EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1619714330Missense_MutationnovelE236Q0.15
BLCAchr1619711401Missense_MutationnovelG320S0.35
BLCAchr1619714789Missense_Mutationrs746730360E83Q0.32
BLCAchr16197068613'UTRnovel0.15
BLCAchr1619714150Missense_MutationnovelE296K0.15
BLCAchr1619714764Missense_MutationNAR91T0.16
BLCAchr1619714482Nonsense_MutationnovelS185*0.2
BLCAchr1619714483Frame_Shift_InsnovelS185Pfs*350.1
BRCAchr1619714229SilentnovelK269K0.3
BRCAchr1619714147Missense_MutationnovelS297C0.06
CESCchr1619714510Nonsense_MutationNAE176*0.38
CESCchr1619710551Silentrs201711821R341R0.2
COADchr1619707000SilentnovelS429S0.31
COADchr1619714384Frame_Shift_DelnovelK217Nfs*230.17
COADchr1619714568Frame_Shift_InsNAA158Gfs*160.3
COADchr1619714569Frame_Shift_DelNAK156Rfs*570.32
COADchr16197068313'UTRNA0.24
COADchr1619706972Missense_Mutationrs374832937A439T0.06
COADchr16197181975'UTRnovel0.64
COADchr1619710510Missense_Mutationrs757928834T355M0.31
COADchr1619714384Frame_Shift_DelnovelK217Nfs*230.21
COADchr16197068313'UTRNA0.74
COADchr1619714193Silentrs750255844I281I0.11
COADchr16197068313'UTRNA0.42
COADchr1619707168Frame_Shift_DelnovelK373Nfs*20.13
COADchr1619714143Missense_MutationNAG298V0.24
COADchr1619714251Missense_MutationNAP262H0.36
COADchr1619707050Nonsense_MutationNAQ413*0.37
ESCAchr1619707008Nonsense_MutationnovelK427*0.31
GBMchr1619714902Missense_MutationnovelR45I0.09
GBMchr1619706972Missense_Mutationrs374832937A439T0.72
GBMchr1619710553Missense_Mutationrs760920808R341C0.49
GBMchr1619707075SilentnovelL404L0.25
GBMchr1619714856Missense_MutationnovelE60D0.08
HNSCchr1619707156SilentnovelL377L0.29
KIRPchr1619714811Missense_MutationnovelS75R0.22
LAMLchr1619714568Frame_Shift_InsNAA158Gfs*160.2
LGGchr1619706940Silentrs377055424N449N0.34
LGGchr1619714252Missense_Mutationrs764897724P262T0.08
LGGchr1619714319SilentnovelP239P0.07
LGGchr1619714798Nonsense_MutationNAE80*0.21
LIHCchr16197182035'UTRnovel0.17
LUADchr1619714590Missense_MutationnovelK149R0.29
LUADchr1619714321Missense_MutationnovelP239T0.17
LUADchr1619710565Missense_MutationnovelE337K0.22
LUADchr16197181985'UTRnovel0.6
LUADchr1619714211Silentrs749451619K275K0.38
LUSCchr1619714497Missense_MutationnovelV180A0.25
LUSCchr1619711397Missense_MutationNAN321I0.12
LUSCchr1619714704Missense_MutationnovelS111I0.22
LUSCchr1619714124Nonsense_MutationnovelW304*0.08
OVchr16197068223'UTRnovel0.13
OVchr1619706982SilentnovelG435G0.1
SARCchr1619711402Frame_Shift_Delrs759734033G320Afs*80.48
SKCMchr1619706943SilentNAR448R0.24
SKCMchr1619706936Missense_MutationnovelS451P0.28
SKCMchr16197068073'UTRnovel0.31
SKCMchr1619714554Missense_MutationnovelP161L0.18
SKCMchr1619714282Missense_MutationnovelA252T0.15
SKCMchr1619715003SilentNAG11G0.38
SKCMchr1619714382SilentnovelI218I0.43
SKCMchr1619710526Missense_Mutationrs370890506E350K0.51
SKCMchr16197068803'UTRnovel0.23
SKCMchr1619714538SilentNAV166V0.13
SKCMchr1619714232SilentNAK268K0.44
SKCMchr1619714771Missense_MutationNAP89S0.33
STADchr1619714244Silentrs370291595A264A0.46
STADchr1619714569Frame_Shift_DelNAK156Rfs*570.12
STADchr1619714391Silentrs377556517K215K0.18
STADchr16197068313'UTRNA0.11
STADchr1619714279Missense_MutationNAP253S0.36
STADchr1619714994SilentNAE14E0.23
STADchr1619710537Missense_Mutationrs79733132T346M0.38
STADchr16197068313'UTRNA0.45
STADchr1619714241Silentrs139419627S265S0.29
STADchr1619711402Frame_Shift_Delrs759734033G320Afs*80.42
STADchr16197068313'UTRNA0.45
STADchr16197068313'UTRNA0.29
STADchr1619711402Frame_Shift_Delrs759734033G320Afs*80.31
STADchr1619714569Frame_Shift_DelNAK156Rfs*570.2
STADchr16197068313'UTRNA0.22
STADchr1619714586Frame_Shift_DelnovelK150Nfs*630.13
TGCTchr1619711380Missense_MutationNAI327V0.13
THYMchr1619714569Frame_Shift_DelNAK156Rfs*570.28
UCECchr16197068313'UTRNA0.2
UCECchr1619714999Missense_MutationnovelP13S0.07
UCECchr1619714297Missense_MutationnovelP247S0.04
UCECchr1619706939Missense_MutationnovelA450T0.28
UCECchr1619707026Missense_Mutationrs372873662D421N0.45
UCECchr1619714419Missense_MutationnovelR206K0.5
UCECchr16197063733'UTRnovel0.24
UCECchr1619714506Missense_MutationnovelA177V0.27
UCECchr1619714656Missense_MutationnovelS127Y0.06
UCECchr1619706940Silentrs377055424N449N0.29
UCECchr16197064653'UTRnovel0.36
UCECchr1619714417Nonsense_MutationNAE207*0.5
UCECchr1619706985Silentrs759086960L434L0.39
UCECchr16197068983'UTRnovel0.21
UCECchr1619714377Missense_MutationnovelQ220R0.29
UCECchr16197065523'UTRnovel0.4
UCECchr1619706940Silentrs377055424N449N0.42
UCECchr1619710551Silentrs201711821R341R0.3
UCECchr16197064743'UTRnovel0.34
UCECchr16197067593'UTRnovel0.33
UCECchr1619710551Silentrs201711821R341R0.19
UCECchr1619714384Frame_Shift_Delrs764099275I218Sfs*410.67
UCECchr1619706958SilentnovelI443I0.45
UCECchr1619714646Missense_MutationnovelK130N0.25
UCECchr1619714824Missense_MutationnovelK71T0.35
UCECchr16197068473'UTRnovel0.21
UCECchr1619710537Missense_Mutationrs79733132T346M0.17
UCECchr1619714160Missense_MutationnovelK292N0.31
UCECchr1619714384Frame_Shift_Delrs764099275I218Sfs*410.52
UCECchr16197068313'UTRNA0.33
UCECchr1619714954Nonsense_MutationNAR28*0.28
UCECchr16197182195'UTRnovel0.3
UCECchr16197068473'UTRnovel0.28
UCECchr1619714472Missense_MutationnovelK188N0.45
UCECchr1619714664SilentnovelS124S0.23
UCECchr1619714581Missense_MutationnovelK152T0.64
UCECchr16197068313'UTRNA0.45
UCECchr1619706972Missense_Mutationrs374832937A439T0.31

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CHOLDEL0.08330.23475

Survival Analysis
CancerP-value Q-value
STAD0.046

Kaplan-Meier Survival Analysis

SARC0.0061

Kaplan-Meier Survival Analysis

MESO0.0084

Kaplan-Meier Survival Analysis

ACC0.038

Kaplan-Meier Survival Analysis

SKCM0.0023

Kaplan-Meier Survival Analysis

BRCA0.026

Kaplan-Meier Survival Analysis

KIRP0.022

Kaplan-Meier Survival Analysis

READ0.0027

Kaplan-Meier Survival Analysis

LAML0.011

Kaplan-Meier Survival Analysis

GBM0.04

Kaplan-Meier Survival Analysis

LIHC0.0001

Kaplan-Meier Survival Analysis

LGG0.045

Kaplan-Meier Survival Analysis

THCA0.0022

Kaplan-Meier Survival Analysis

LUAD0.0068

Kaplan-Meier Survival Analysis

UVM0.013

Kaplan-Meier Survival Analysis

OV0.003

Kaplan-Meier Survival Analysis

Drugs

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Input Drug :


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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000103550 (Gene tree)
Gene ID
400506
Gene Symbol
KNOP1
Alias
101F10.1|FAM191A|TSG118|C16orf88
Full Name
lysine rich nucleolar protein 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
16,428 bases
Position
chr16:19,701,934-19,718,361
Accession
34404
RBP type
non-canonical RBP
Summary
The protein encoded by this gene is a nucleolar protein that interacts with zinc finger 106 protein. The encoded protein has several of the same characteristics as nucleostemin and may be involved in testis development. [provided by RefSeq, Feb 2017]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000565844KNOP1-2031394--- (aa)--
ENST00000219837KNOP1-2016432-ENSP00000219837458 (aa)-Q1ED39
ENST00000564480KNOP1-2021020-ENSP0000045432979 (aa)-H3BMC9
ENST00000568230KNOP1-2051311-ENSP00000455015137 (aa)-H3BNU8
ENST00000567367KNOP1-204595-ENSP00000455369199 (aa)-H3BPL4
Gene Model
Click here to download ENSG00000103550's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000103550's network
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000103550KNOP110071.242ENSMUSG00000030980Knop110073.529Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.HDAFunction
GO:0005730nucleolus-IEAComponent
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