EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr192328463SilentnovelK7K0.13
BLCAchr192328415Missense_MutationnovelI23M0.14LSM
BLCAchr1923285675'UTRnovel0.44
BLCAchr1923285985'UTRnovel0.5
BRCAchr1923285985'UTRnovel0.65
CESCchr192324162SilentnovelL44L0.45
CESCchr1923285985'UTRnovel0.55
ESCAchr192328429Missense_MutationnovelI19F0.16LSM
ESCAchr192328430Nonsense_MutationnovelY18*0.16LSM
LUADchr1923286035'UTRnovel0.25
LUADchr192324191Nonsense_MutationnovelG35*0.47LSM
LUADchr192324193Missense_MutationnovelS34I0.44LSM
SKCMchr192328414Missense_MutationnovelR24W0.22LSM
SKCMchr192321788SilentnovelT68T0.29
SKCMchr192328390Nonsense_MutationNAE32*0.33LSM
UCECchr192324174Silentrs748476607F40F0.32
UCECchr1923215963'UTRnovel0.38

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
KIRPDEL0.05210.058467
LIHCDEL0.18924.7028e-08
PAADDEL0.14670.0060878
READDEL0.13330.23023
THCADEL0.0140.10598
UCSDEL0.758.0449e-14

Survival Analysis
CancerP-value Q-value
STAD0.0058

Kaplan-Meier Survival Analysis

MESO0.0022

Kaplan-Meier Survival Analysis

ACC0.00011

Kaplan-Meier Survival Analysis

PRAD0.0087

Kaplan-Meier Survival Analysis

LUSC0.0014

Kaplan-Meier Survival Analysis

PAAD0.014

Kaplan-Meier Survival Analysis

BLCA0.00015

Kaplan-Meier Survival Analysis

CESC0.0065

Kaplan-Meier Survival Analysis

UCEC0.0001

Kaplan-Meier Survival Analysis

LIHC0.012

Kaplan-Meier Survival Analysis

UVM0.0031

Kaplan-Meier Survival Analysis

OV0.003

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000130332 (Gene tree)
Gene ID
51690
Gene Symbol
LSM7
Alias
YNL147W
Full Name
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
7,104 bases
Position
chr19:2,321,517-2,328,620
Accession
20470
RBP type
canonical RBP
Summary
Sm-like proteins were identified in a variety of organisms based on sequence homology with the Sm protein family (see SNRPD2; MIM 601061). Sm-like proteins contain the Sm sequence motif, which consists of 2 regions separated by a linker of variable length that folds as a loop. The Sm-like proteins are thought to form a stable heteromer present in tri-snRNP particles, which are important for pre-mRNA splicing.[supplied by OMIM, Apr 2004]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000252622LSMPF01423.221.4e-2011
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000591515LSM7-206710--- (aa)--
ENST00000591745LSM7-207543--- (aa)--
ENST00000589532LSM7-205539--- (aa)--
ENST00000252622LSM7-201529XM_017026869ENSP00000252622103 (aa)XP_016882358Q9UK45
ENST00000587502LSM7-204575-ENSP0000048500749 (aa)-A0A087X2I5
ENST00000585395LSM7-202621-ENSP0000046655660 (aa)-K7EML7
ENST00000585409LSM7-203512-ENSP0000046714535 (aa)-K7ENY5
Gene Model
Click here to download ENSG00000130332's gene model file
Pathways
Pathway IDPathway NameSource
hsa03018RNA degradationKEGG
hsa03040SpliceosomeKEGG
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000130332rs8103741192325006AEducational attainment (MTAG)30038396[0.0078-0.0144] unit decrease0.0111EFO_0004784
ENSG00000130332rs8103741192325006AEducational attainment (years of education)30038396[0.0071-0.0145] unit decrease0.0108EFO_0004784
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000130332's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000130332LSM77235.526ENSG00000128534LSM87335.526
ENSG00000130332LSM76936.620ENSG00000143977SNRPG9139.394
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000130332LSM79195.745ENSAPOG00000015573lsm78195.745Acanthochromis_polyacanthus
ENSG00000130332LSM7100100.000ENSAMEG00000005484LSM710097.087Ailuropoda_melanoleuca
ENSG00000130332LSM79594.898ENSACIG00000006498lsm77894.898Amphilophus_citrinellus
ENSG00000130332LSM710095.918ENSAOCG00000001077lsm79295.050Amphiprion_ocellaris
ENSG00000130332LSM710095.918ENSAPEG00000024447lsm79295.050Amphiprion_percula
ENSG00000130332LSM710095.918ENSAPEG00000000694lsm710095.146Amphiprion_percula
ENSG00000130332LSM710095.918ENSATEG00000008557lsm710095.146Anabas_testudineus
ENSG00000130332LSM7100100.000ENSANAG00000037196-100100.000Aotus_nancymaae
ENSG00000130332LSM79697.872ENSANAG00000022222-10091.262Aotus_nancymaae
ENSG00000130332LSM710095.918ENSACLG00000021021lsm710094.175Astatotilapia_calliptera
ENSG00000130332LSM710095.918ENSAMXG00000037622lsm710095.146Astyanax_mexicanus
ENSG00000130332LSM7100100.000ENSBTAG00000004521LSM7100100.000Bos_taurus
ENSG00000130332LSM79757.000WBGene00003081lsm-79657.000Caenorhabditis_elegans
ENSG00000130332LSM79496.970ENSCJAG00000039713-68100.000Callithrix_jacchus
ENSG00000130332LSM7100100.000ENSCAFG00000019409LSM79899.010Canis_familiaris
ENSG00000130332LSM7100100.000ENSCAFG00020018168LSM77499.010Canis_lupus_dingo
ENSG00000130332LSM7100100.000ENSCHIG00000023663LSM710098.058Capra_hircus
ENSG00000130332LSM7100100.000ENSCAPG00000014534LSM7100100.000Cavia_aperea
ENSG00000130332LSM7100100.000ENSCPOG00000014025LSM7100100.000Cavia_porcellus
ENSG00000130332LSM7100100.000ENSCCAG00000035456LSM799100.000Cebus_capucinus
ENSG00000130332LSM7100100.000ENSCATG00000023543LSM7100100.000Cercocebus_atys
ENSG00000130332LSM7100100.000ENSCLAG00000011635LSM7100100.000Chinchilla_lanigera
ENSG00000130332LSM7100100.000ENSCSAG00000011599LSM7100100.000Chlorocebus_sabaeus
ENSG00000130332LSM710095.918ENSCPBG00000021317LSM77794.444Chrysemys_picta_bellii
ENSG00000130332LSM79480.435ENSCING00000022134-9780.208Ciona_intestinalis
ENSG00000130332LSM7100100.000ENSCANG00000035525LSM7100100.000Colobus_angolensis_palliatus
ENSG00000130332LSM710099.029ENSCGRG00001000807-10099.029Cricetulus_griseus_chok1gshd
ENSG00000130332LSM78690.000ENSCGRG00001016005-9288.889Cricetulus_griseus_chok1gshd
ENSG00000130332LSM710097.959ENSCGRG00000014355-9799.010Cricetulus_griseus_crigri
ENSG00000130332LSM78690.000ENSCGRG00000006821-9288.889Cricetulus_griseus_crigri
ENSG00000130332LSM710095.918ENSCSEG00000014900lsm78695.050Cynoglossus_semilaevis
ENSG00000130332LSM710095.918ENSCVAG00000021091lsm79496.040Cyprinodon_variegatus
ENSG00000130332LSM710097.959ENSDARG00000058328lsm710095.146Danio_rerio
ENSG00000130332LSM710097.959ENSDORG00000024460Lsm710098.039Dipodomys_ordii
ENSG00000130332LSM79476.531FBgn0261068LSm78976.531Drosophila_melanogaster
ENSG00000130332LSM710097.959ENSETEG00000012788LSM79997.030Echinops_telfairi
ENSG00000130332LSM710084.466ENSEBUG00000016992lsm79984.466Eptatretus_burgeri
ENSG00000130332LSM78061.538ENSEBUG00000010470-7959.036Eptatretus_burgeri
ENSG00000130332LSM710096.117ENSECAG00000001440LSM76696.117Equus_caballus
ENSG00000130332LSM7100100.000ENSFCAG00000003445LSM710099.029Felis_catus
ENSG00000130332LSM710095.918ENSFALG00000011912LSM710097.030Ficedula_albicollis
ENSG00000130332LSM7100100.000ENSFDAG00000007661LSM7100100.000Fukomys_damarensis
ENSG00000130332LSM710095.918ENSFHEG00000006349lsm79096.040Fundulus_heteroclitus
ENSG00000130332LSM710091.837ENSGMOG00000013320lsm710091.262Gadus_morhua
ENSG00000130332LSM710096.117ENSGAFG00000013902lsm710096.117Gambusia_affinis
ENSG00000130332LSM710093.878ENSGACG00000010390lsm710092.233Gasterosteus_aculeatus
ENSG00000130332LSM7100100.000ENSGGOG00000010172LSM7100100.000Gorilla_gorilla
ENSG00000130332LSM710095.918ENSHBUG00000004616lsm710094.175Haplochromis_burtoni
ENSG00000130332LSM7100100.000ENSHGLG00000010587LSM7100100.000Heterocephalus_glaber_female
ENSG00000130332LSM7100100.000ENSHGLG00100000852LSM7100100.000Heterocephalus_glaber_male
ENSG00000130332LSM710095.918ENSHCOG00000020252lsm710094.059Hippocampus_comes
ENSG00000130332LSM710095.146ENSIPUG00000024724lsm710095.146Ictalurus_punctatus
ENSG00000130332LSM7100100.000ENSSTOG00000028372LSM799100.000Ictidomys_tridecemlineatus
ENSG00000130332LSM79898.020ENSJJAG00000001936Lsm79898.020Jaculus_jaculus
ENSG00000130332LSM710096.117ENSKMAG00000022151lsm710096.117Kryptolebias_marmoratus
ENSG00000130332LSM710095.918ENSLBEG00000005203lsm710094.175Labrus_bergylta
ENSG00000130332LSM710097.959ENSLACG00000015700LSM710097.087Latimeria_chalumnae
ENSG00000130332LSM710097.959ENSLOCG00000004356lsm710096.117Lepisosteus_oculatus
ENSG00000130332LSM7100100.000ENSLAFG00000029302LSM798100.000Loxodonta_africana
ENSG00000130332LSM7100100.000ENSMFAG00000044572LSM7100100.000Macaca_fascicularis
ENSG00000130332LSM7100100.000ENSMMUG00000000452LSM7100100.000Macaca_mulatta
ENSG00000130332LSM7100100.000ENSMNEG00000004393LSM7100100.000Macaca_nemestrina
ENSG00000130332LSM7100100.000ENSMLEG00000030852LSM7100100.000Mandrillus_leucophaeus
ENSG00000130332LSM710095.918ENSMAMG00000005410lsm710094.175Mastacembelus_armatus
ENSG00000130332LSM710095.918ENSMZEG00005028055lsm710094.175Maylandia_zebra
ENSG00000130332LSM710098.058ENSMGAG00000000750LSM78998.058Meleagris_gallopavo
ENSG00000130332LSM710099.029ENSMAUG00000009276Lsm710099.029Mesocricetus_auratus
ENSG00000130332LSM7100100.000ENSMICG00000028619-100100.000Microcebus_murinus
ENSG00000130332LSM7100100.000ENSMICG00000009988-10099.029Microcebus_murinus
ENSG00000130332LSM710099.029ENSMOCG00000016925Lsm710099.029Microtus_ochrogaster
ENSG00000130332LSM710095.918ENSMMOG00000019645lsm79895.146Mola_mola
ENSG00000130332LSM710099.029ENSMODG00000004722LSM710099.029Monodelphis_domestica
ENSG00000130332LSM710095.918ENSMALG00000014511lsm77994.175Monopterus_albus
ENSG00000130332LSM710097.087MGP_CAROLIEiJ_G0015607Lsm710097.087Mus_caroli
ENSG00000130332LSM710097.087ENSMUSG00000035215Lsm710097.087Mus_musculus
ENSG00000130332LSM710097.087MGP_PahariEiJ_G0031020Lsm710097.087Mus_pahari
ENSG00000130332LSM710097.087MGP_SPRETEiJ_G0016425Lsm710097.087Mus_spretus
ENSG00000130332LSM710092.233ENSMLUG00000024002-9492.233Myotis_lucifugus
ENSG00000130332LSM710097.959ENSMLUG00000013097-10097.087Myotis_lucifugus
ENSG00000130332LSM710098.058ENSNGAG00000021637Lsm710098.058Nannospalax_galili
ENSG00000130332LSM710095.918ENSNBRG00000015770lsm78794.059Neolamprologus_brichardi
ENSG00000130332LSM710095.918ENSNBRG00000001237-8292.233Neolamprologus_brichardi
ENSG00000130332LSM7100100.000ENSNLEG00000002265LSM7100100.000Nomascus_leucogenys
ENSG00000130332LSM7100100.000ENSODEG00000013590-100100.000Octodon_degus
ENSG00000130332LSM710095.918ENSODEG00000018769-10093.204Octodon_degus
ENSG00000130332LSM710087.755ENSODEG00000008190-10079.612Octodon_degus
ENSG00000130332LSM710095.918ENSONIG00000001801lsm78994.175Oreochromis_niloticus
ENSG00000130332LSM710095.918ENSORLG00000023951lsm710095.146Oryzias_latipes
ENSG00000130332LSM710095.918ENSORLG00020022226lsm710095.146Oryzias_latipes_hni
ENSG00000130332LSM710095.918ENSORLG00015020044lsm79495.050Oryzias_latipes_hsok
ENSG00000130332LSM710095.918ENSOMEG00000012806lsm710095.146Oryzias_melastigma
ENSG00000130332LSM710088.350ENSOGAG00000024373-10088.350Otolemur_garnettii
ENSG00000130332LSM79898.020ENSOGAG00000000144-9998.020Otolemur_garnettii
ENSG00000130332LSM7100100.000ENSOARG00000014013LSM710098.058Ovis_aries
ENSG00000130332LSM7100100.000ENSPPAG00000026500LSM7100100.000Pan_paniscus
ENSG00000130332LSM7100100.000ENSPPRG00000008624LSM710099.029Panthera_pardus
ENSG00000130332LSM7100100.000ENSPTIG00000016252LSM79899.010Panthera_tigris_altaica
ENSG00000130332LSM7100100.000ENSPTRG00000010233LSM7100100.000Pan_troglodytes
ENSG00000130332LSM7100100.000ENSPANG00000020668LSM7100100.000Papio_anubis
ENSG00000130332LSM710097.959ENSPKIG00000011325lsm710097.087Paramormyrops_kingsleyae
ENSG00000130332LSM710097.959ENSPSIG00000017149LSM78998.020Pelodiscus_sinensis
ENSG00000130332LSM710095.918ENSPMGG00000006498lsm710095.146Periophthalmus_magnuspinnatus
ENSG00000130332LSM710099.029ENSPCIG00000030454LSM710099.029Phascolarctos_cinereus
ENSG00000130332LSM710093.878ENSPFOG00000012467lsm79193.204Poecilia_formosa
ENSG00000130332LSM710093.878ENSPLAG00000000252lsm79494.118Poecilia_latipinna
ENSG00000130332LSM710093.878ENSPMEG00000000587lsm79494.118Poecilia_mexicana
ENSG00000130332LSM79493.939ENSPREG00000016718lsm76576.543Poecilia_reticulata
ENSG00000130332LSM798100.000ENSPPYG00000009348-5097.260Pongo_abelii
ENSG00000130332LSM7100100.000ENSPCOG00000017177LSM7100100.000Propithecus_coquereli
ENSG00000130332LSM710095.918ENSPNYG00000006938lsm710094.175Pundamilia_nyererei
ENSG00000130332LSM710095.918ENSPNAG00000010141lsm710095.146Pygocentrus_nattereri
ENSG00000130332LSM710098.058ENSRNOG00000019552Lsm710098.058Rattus_norvegicus
ENSG00000130332LSM7100100.000ENSRBIG00000035978LSM7100100.000Rhinopithecus_bieti
ENSG00000130332LSM7100100.000ENSRROG00000034044LSM7100100.000Rhinopithecus_roxellana
ENSG00000130332LSM78647.826YNL147W-8047.826Saccharomyces_cerevisiae
ENSG00000130332LSM7100100.000ENSSBOG00000034899LSM7100100.000Saimiri_boliviensis_boliviensis
ENSG00000130332LSM710095.146ENSSFOG00015006728lsm710095.146Scleropages_formosus
ENSG00000130332LSM710095.918ENSSMAG00000004195lsm79395.050Scophthalmus_maximus
ENSG00000130332LSM710095.918ENSSDUG00000001863lsm710095.146Seriola_dumerili
ENSG00000130332LSM710095.918ENSSLDG00000016339lsm710095.146Seriola_lalandi_dorsalis
ENSG00000130332LSM710095.918ENSSPAG00000015221lsm710095.146Stegastes_partitus
ENSG00000130332LSM7100100.000ENSSSCG00000013463LSM799100.000Sus_scrofa
ENSG00000130332LSM710095.918ENSTGUG00000000067LSM710097.030Taeniopygia_guttata
ENSG00000130332LSM710095.918ENSTRUG00000022913lsm710095.146Takifugu_rubripes
ENSG00000130332LSM710095.918ENSTNIG00000015525lsm710095.146Tetraodon_nigroviridis
ENSG00000130332LSM710085.714ENSTBEG00000016602LSM710087.143Tupaia_belangeri
ENSG00000130332LSM7100100.000ENSUAMG00000000912LSM78697.087Ursus_americanus
ENSG00000130332LSM7100100.000ENSUMAG00000006556LSM77999.010Ursus_maritimus
ENSG00000130332LSM7100100.000ENSVVUG00000002640LSM76598.592Vulpes_vulpes
ENSG00000130332LSM710093.878ENSXETG00000022166lsm710095.050Xenopus_tropicalis
ENSG00000130332LSM710095.918ENSXCOG00000002572lsm710095.098Xiphophorus_couchianus
ENSG00000130332LSM710096.117ENSXMAG00000018630lsm710096.117Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome28781166.IDAProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0005515protein binding12165861.14603251.14667819.15231747.19628699.21988832.22365833.25416956.IPIFunction
GO:0005634nucleus26912367.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005688U6 snRNP21873635.IBAComponent
GO:0005689U12-type spliceosomal complex21873635.IBAComponent
GO:0005829cytosol-TASComponent
GO:0017070U6 snRNA binding10523320.NASFunction
GO:0043928exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay-TASProcess
GO:0046540U4/U6 x U5 tri-snRNP complex26912367.IDAComponent
GO:0071004U2-type prespliceosome21873635.IBAComponent
GO:0071005U2-type precatalytic spliceosome28781166.IDAComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent
GO:0120115Lsm2-8 complex10523320.IDAComponent
GO:1990726Lsm1-7-Pat1 complex21873635.IBAComponent
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