EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr197921446SilentNAL69L0.43
BLCAchr197922458SilentnovelV233V0.25
BLCAchr197922151Silentrs752865998P163P0.18
BLCAchr1979203545'UTRnovel0.2
BLCAchr197922165Missense_Mutationrs772674180P168L0.1
BRCAchr197921702Splice_Regionnovel0.16
CESCchr197922339Missense_Mutationrs763108181S226L0.13
CESCchr197922664Missense_MutationNAS302N0.1
CESCchr197922510Missense_MutationnovelA251T0.59
COADchr197922321Missense_MutationnovelG220D0.33
COADchr197922634Frame_Shift_Delrs767782711P294Qfs*110.36
COADchr197922220SilentnovelP186P0.24
COADchr197922097SilentNAT145T0.41
COADchr197922633Frame_Shift_Insrs536621421A295Sfs*680.38
COADchr1979228133'UTRrs7463722250.19
COADchr197922553Frame_Shift_Delrs769564442Q267Sfs*380.64
COADchr197922556Missense_MutationNAP266H0.11
HNSCchr197920409Missense_MutationnovelL15V0.14SnAPC_2_like
HNSCchr197922124SilentnovelL154L0.1
HNSCchr197922712Missense_MutationnovelP318L0.13
HNSCchr197921501Missense_MutationnovelG88R0.35SnAPC_2_like
LIHCchr197922442Splice_Regionnovel0.52
LUSCchr197922723Missense_MutationnovelP322S0.12
LUSCchr197921482SilentnovelV81V0.18
PAADchr197922111Missense_MutationnovelK150R0.1
PRADchr197922152Missense_Mutationrs374752327A164T0.48
READchr197922693Missense_MutationnovelG312R0.38
READchr197922462Missense_Mutationrs745524032D235N0.35
SKCMchr197922753Missense_MutationNAP332S0.29
SKCMchr197922216Missense_Mutationrs374915726A185V0.31
SKCMchr197922263Missense_MutationnovelD201N0.36
SKCMchr197921736Missense_MutationNAG112E0.56
SKCMchr197922142SilentnovelQ160Q0.53
SKCMchr197922143Missense_MutationnovelE161K0.54
SKCMchr1979227753'UTRrs7604239630.53
SKCMchr197922676Missense_Mutationrs537522374S306L0.27
SKCMchr197922046SilentNAI128I0.41
SKCMchr197922286SilentNAK208K0.32
STADchr197922046SilentNAI128I0.26
STADchr1979227753'UTRrs7604239630.28
STADchr197922717Missense_MutationNAL320M0.05
STADchr1979228303'UTRnovel0.11
STADchr197922634Frame_Shift_Delrs767782711P294Qfs*110.34
STADchr197922249Missense_MutationnovelP196L0.1
STADchr197922634Frame_Shift_Delrs767782711P294Qfs*110.31
STADchr197922479SilentNAL240L0.32
STADchr197922537Missense_MutationNAY260H0.19
STADchr197922553Frame_Shift_Delrs769564442Q267Sfs*380.32
STADchr197922328Frame_Shift_DelnovelE224Sfs*330.36
STADchr197922665Silentrs770302805S302S0.35
STADchr197921532Missense_MutationnovelA98V0.36
STADchr197922634Frame_Shift_Delrs767782711P294Qfs*110.23
STADchr197922123Missense_MutationNAL154P0.29
STADchr197922048Missense_Mutationrs763411378A129V0.26
UCECchr197922634Frame_Shift_Delrs767782711P294Qfs*110.37
UCECchr197922284Missense_MutationnovelK208Q0.13
UCECchr197921712Missense_Mutationrs2303698T104M0.23
UCECchr197922676Missense_Mutationrs537522374S306L0.23
UCECchr197922517Missense_MutationnovelV253A0.35
UCECchr197922553Frame_Shift_Delrs769564442Q267Sfs*380.5
UCECchr197922237Missense_Mutationrs768225274S192L0.3
UCECchr197922553Frame_Shift_Delrs769564442Q267Sfs*380.59
UCECchr197921769Missense_Mutationrs747935820S123L0.21
UCECchr197922283Missense_MutationnovelE207D0.5
UCECchr197921530SilentnovelP97P0.26
UCECchr197921494SilentNAG85G0.17
UCECchr197922055SilentnovelT131T0.36
UCSchr197922676Missense_Mutationrs537522374S306L0.36

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
READDEL0.1030.23023
THCADEL0.0140.10598

Survival Analysis
CancerP-value Q-value
THYM0.049

Kaplan-Meier Survival Analysis

KIRC0.0001

Kaplan-Meier Survival Analysis

SARC0.025

Kaplan-Meier Survival Analysis

MESO0.048

Kaplan-Meier Survival Analysis

ACC0.0018

Kaplan-Meier Survival Analysis

UCS0.03

Kaplan-Meier Survival Analysis

SKCM0.0072

Kaplan-Meier Survival Analysis

BRCA0.00059

Kaplan-Meier Survival Analysis

READ0.0015

Kaplan-Meier Survival Analysis

LAML0.00011

Kaplan-Meier Survival Analysis

UCEC0.014

Kaplan-Meier Survival Analysis

LIHC0.00093

Kaplan-Meier Survival Analysis

UVM0.022

Kaplan-Meier Survival Analysis

Drugs

Select Dataset :


Input Drug :


Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000104976 (Gene tree)
Gene ID
6618
Gene Symbol
SNAPC2
Alias
SNAP45|PTFdelta
Full Name
small nuclear RNA activating complex polypeptide 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
2,943 bases
Position
chr19:7,920,309-7,923,251
Accession
11135
RBP type
canonical RBP
Summary
This gene encodes a subunit of the snRNA-activating protein complex which is associated with the TATA box-binding protein. The encoded protein is necessary for RNA polymerase II and III dependent small-nuclear RNA gene transcription. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2009]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000221573SnAPC_2_likePF11035.84.7e-14211
ENSP00000469475SnAPC_2_likePF11035.87.6e-9311
ENSP00000471962SnAPC_2_likePF11035.81.1e-2811

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
8633057The SNAP45 subunit of the small nuclear RNA (snRNA) activating protein complex is required for RNA polymerase II and III snRNA gene transcription and interacts with the TATA box binding protein.Proc Natl Acad Sci U S A1996 Apr 30Sadowski CL-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000595035SNAPC2-203576--- (aa)--
ENST00000593598SNAPC2-202190--- (aa)--
ENST00000597584SNAPC2-2061413-ENSP0000047196297 (aa)-M0R1L8
ENST00000596520SNAPC2-205457--- (aa)--
ENST00000221573SNAPC2-2011542-ENSP00000221573334 (aa)-Q13487
ENST00000595637SNAPC2-204975-ENSP00000469475279 (aa)-M0QXY9
Gene Model
Click here to download ENSG00000104976's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000104976's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000104976SNAPC29968.421ENSAMEG00000008622SNAPC29666.867Ailuropoda_melanoleuca
ENSG00000104976SNAPC29438.298ENSACIG00000019919-8831.111Amphilophus_citrinellus
ENSG00000104976SNAPC29832.370ENSAOCG00000013265-8831.511Amphiprion_ocellaris
ENSG00000104976SNAPC28035.484ENSAPEG00000010950-8830.519Amphiprion_percula
ENSG00000104976SNAPC28136.129ENSATEG00000003573-5136.129Anabas_testudineus
ENSG00000104976SNAPC29838.547ENSACAG00000026540-9337.353Anolis_carolinensis
ENSG00000104976SNAPC210089.521ENSANAG00000029939SNAPC29689.408Aotus_nancymaae
ENSG00000104976SNAPC29833.333ENSACLG00000013092-9232.827Astatotilapia_calliptera
ENSG00000104976SNAPC28236.486ENSAMXG00000038205snapc26437.500Astyanax_mexicanus
ENSG00000104976SNAPC29969.706ENSBTAG00000014926SNAPC29668.502Bos_taurus
ENSG00000104976SNAPC210088.660ENSCJAG00000006117SNAPC29689.097Callithrix_jacchus
ENSG00000104976SNAPC210071.176ENSCAFG00000031676SNAPC29670.948Canis_familiaris
ENSG00000104976SNAPC210071.176ENSCAFG00020022851SNAPC29670.948Canis_lupus_dingo
ENSG00000104976SNAPC28777.891ENSTSYG00000037088SNAPC29676.868Carlito_syrichta
ENSG00000104976SNAPC29260.215ENSCAPG00000013921-9968.841Cavia_aperea
ENSG00000104976SNAPC210061.125ENSCPOG00000034229SNAPC29758.995Cavia_porcellus
ENSG00000104976SNAPC210088.660ENSCCAG00000034172SNAPC29688.785Cebus_capucinus
ENSG00000104976SNAPC210095.876ENSCATG00000037131SNAPC29695.016Cercocebus_atys
ENSG00000104976SNAPC210065.405ENSCLAG00000006885SNAPC29664.706Chinchilla_lanigera
ENSG00000104976SNAPC210094.845ENSCSAG00000008167SNAPC29694.393Chlorocebus_sabaeus
ENSG00000104976SNAPC29842.752ENSCPBG00000002277SNAPC29242.216Chrysemys_picta_bellii
ENSG00000104976SNAPC210093.814ENSCANG00000040525SNAPC29693.769Colobus_angolensis_palliatus
ENSG00000104976SNAPC210065.070ENSCGRG00001006223Snapc29664.912Cricetulus_griseus_chok1gshd
ENSG00000104976SNAPC210062.626ENSCGRG00000005622Snapc29862.925Cricetulus_griseus_crigri
ENSG00000104976SNAPC28034.932ENSCSEG00000014882-5534.959Cynoglossus_semilaevis
ENSG00000104976SNAPC27830.938ENSCVAG00000011360-8131.298Cyprinodon_variegatus
ENSG00000104976SNAPC29737.500ENSDARG00000036473snapc26041.538Danio_rerio
ENSG00000104976SNAPC29969.139ENSDNOG00000036458SNAPC29568.405Dasypus_novemcinctus
ENSG00000104976SNAPC29667.178ENSDORG00000009155Snapc29470.130Dipodomys_ordii
ENSG00000104976SNAPC29967.656ENSETEG00000012986SNAPC29666.667Echinops_telfairi
ENSG00000104976SNAPC210075.568ENSEASG00005003809SNAPC29675.811Equus_asinus_asinus
ENSG00000104976SNAPC210078.402ENSECAG00000011011SNAPC29678.769Equus_caballus
ENSG00000104976SNAPC210077.219ENSFCAG00000014945SNAPC29676.615Felis_catus
ENSG00000104976SNAPC210061.856ENSFDAG00000001564SNAPC210067.148Fukomys_damarensis
ENSG00000104976SNAPC29434.821ENSGACG00000000727-9839.726Gasterosteus_aculeatus
ENSG00000104976SNAPC29841.500ENSGAGG00000015845SNAPC29241.161Gopherus_agassizii
ENSG00000104976SNAPC210097.605ENSGGOG00000022392SNAPC210097.605Gorilla_gorilla
ENSG00000104976SNAPC210067.898ENSHGLG00000011707SNAPC29964.179Heterocephalus_glaber_female
ENSG00000104976SNAPC210062.376ENSHGLG00100003422SNAPC29759.890Heterocephalus_glaber_male
ENSG00000104976SNAPC29835.328ENSHCOG00000002795-9035.692Hippocampus_comes
ENSG00000104976SNAPC28233.333ENSIPUG00000004844Snapc26333.333Ictalurus_punctatus
ENSG00000104976SNAPC210069.822ENSSTOG00000009102SNAPC29668.923Ictidomys_tridecemlineatus
ENSG00000104976SNAPC210066.092ENSJJAG00000003060Snapc29571.429Jaculus_jaculus
ENSG00000104976SNAPC29934.821ENSKMAG00000007231-6339.394Kryptolebias_marmoratus
ENSG00000104976SNAPC210039.377ENSLOCG00000014065snapc29238.941Lepisosteus_oculatus
ENSG00000104976SNAPC210064.431ENSLAFG00000023323SNAPC29663.830Loxodonta_africana
ENSG00000104976SNAPC210093.814ENSMFAG00000034273SNAPC29694.081Macaca_fascicularis
ENSG00000104976SNAPC210095.876ENSMMUG00000006540SNAPC210094.872Macaca_mulatta
ENSG00000104976SNAPC210095.876ENSMNEG00000039547SNAPC29693.769Macaca_nemestrina
ENSG00000104976SNAPC210095.876ENSMLEG00000031059SNAPC29695.016Mandrillus_leucophaeus
ENSG00000104976SNAPC29431.579ENSMAMG00000018195-5336.154Mastacembelus_armatus
ENSG00000104976SNAPC29833.333ENSMZEG00005009488-9232.827Maylandia_zebra
ENSG00000104976SNAPC210060.606ENSMAUG00000015015Snapc29570.536Mesocricetus_auratus
ENSG00000104976SNAPC210074.257ENSMICG00000035695SNAPC29673.699Microcebus_murinus
ENSG00000104976SNAPC210064.045ENSMOCG00000019080Snapc29663.265Microtus_ochrogaster
ENSG00000104976SNAPC29349.704ENSMODG00000005069-9151.360Monodelphis_domestica
ENSG00000104976SNAPC29834.957ENSMALG00000002335-9234.375Monopterus_albus
ENSG00000104976SNAPC210060.724MGP_CAROLIEiJ_G0030795Snapc29659.538Mus_caroli
ENSG00000104976SNAPC210060.446ENSMUSG00000011837Snapc29566.964Mus_musculus
ENSG00000104976SNAPC210059.889MGP_SPRETEiJ_G0031903Snapc29658.092Mus_spretus
ENSG00000104976SNAPC210070.088ENSMPUG00000008010SNAPC29669.486Mustela_putorius_furo
ENSG00000104976SNAPC28756.207ENSMLUG00000013735-8855.705Myotis_lucifugus
ENSG00000104976SNAPC29354.294ENSMLUG00000006427-9458.000Myotis_lucifugus
ENSG00000104976SNAPC28560.000ENSMLUG00000002738-9360.071Myotis_lucifugus
ENSG00000104976SNAPC210068.343ENSMLUG00000013689-10068.639Myotis_lucifugus
ENSG00000104976SNAPC27760.153ENSMLUG00000001710-7560.232Myotis_lucifugus
ENSG00000104976SNAPC210062.626ENSNGAG00000014201Snapc29665.734Nannospalax_galili
ENSG00000104976SNAPC29833.524ENSNBRG00000003764-9233.435Neolamprologus_brichardi
ENSG00000104976SNAPC2100100.000ENSNLEG00000001250SNAPC210097.904Nomascus_leucogenys
ENSG00000104976SNAPC210053.529ENSMEUG00000014367SNAPC29253.355Notamacropus_eugenii
ENSG00000104976SNAPC29965.460ENSODEG00000011415SNAPC29663.873Octodon_degus
ENSG00000104976SNAPC28037.500ENSONIG00000002078-9337.308Oreochromis_niloticus
ENSG00000104976SNAPC210067.143ENSOCUG00000027536SNAPC27466.469Oryctolagus_cuniculus
ENSG00000104976SNAPC29638.095ENSORLG00000010375-7630.964Oryzias_latipes
ENSG00000104976SNAPC28240.441ENSORLG00015016075-6141.176Oryzias_latipes_hsok
ENSG00000104976SNAPC29931.941ENSOMEG00000003040snapc29032.546Oryzias_melastigma
ENSG00000104976SNAPC29970.030ENSOGAG00000012870SNAPC29669.753Otolemur_garnettii
ENSG00000104976SNAPC210056.436ENSOARG00000003045SNAPC210067.018Ovis_aries
ENSG00000104976SNAPC2100100.000ENSPPAG00000032460SNAPC210094.675Pan_paniscus
ENSG00000104976SNAPC210078.443ENSPPRG00000003265SNAPC29677.882Panthera_pardus
ENSG00000104976SNAPC28269.343ENSPTIG00000016014SNAPC28968.085Panthera_tigris_altaica
ENSG00000104976SNAPC2100100.000ENSPTRG00000042034SNAPC210099.102Pan_troglodytes
ENSG00000104976SNAPC210095.876ENSPANG00000025882SNAPC29695.327Papio_anubis
ENSG00000104976SNAPC28137.241ENSPKIG00000000084snapc25837.692Paramormyrops_kingsleyae
ENSG00000104976SNAPC29444.675ENSPSIG00000016099SNAPC29145.312Pelodiscus_sinensis
ENSG00000104976SNAPC210063.380ENSPEMG00000009767Snapc29662.573Peromyscus_maniculatus_bairdii
ENSG00000104976SNAPC29838.983ENSPCIG00000024986-6446.471Phascolarctos_cinereus
ENSG00000104976SNAPC29838.081ENSPFOG00000012045-9237.812Poecilia_formosa
ENSG00000104976SNAPC29831.793ENSPLAG00000018873-9032.831Poecilia_latipinna
ENSG00000104976SNAPC28732.390ENSPMEG00000002270-9033.133Poecilia_mexicana
ENSG00000104976SNAPC29432.743ENSPREG00000003140-5738.667Poecilia_reticulata
ENSG00000104976SNAPC2100100.000ENSPPYG00000009494SNAPC210098.204Pongo_abelii
ENSG00000104976SNAPC29160.870ENSPCAG00000015864-5581.250Procavia_capensis
ENSG00000104976SNAPC210079.290ENSPCOG00000026672SNAPC29679.385Propithecus_coquereli
ENSG00000104976SNAPC27975.676ENSPVAG00000002296SNAPC27376.667Pteropus_vampyrus
ENSG00000104976SNAPC29736.095ENSPNAG00000020947snapc25938.843Pygocentrus_nattereri
ENSG00000104976SNAPC210061.475ENSRNOG00000001056Snapc29660.684Rattus_norvegicus
ENSG00000104976SNAPC210092.784ENSRBIG00000044314SNAPC29694.393Rhinopithecus_bieti
ENSG00000104976SNAPC210092.784ENSRROG00000043480SNAPC29694.393Rhinopithecus_roxellana
ENSG00000104976SNAPC210091.753ENSSBOG00000011587SNAPC210088.172Saimiri_boliviensis_boliviensis
ENSG00000104976SNAPC210042.342ENSSHAG00000009002-9247.720Sarcophilus_harrisii
ENSG00000104976SNAPC29440.217ENSSMAG00000009095-8930.968Scophthalmus_maximus
ENSG00000104976SNAPC29437.895ENSSDUG00000016949-9130.631Seriola_dumerili
ENSG00000104976SNAPC210055.988ENSSARG00000012954SNAPC28163.370Sorex_araneus
ENSG00000104976SNAPC210074.852ENSSSCG00000013589SNAPC29674.154Sus_scrofa
ENSG00000104976SNAPC29437.500ENSTRUG00000005122-9933.548Takifugu_rubripes
ENSG00000104976SNAPC210075.148ENSTTRG00000010165SNAPC29674.462Tursiops_truncatus
ENSG00000104976SNAPC210072.321ENSUAMG00000021489SNAPC29671.207Ursus_americanus
ENSG00000104976SNAPC29957.143ENSUMAG00000014809SNAPC28664.931Ursus_maritimus
ENSG00000104976SNAPC210071.471ENSVVUG00000026998SNAPC29670.948Vulpes_vulpes
ENSG00000104976SNAPC28137.179ENSXMAG00000027683-5742.384Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003700DNA-binding transcription factor activity7715707.8524284.TASFunction
GO:0005634nucleus7715707.TASComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005829cytosol-IDAComponent
GO:0006355regulation of transcription, DNA-templated-IEAProcess
GO:0006366transcription by RNA polymerase II8524284.TASProcess
GO:0006383transcription by RNA polymerase III8524284.TASProcess
GO:0009301snRNA transcription8524284.TASProcess
GO:0016604nuclear body21873635.IBAComponent
GO:0016604nuclear body-IDAComponent
GO:0042795snRNA transcription by RNA polymerase II-TASProcess
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