099.159ENSNLEG00000015179SMARCA110099.159Nomascus_leucogenys
ENSG00000102038SMARCA19082.038ENSMEUG00000008819SMARCA19982.019Notamacropus_eugenii
ENSG00000102038SMARCA110096.490ENSODEG00000012163SMARCA110096.490Octodon_degus
ENSG00000102038SMARCA19681.256ENSONIG00000009993smarca59583.266Oreochromis_niloticus
ENSG00000102038SMARCA19293.827ENSOANG00000002862SMARCA110093.827Ornithorhynchus_anatinus
ENSG00000102038SMARCA110096.692ENSOCUG00000001047SMARCA110096.692Oryctolagus_cuniculus
ENSG00000102038SMARCA19283.640ENSORLG00000021998smarca59582.828Oryzias_latipes
ENSG00000102038SMARCA19283.742ENSORLG00020017679smarca59582.929Oryzias_latipes_hni
ENSG00000102038SMARCA19283.640ENSORLG00015017210smarca59582.727Oryzias_latipes_hsok
ENSG00000102038SMARCA19283.640ENSOMEG00000000086smarca59582.727Oryzias_melastigma
ENSG00000102038SMARCA110098.387ENSOGAG00000004399SMARCA110098.387Otolemur_garnettii
ENSG00000102038SMARCA19597.335ENSOARG00000014638SMARCA110098.878Ovis_aries
ENSG00000102038SMARCA1100100.000ENSPPAG00000034647SMARCA1100100.000Pan_paniscus
ENSG00000102038SMARCA110098.677ENSPPRG00000008929SMARCA110098.677Panthera_pardus
ENSG00000102038SMARCA19597.151ENSPTIG00000000915SMARCA19897.151Panthera_tigris_altaica
ENSG00000102038SMARCA1100100.000ENSPTRG00000049876SMARCA1100100.000Pan_troglodytes
ENSG00000102038SMARCA1100100.000ENSPANG00000003871SMARCA1100100.000Papio_anubis
ENSG00000102038SMARCA19385.816ENSPKIG00000013411smarca19887.124Paramormyrops_kingsleyae
ENSG00000102038SMARCA19591.807ENSPSIG00000010101SMARCA110093.210Pelodiscus_sinensis
ENSG00000102038SMARCA110096.964ENSPEMG00000017503Smarca110096.964Peromyscus_maniculatus_bairdii
ENSG00000102038SMARCA19592.108ENSPCIG00000015460SMARCA19892.192Phascolarctos_cinereus
ENSG00000102038SMARCA19283.742ENSPFOG00000007649smarca59582.828Poecilia_formosa
ENSG00000102038SMARCA19283.742ENSPLAG00000003363smarca59582.828Poecilia_latipinna
ENSG00000102038SMARCA19283.640ENSPMEG00000019849smarca59582.727Poecilia_mexicana
ENSG00000102038SMARCA19283.640ENSPREG00000023250smarca59582.727Poecilia_reticulata
ENSG00000102038SMARCA110097.259ENSPPYG00000020703SMARCA110097.259Pongo_abelii
ENSG00000102038SMARCA17890.909ENSPCOG00000020722SMARCA19493.539Propithecus_coquereli
ENSG00000102038SMARCA19497.194ENSPVAG00000003805SMARCA19497.297Pteropus_vampyrus
ENSG00000102038SMARCA15684.384ENSPNYG00000012299smarca59282.933Pundamilia_nyererei
ENSG00000102038SMARCA110096.408ENSRNOG00000003762Smarca110096.408Rattus_norvegicus
ENSG00000102038SMARCA110099.907ENSRROG00000034167SMARCA110099.907Rhinopithecus_roxellana
ENSG00000102038SMARCA19698.258ENSSBOG00000020641SMARCA110099.796Saimiri_boliviensis_boliviensis
ENSG00000102038SMARCA19286.742ENSSHAG00000013518SMARCA19986.742Sarcophilus_harrisii
ENSG00000102038SMARCA19885.314ENSSFOG00015009043smarca19887.675Scleropages_formosus
ENSG00000102038SMARCA19582.154ENSSFOG00015016794smarca510083.814Scleropages_formosus
ENSG00000102038SMARCA19382.371ENSSMAG00000004801smarca59582.371Scophthalmus_maximus
ENSG00000102038SMARCA19383.198ENSSDUG00000020690smarca59682.525Seriola_dumerili
ENSG00000102038SMARCA19383.198ENSSLDG00000025190smarca59682.525Seriola_lalandi_dorsalis
ENSG00000102038SMARCA18790.399ENSSARG00000000842SMARCA19290.399Sorex_araneus
ENSG00000102038SMARCA19590.572ENSSPUG00000000590SMARCA19492.103Sphenodon_punctatus
ENSG00000102038SMARCA19383.299ENSSPAG00000002894smarca59784.026Stegastes_partitus
ENSG00000102038SMARCA19897.784ENSSSCG00000012649SMARCA19997.784Sus_scrofa
ENSG00000102038SMARCA19392.770ENSTGUG00000003899-10092.770Taeniopygia_guttata
ENSG00000102038SMARCA19383.401ENSTRUG00000014094smarca59582.727Takifugu_rubripes
ENSG00000102038SMARCA19282.582ENSTNIG00000017717smarca59481.616Tetraodon_nigroviridis
ENSG00000102038SMARCA19491.365ENSTBEG00000014973SMARCA110091.365Tupaia_belangeri
ENSG00000102038SMARCA19495.354ENSTTRG00000006168SMARCA110095.354Tursiops_truncatus
ENSG00000102038SMARCA110098.110ENSUAMG00000020201SMARCA110098.110Ursus_americanus
ENSG00000102038SMARCA19594.071ENSUMAG00000004073SMARCA19798.783Ursus_maritimus
ENSG00000102038SMARCA17999.683ENSVPAG00000010492-8699.683Vicugna_pacos
ENSG00000102038SMARCA19599.000ENSVVUG00000008878SMARCA19999.060Vulpes_vulpes
ENSG00000102038SMARCA19489.347ENSXETG00000001526smarca19989.347Xenopus_tropicalis
ENSG00000102038SMARCA19383.401ENSXCOG00000011170smarca59882.727Xiphophorus_couchianus
ENSG00000102038SMARCA19383.401ENSXMAG00000009678smarca59784.978Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000733DNA strand renaturation-IEAProcess
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific-ISAFunction
GO:0003677DNA binding-IEAFunction
GO:0004386helicase activity-IEAFunction
GO:0005515protein binding14609955.15640247.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus14609955.IDAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0006338chromatin remodeling14609955.IDAProcess
GO:0007420brain development14609955.IMPProcess
GO:0008094DNA-dependent ATPase activity14609955.IDAFunction
GO:0008134transcription factor binding27141965.IPIFunction
GO:0016589NURF complex20850016.IDAComponent
GO:0030182neuron differentiation-ISSProcess
GO:0031491nucleosome binding-IEAFunction
GO:0036310annealing helicase activity22705370.IDAFunction
GO:0043044ATP-dependent chromatin remodeling15640247.IDAProcess
GO:0043231intracellular membrane-bounded organelle-IDAComponent
GO:0045893positive regulation of transcription, DNA-templated14609955.IMPProcess
GO:0045944positive regulation of transcription by RNA polymerase II14609955.IMPProcess
GO:0070615nucleosome-dependent ATPase activity15640247.IDAFunction
GO:0090537CERF complex15640247.IDAComponent
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