RNA binding proteome (RBPome)
PID | Title | Method |
Time | Author | Doi |
---|
30607034 | Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS) | OOPS & HEK293 | 2019 Jan 3 | Queiroz RML | DOI: 10.1038/s41587-018-0001-2 |
30528433 | The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest | XRNAX & HEK293 | 2018 Dec 6 | Trendel J | DOI: 10.1016/j.cell.2018.11.004 |
29431736 | Capturing the interactome of newly transcribed RNA | PolyT-RICK & Hela | 2018 Feb 12 | Bao X | DOI: 10.1038/nmeth.4595 |
29431736 | Capturing the interactome of newly transcribed RNA | RICK & Hela | 2018 Feb 12 | Bao X | DOI: 10.1038/nmeth.4595 |
30528433 | The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest | XRNAX & Hela | 2018 Dec 6 | Trendel J | DOI: 10.1016/j.cell.2018.11.004 |
30607034 | Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS) | OOPS & U2OS | 2019 Jan 3 | Queiroz RML | DOI: 10.1038/s41587-018-0001-2 |
30352994 | Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture | RIC & Jurkat | 2018 Oct 23 | Perez-Perri JI | DOI:10.1038/s41467-018-06557-8 |
Protein-Protein Interaction (PPI)
* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl ID | Gene Symbol | Coverage | Identiy |
Ortholog | Gene Symbol | Coverage | Identiy |
Species |
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ENSG00000112118 | MCM3 | 79 | 32.985 | WBGene00003157 | mcm-5 | 84 | 33.084 | Caenorhabditis_elegans |
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ENSG00000112118 | MCM3 | 85 | 30.606 | FBgn0017577 | Mcm5 | 85 | 31.390 | Drosophila_melanogaster |
---|
ENSG00000112118 | MCM3 | 78 | 33.236 | FBgn0020633 | Mcm7 | 86 | 33.382 | Drosophila_melanogaster |
---|
ENSG00000112118 | MCM3 | 68 | 37.324 | ENSG00000166508 | MCM7 | 76 | 40.257 | Homo_sapiens |
---|
ENSG00000112118 | MCM3 | 79 | 31.060 | ENSG00000076003 | MCM6 | 79 | 30.835 | Homo_sapiens |
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ENSG00000112118 | MCM3 | 82 | 31.878 | ENSG00000100297 | MCM5 | 81 | 32.767 | Homo_sapiens |
---|
ENSG00000112118 | MCM3 | 100 | 92.638 | ENSMUSG00000041859 | Mcm3 | 100 | 92.638 | Mus_musculus |
---|
ENSG00000112118 | MCM3 | 71 | 37.005 | ENSMUSG00000029730 | Mcm7 | 70 | 37.367 | Mus_musculus |
---|
ENSG00000112118 | MCM3 | 81 | 49.858 | YEL032W | | 71 | 49.858 | Saccharomyces_cerevisiae |
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ENSG00000112118 | MCM3 | 80 | 31.171 | YLR274W | MCM5 | 86 | 31.786 | Saccharomyces_cerevisiae |
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ENSG00000112118 | MCM3 | 67 | 32.792 | YGL201C | | 55 | 33.061 | Saccharomyces_cerevisiae |
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