EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
28562428Single nucleotide variant in Nucleoporin 107 may be predictive of sensitivity to chemotherapy in patients with ovarian cancer.Pharmacogenet Genomics2017 JulAlanee Sdoi: 10.1097/FPC.0000000000000288.

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1268687102Intronnovel0.46
BLCAchr1268710025Missense_MutationnovelE274D0.29
BLCAchr12686869495'UTRnovel0.23
BLCAchr1268713789Missense_Mutationrs766185011R317H0.24
BLCAchr1268696826Missense_MutationnovelM152I0.51
BLCAchr1268719578Missense_MutationNAG392A0.26
BLCAchr1268709282Missense_MutationnovelQ258H0.39
BLCAchr1268727356Missense_MutationNAE567D0.15
BLCAchr1268732694Missense_MutationNAA686S0.32
BLCAchr1268733586Nonsense_MutationNAE746*0.06
BLCAchr1268726513Frame_Shift_DelnovelS532Pfs*150.11
BLCAchr1268734717Nonsense_MutationnovelE758*0.12
BRCAchr1268713776Missense_Mutationrs139969249V313I0.13
BRCAchr1268687082Intronnovel0.23
BRCAchr1268689036Missense_MutationNAA28G0.13
BRCAchr1268741930Missense_MutationNAC874R0.27
BRCAchr1268735262Missense_Mutationrs375498676D807G0.09
BRCAchr1268732726Missense_MutationNAM696I0.29
BRCAchr1268700737SilentNAL188L0.34
BRCAchr12686869965'UTRnovel0.14
BRCAchr1268721131Missense_MutationNAR422I0.11
BRCAchr1268734824Missense_MutationNAK793N0.14
BRCAchr1268741898Missense_Mutationrs753777420T863M0.14
BRCAchr12686869965'UTRnovel0.27
BRCAchr1268710050Missense_MutationNAE283K0.1
CESCchr1268687126IntronNA0.36
CESCchr1268726523Missense_MutationnovelW534L0.16
CESCchr1268688997Missense_MutationNAR15Q0.1
CESCchr1268731687Missense_MutationnovelL656M0.38
CESCchr1268735302SilentnovelV820V0.4
CESCchr1268689605Nonsense_MutationNAS58*0.22
COADchr1268731228Missense_MutationNAR618H0.18
COADchr1268732735Missense_Mutationrs764792538F699L0.27
COADchr12687425763'UTRnovel0.47
COADchr1268709254Frame_Shift_DelnovelT251Qfs*200.28
COADchr1268741873Missense_MutationnovelP855S0.16
COADchr1268733592Missense_MutationnovelL748V0.13
COADchr1268687115Intronnovel0.18
COADchr1268689565Missense_MutationNAT45A0.42
COADchr12686869455'UTRnovel0.31
COADchr1268689008Missense_MutationnovelV19M0.24
COADchr1268735299SilentNAN819N0.6
COADchr1268689565Missense_MutationNAT45A0.3
COADchr1268689053Missense_Mutationrs752554807L34F0.14
COADchr1268700753Nonsense_Mutationrs774346160R194*0.21
COADchr1268709272Missense_Mutationrs752069314A255V0.28
COADchr1268731219Missense_MutationNAF615C0.09
COADchr1268731706Missense_MutationNAT662N0.42
COADchr1268732639Splice_RegionNAE667E0.26
COADchr1268690602Intronnovel0.31
COADchr12686869755'UTRnovel0.45
COADchr1268731165Missense_MutationnovelP597R0.33
ESCAchr1268733521Missense_Mutationrs780651405Y724C0.22
ESCAchr1268690640Missense_MutationnovelT66R0.32
ESCAchr1268709306Missense_MutationnovelS266R0.15
GBMchr1268733596Missense_MutationnovelC749F0.07
GBMchr1268735299SilentNAN819N0.45
GBMchr12686869775'UTRnovel0.06
GBMchr1268721890Missense_Mutationrs766395497R454Q0.32
GBMchr1268690616Intronnovel0.05
GBMchr1268687127Intronnovel0.19
GBMchr1268731141Missense_Mutationrs752781760I589T0.1
HNSCchr1268741948Missense_Mutationrs747127320M880V0.47
HNSCchr1268687086Intronnovel0.08
HNSCchr1268715627Missense_MutationnovelD324Y0.3
HNSCchr1268721852SilentnovelV441V0.35
HNSCchr12686869345'UTRnovel0.12
HNSCchr12686870005'UTRnovel0.21
KIRCchr12687425773'UTRnovel0.13
KIRCchr12687425793'UTRnovel0.13
KIRCchr1268742437Missense_MutationNAP918Q0.46
KIRPchr1268687214Intronnovel0.35
LAMLchr12686869735'UTRnovel0.16
LGGchr1268700846Frame_Shift_InsnovelL225Sfs*130.13
LGGchr1268691979SilentnovelL105L0.08
LGGchr12686870325'UTRrs7547531990.05
LGGchr1268689566Missense_MutationnovelT45N0.09
LGGchr1268733612Frame_Shift_InsnovelE755Mfs*150.06
LUADchr1268702757Missense_MutationnovelL234F0.26
LUADchr1268733466Missense_MutationnovelE706Q0.21
LUADchr1268727353Missense_MutationnovelE566D0.15
LUADchr1268727354Nonsense_MutationnovelE567*0.15
LUADchr1268690662Missense_MutationNAQ73H0.3
LUADchr1268696817Splice_SitenovelX150_splice0.48
LUADchr1268735315Missense_MutationnovelD825N0.05
LUADchr1268709300SilentnovelR264R0.53
LUADchr1268690736Missense_MutationNAN98I0.17
LUADchr1268691997SilentnovelA111A0.3
LUADchr1268735276Missense_MutationNAD812N0.26
LUADchr1268721970Missense_MutationNAE481Q0.42
LUSCchr1268742366SilentnovelK894K0.28
LUSCchr1268726564Missense_Mutationrs764034347R548C0.32
LUSCchr1268732669Missense_MutationNAW677C0.42
LUSCchr1268690700Missense_Mutationrs138414891S86L0.11
LUSCchr1268692061Missense_MutationNAD133H0.16
LUSCchr1268731666Missense_MutationnovelG649C0.28
LUSCchr1268721873SilentnovelT448T0.2
LUSCchr1268725789SilentnovelD523D0.24
LUSCchr12686870165'UTRnovel0.23
LUSCchr12686870045'UTRnovel0.2
OVchr1268733472Missense_MutationnovelA708S0.07
OVchr12687425113'UTRnovel0.17
OVchr1268741843Missense_MutationNAQ845E0.31
PAADchr1268731652Missense_Mutationrs778938533R644Q0.07
PRADchr1268709309Splice_RegionNAQ267Q0.13
PRADchr1268700753SilentNAR194R0.32
PRADchr1268692001Missense_MutationNAA113S0.11
PRADchr1268700823Missense_MutationnovelV217A0.42
PRADchr1268713738Missense_MutationnovelT300N0.3
READchr12686870235'UTRnovel0.41
READchr12687424853'UTRnovel0.29
READchr1268731673Missense_MutationNAF651C0.28
READchr1268732728Missense_MutationNAR697K0.31
READchr1268710041Nonsense_MutationnovelE280*0.27
READchr1268709299Missense_MutationNAR264Q0.21
SARCchr1268719583Missense_MutationnovelE394Q0.42
SARCchr1268692044Missense_MutationnovelP127H0.39
SARCchr1268727353Missense_MutationnovelE566D0.05
SKCMchr1268721158Missense_MutationNAL431S0.37
SKCMchr1268742443Missense_MutationnovelG920E0.32
SKCMchr1268742444SilentnovelG920G0.32
SKCMchr12686869635'UTRnovel0.44
SKCMchr1268731231Missense_MutationnovelH619R0.31
SKCMchr1268733496Missense_MutationNAP716S0.34
SKCMchr1268715631Missense_MutationNAP325L0.3
SKCMchr1268689538Missense_MutationnovelA36T0.19
SKCMchr12686869635'UTRnovel0.46
SKCMchr12686869815'UTRnovel0.66
SKCMchr1268719608Missense_MutationnovelP402L0.71
SKCMchr1268726529Missense_MutationNAS536F0.69
SKCMchr1268726529Missense_MutationNAS536F0.36
SKCMchr1268689593Missense_Mutationrs139991199R54Q0.07
SKCMchr1268731254Missense_MutationNAE627K0.38
SKCMchr1268700842SilentNAA223A0.23
SKCMchr1268719368Nonsense_MutationnovelQ371*0.3
SKCMchr1268690743SilentnovelS100S0.69
SKCMchr12686869635'UTRnovel0.43
SKCMchr1268721964Missense_MutationnovelP479S0.88
SKCMchr1268715637Missense_MutationNAA327V0.32
SKCMchr1268721136Missense_MutationNAE424K0.07
SKCMchr1268726564Missense_Mutationrs764034347R548C0.43
SKCMchr1268715719SilentnovelI354I0.44
SKCMchr1268715720Missense_MutationnovelR355C0.43
SKCMchr1268733496Missense_MutationNAP716S0.41
SKCMchr12686869715'UTRnovel0.35
SKCMchr12686869725'UTRnovel0.36
STADchr1268715630Missense_MutationNAP325T0.19
STADchr1268726604Missense_MutationnovelG561E0.13
STADchr1268719403SilentNAK382K0.32
STADchr1268742431Missense_MutationnovelL916R0.08
STADchr1268709273Silentrs760015459A255A0.34
STADchr1268702778Frame_Shift_DelnovelV242Lfs*290.26
STADchr1268715657Missense_MutationNAP334S0.29
STADchr1268719616Missense_Mutationrs201038520R405C0.21
STADchr1268734729Missense_MutationNAE762K0.46
STADchr1268734826Missense_MutationNAK794T0.31
STADchr1268733480Missense_MutationNAE710D0.06
STADchr1268692093Missense_MutationNAE143D0.2
STADchr1268715682Missense_MutationNAD342G0.2
STADchr1268713784Silentrs777203994S315S0.18
STADchr1268741901Missense_MutationNAI864T0.35
STADchr1268732648Frame_Shift_DelnovelI672Lfs*30.3
UCECchr1268709299Missense_MutationNAR264Q0.29
UCECchr1268727366Missense_MutationnovelE571K0.09
UCECchr1268700849Missense_MutationNAY226H0.16
UCECchr1268709298Nonsense_Mutationrs768060090R264*0.18
UCECchr1268732643Missense_MutationNAR669C0.36
UCECchr1268733462Missense_MutationNAK704N0.32
UCECchr1268734746Missense_MutationNAM767I0.35
UCECchr1268702775Silentrs778594241F240F0.43
UCECchr1268735286Missense_MutationnovelE815G0.32
UCECchr1268734738Missense_MutationNAK765E0.29
UCECchr12686870325'UTRnovel0.46
UCECchr1268719348Missense_MutationnovelR364Q0.31
UCECchr1268732735Missense_Mutationrs764792538F699L0.19
UCECchr1268689547Missense_MutationnovelD39Y0.06
UCECchr1268710025Missense_MutationnovelE274D0.07
UCECchr1268741963Missense_Mutationrs768676886R885C0.27
UCECchr12686870525'UTRrs7763591440.5
UCECchr1268689023Missense_MutationNAR24W0.33
UCECchr12686869785'UTRnovel0.12
UCECchr1268715684Nonsense_MutationNAE343*0.09
UCECchr1268725775Missense_MutationnovelL519I0.16
UCECchr1268689610Nonsense_MutationnovelR60*0.35
UCECchr1268710032Missense_MutationnovelA277T0.16
UCECchr1268733502Missense_MutationnovelD718Y0.44
UCECchr1268731134Missense_MutationnovelN587H0.34
UCECchr1268732730Missense_MutationnovelK698E0.2
UCECchr1268689610Nonsense_MutationnovelR60*0.32
UCECchr12686869415'UTRnovel0.31
UCECchr1268731652Missense_Mutationrs778938533R644Q0.12
UCECchr1268709272Missense_Mutationrs752069314A255V0.36
UCECchr1268713775Silentrs370818496Y312Y0.38
UCECchr1268733570SilentnovelD740D0.37
UCECchr1268689610Nonsense_MutationnovelR60*0.45
UCECchr1268721148Missense_MutationnovelY428H0.58
UCECchr1268687194Intronnovel0.29
UCECchr1268731254Nonsense_MutationnovelE627*0.14
UCECchr1268719636Nonsense_MutationnovelC411*0.19
UCECchr1268731227Missense_Mutationrs780361704R618C0.4
UCECchr1268734787Missense_MutationnovelT781I0.19
UCECchr1268725794Missense_MutationNAD525G0.06
UCECchr1268715684Nonsense_MutationNAE343*0.24
UCECchr12687425403'UTRnovel0.3
UCECchr1268715721Missense_Mutationrs747135247R355H0.2
UCECchr1268731228Missense_MutationNAR618H0.39
UCECchr1268700832Missense_MutationnovelR220M0.33
UCECchr1268709239Missense_MutationNAA244D0.39
UCECchr1268722104Splice_RegionNAN486N0.28
UCECchr1268709245Missense_MutationnovelN246I0.39
UCECchr1268713760Silentrs775863283R307R0.44
UCECchr1268719595Missense_MutationnovelV398I0.23
UCECchr1268721169Missense_MutationnovelL435F0.36
UCECchr1268700781Frame_Shift_InsnovelT205Nfs*230.44
UCSchr1268690606Intronnovel0.33
UCSchr1268702758Nonsense_MutationnovelE235*0.4

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCDEL0.03330.20414
DLBCAMP0.20830.085003
GBMDEL0.08490.0052524
LUSCAMP0.24150.00092392
PAADAMP0.11410.0061805
READDEL0.09090.064633
SKCMAMP0.12269.9717e-11

Survival Analysis
CancerP-value Q-value
THYM0.0023

Kaplan-Meier Survival Analysis

KIRC0.0011

Kaplan-Meier Survival Analysis

STAD0.037

Kaplan-Meier Survival Analysis

SARC0.01

Kaplan-Meier Survival Analysis

MESO0.00011

Kaplan-Meier Survival Analysis

ACC0.0043

Kaplan-Meier Survival Analysis

PRAD0.02

Kaplan-Meier Survival Analysis

KIRP0.0032

Kaplan-Meier Survival Analysis

PAAD0.027

Kaplan-Meier Survival Analysis

READ0.049

Kaplan-Meier Survival Analysis

LAML0.015

Kaplan-Meier Survival Analysis

KICH0.0015

Kaplan-Meier Survival Analysis

LIHC0.00011

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

LUAD0.0061

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000111581 (Gene tree)
Gene ID
57122
Gene Symbol
NUP107
Alias
NUP84
Full Name
nucleoporin 107
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
59,076 bases
Position
chr12:68,686,734-68,745,809
Accession
29914
RBP type
non-canonical RBP
Summary
This gene encodes a member of the nucleoporin family. The protein is localized to the nuclear rim and is an essential component of the nuclear pore complex (NPC). All molecules entering or leaving the nucleus either diffuse through or are actively transported by the NPC. Alternate transcriptional splice variants of this gene have been observed but have not been thoroughly characterized. [provided by RefSeq, Jul 2008]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000540453NUP107-212573--- (aa)--
ENST00000537662NUP107-207825--- (aa)--
ENST00000539373NUP107-210278--- (aa)--
ENST00000535718NUP107-2052655-ENSP00000445567103 (aa)-G3V1T4
ENST00000401003NUP107-203729--- (aa)--
ENST00000538549NUP107-208678-ENSP0000044011685 (aa)-F5GY77
ENST00000378905NUP107-2022859-ENSP00000368185686 (aa)-P57740
ENST00000538993NUP107-209836-ENSP0000044133480 (aa)-H0YG15
ENST00000535333NUP107-204683--- (aa)--
ENST00000545140NUP107-213516--- (aa)--
ENST00000539906NUP107-2113004-ENSP00000441448896 (aa)-P57740
ENST00000537598NUP107-206695--- (aa)--
ENST00000229179NUP107-2016457XM_005269037ENSP00000229179925 (aa)XP_005269094P57740
Gene Model
Click here to download ENSG00000111581's gene model file
Pathways
Pathway IDPathway NameSource
hsa03013RNA transportKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000111581's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000776kinetochore17363900.IDAComponent
GO:0000777condensed chromosome kinetochore-IEAComponent
GO:0000973posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery21873635.IBAProcess
GO:0005515protein binding11564755.15146057.17363900.24407287.26411495.26496610.27194810.IPIFunction
GO:0005635nuclear envelope-TASComponent
GO:0005643nuclear pore11564755.11684705.12802065.15229283.26411495.IDAComponent
GO:0005829cytosol-TASComponent
GO:0006110regulation of glycolytic process-TASProcess
GO:0006406mRNA export from nucleus21873635.IBAProcess
GO:0006406mRNA export from nucleus11684705.IDAProcess
GO:0006406mRNA export from nucleus-TASProcess
GO:0006409tRNA export from nucleus-TASProcess
GO:0006606protein import into nucleus21873635.IBAProcess
GO:0008585female gonad development26485283.IMPProcess
GO:0016020membrane19946888.HDAComponent
GO:0016032viral process-TASProcess
GO:0016925protein sumoylation-TASProcess
GO:0017056structural constituent of nuclear pore21873635.IBAFunction
GO:0017056structural constituent of nuclear pore11684705.IDAFunction
GO:0017056structural constituent of nuclear pore15229283.IMPFunction
GO:0019083viral transcription-TASProcess
GO:0031080nuclear pore outer ring21873635.IBAComponent
GO:0031080nuclear pore outer ring17360435.IDAComponent
GO:0031080nuclear pore outer ring15146057.17363900.NASComponent
GO:0031965nuclear membrane12802065.15229283.IDAComponent
GO:0034399nuclear periphery15229283.IDAComponent
GO:0043657host cell-IEAComponent
GO:0051292nuclear pore complex assembly15229283.IMPProcess
GO:0060964regulation of gene silencing by miRNA-TASProcess
GO:0072006nephron development30179222.IMPProcess
GO:0075733intracellular transport of virus-TASProcess
GO:1900034regulation of cellular response to heat-TASProcess
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