EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr1917772469Missense_MutationnovelM203V0.48
BLCAchr1917784865Missense_MutationnovelQ789H0.3
BLCAchr1917766685In_Frame_DelnovelW71_E72del0.36
BLCAchr1917762765Missense_MutationnovelE11K0.08
BLCAchr1917784743Missense_MutationNAQ749E0.25
BLCAchr1917775485SilentnovelF325F0.27
BLCAchr1917766681Silentrs780435067P69P0.52
BLCAchr1917778612Missense_MutationNAS452F0.6
BLCAchr1917770481Missense_MutationnovelS131R0.28U1snRNP70_N
BLCAchr1917770543Missense_Mutationrs770292906R152Q0.51U1snRNP70_N
BLCAchr1917781804Missense_Mutationrs534109677R641C0.6
BLCAchr1917781722SilentNAR613R0.83
BLCAchr1917786584Missense_MutationNAE813K0.4
BLCAchr1917772651Missense_MutationNAE234K0.13
BLCAchr1917764385Missense_MutationnovelE44K0.21
BLCAchr1917770568Missense_MutationnovelE160D0.24U1snRNP70_N
BLCAchr1917781817Missense_MutationnovelP645L0.27
BRCAchr1917778144Missense_MutationNAE423Q0.16
BRCAchr1917776259Missense_MutationNAR399C0.29
BRCAchr1917772463Nonsense_MutationNAQ201*0.44
BRCAchr1917786574Nonsense_MutationnovelW809*0.05
BRCAchr1917784809Missense_MutationNAE771K0.86
BRCAchr1917778643SilentNAS462S0.6
BRCAchr1917764390Missense_Mutationrs747956233E45D0.13
CESCchr1917774445Missense_Mutationrs530821806R296Q0.46
CESCchr1917762803SilentnovelV23V0.33
COADchr1917766702SilentNAV76V0.33
COADchr1917778207Missense_MutationnovelF444L0.06
COADchr1917774408Missense_Mutationrs142820853R284W0.16
COADchr1917776248Missense_MutationnovelG395D0.4
COADchr1917772537Silentrs779991590T225T0.25
COADchr1917784224SilentnovelL739L0.41
COADchr1917774237Splice_SitenovelX264_splice0.23
COADchr1917783155Silentrs747446709N692N0.36
COADchr1917770542Missense_MutationnovelR152W0.32U1snRNP70_N
COADchr1917772537Silentrs779991590T225T0.28
COADchr1917781769Missense_MutationnovelA629V0.09
COADchr1917770793Missense_Mutationrs144793428A164V0.18U1snRNP70_N
COADchr1917784732Missense_Mutationrs151277101R745H0.34
COADchr19177884013'UTRnovel0.36
COADchr1917772714Missense_MutationNAS255R0.11
COADchr1917778769SilentnovelS504S0.27
COADchr1917772534Missense_MutationnovelD224E0.07
COADchr1917784813Missense_MutationnovelY772C0.27
COADchr1917764404Missense_MutationNAA50V0.36
COADchr19177883403'UTRrs1920384260.39
COADchr1917766753Missense_MutationNAQ93H0.16
DLBCchr1917786619Silentrs370950809S824S0.76
ESCAchr19177884753'UTRrs5522578170.16
ESCAchr19177551305'UTRrs3746966120.16
ESCAchr1917766707Missense_MutationnovelS78L0.26
GBMchr1917766791Missense_MutationnovelQ106R0.12U1snRNP70_N
GBMchr1917781776SilentnovelA631A0.13
GBMchr1917783021Missense_MutationnovelL648M0.14
GBMchr1917766686Frame_Shift_InsnovelW71Cfs*190.48
GBMchr1917787765Missense_MutationnovelG856R0.16
GBMchr1917784852Missense_MutationnovelL785H0.17
HNSCchr1917781503Missense_MutationnovelL598M0.21
HNSCchr1917764411Silentrs148025294A52A0.16
HNSCchr1917776673Missense_Mutationrs760083911P416A0.22
HNSCchr1917766759SilentnovelL95L0.59
HNSCchr1917784825Missense_Mutationrs747467663P776L0.26
HNSCchr1917776079Missense_Mutationrs751850968R367L0.44
HNSCchr1917781467Missense_MutationnovelP586S0.64
KIRCchr19177551425'UTRnovel0.18
KIRPchr19177884343'UTRnovel0.4
KIRPchr1917770526Missense_MutationnovelM146I0.39U1snRNP70_N
LGGchr1917775468Missense_MutationNAV320M0.1
LGGchr1917778191SilentnovelP438P0.38
LGGchr1917784880SilentNAV794V0.14
LIHCchr1917776117Missense_MutationNAL380I0.94
LIHCchr1917772695SilentnovelL248L0.35
LIHCchr19177885293'UTRnovel0.41
LIHCchr1917766713Missense_MutationnovelK80T0.18
LUADchr1917772477SilentNAE205E0.12
LUADchr1917766811Splice_SitenovelX112_splice0.59
LUADchr1917783057Missense_MutationNAP660T0.73
LUADchr1917784926Splice_SiteNAX809_splice0.39
LUADchr1917784804Nonsense_MutationnovelS769*0.17
LUADchr19177551525'UTRnovel0.56
LUADchr1917781238Missense_MutationNAM545I0.08
LUADchr1917783157Missense_MutationNAA693D0.45
LUADchr1917774421Missense_MutationNAA288D0.45
LUADchr1917781718Missense_Mutationrs747334107S612Y0.19
LUADchr1917781719SilentnovelS612S0.19
LUADchr1917776040Missense_MutationnovelP354H0.44
LUSCchr1917774426Missense_MutationnovelR290G0.38
LUSCchr1917783085Missense_MutationNAG669E0.15
LUSCchr1917776089SilentnovelA370A0.35
LUSCchr1917770885Missense_MutationNAD195Y0.21
LUSCchr19177884113'UTRnovel0.56
LUSCchr1917776101Frame_Shift_DelnovelA375Qfs*230.37
LUSCchr1917764380Missense_MutationNAT42N0.25
LUSCchr1917775078Missense_MutationnovelG315W0.37
LUSCchr1917775079Missense_MutationnovelG315V0.37
LUSCchr1917762734Intronnovel0.08
LUSCchr1917784783Missense_MutationNAG762A0.06
LUSCchr1917783130Missense_MutationnovelT684I0.26
LUSCchr1917766769Missense_MutationnovelV99F0.25
LUSCchr19177883113'UTRnovel0.24
LUSCchr1917776036Missense_MutationnovelE353K0.26
MESOchr1917781795Missense_Mutationrs746424375A638T0.66
OVchr1917781722SilentnovelR613R0.06
OVchr1917784169SilentnovelA720A0.34
OVchr1917787794SilentnovelE865E0.09
OVchr1917770876Missense_MutationnovelK192E0.06
OVchr1917784217Frame_Shift_DelnovelV737Cfs*620.38
OVchr19177551505'UTRnovel0.13
PAADchr1917762830SilentnovelE32E0.16
PAADchr1917784224Missense_MutationnovelL739M0.25
PRADchr19177551445'UTRnovel0.21
PRADchr1917766716Missense_MutationnovelL81P0.43
PRADchr1917783156Missense_Mutationrs761157532A693T0.33
READchr1917787820Missense_MutationNAS874L0.35
READchr1917770863SilentnovelA187A0.33
SARCchr1917770519Missense_Mutationrs767793852R144H0.29U1snRNP70_N
SARCchr1917766626Intronnovel0.3
SARCchr1917770542Missense_MutationnovelR152W0.14U1snRNP70_N
SARCchr1917776021Missense_Mutationrs781383645D348N0.12
SKCMchr1917786603Missense_MutationnovelR819K0.3
SKCMchr19177551645'UTRnovel0.36
SKCMchr1917770562SilentNAQ158Q0.45
SKCMchr1917766797Missense_MutationNAK108T0.32U1snRNP70_N
SKCMchr1917784863Nonsense_MutationnovelQ789*0.26
SKCMchr1917781455Missense_Mutationrs768328075R582C0.27
SKCMchr1917781526SilentnovelS605S0.14
SKCMchr1917778855Missense_MutationNAP533L0.35
SKCMchr1917784880SilentNAV794V0.37
SKCMchr1917783028Missense_Mutationrs150758103R650Q0.43
SKCMchr1917784883SilentnovelG795G0.38
SKCMchr1917776138Missense_MutationNAL387F0.07
SKCMchr1917781804Missense_Mutationrs534109677R641C0.36
SKCMchr1917784228Missense_Mutationrs374251080R740Q0.27
SKCMchr1917781727Missense_Mutationrs746345884P615L0.07
SKCMchr1917755170Silentrs148890860S2S0.29
SKCMchr1917764411Silentrs148025294A52A0.16
SKCMchr1917775991Missense_Mutationrs374706299E338K0.15
SKCMchr1917774253Missense_Mutationrs770875917E269K0.26
SKCMchr19177883723'UTRnovel0.25
SKCMchr1917775988Missense_MutationNAA337T0.3
SKCMchr1917766795SilentnovelL107L0.32
SKCMchr1917784194Missense_MutationnovelP729S0.7
SKCMchr1917784195Missense_MutationnovelP729L0.7
SKCMchr1917774436Missense_MutationnovelG293E0.25
SKCMchr1917770498Missense_MutationNAS137F0.38U1snRNP70_N
SKCMchr1917781726Missense_MutationNAP615S0.5
SKCMchr1917781533Missense_MutationNAG608R0.4
SKCMchr1917764384SilentnovelI43I0.38
SKCMchr1917766766Missense_MutationnovelD98N0.23
SKCMchr1917764398Missense_MutationnovelS48L0.24
SKCMchr1917774455SilentnovelR299R0.45
STADchr1917774427Missense_Mutationrs141405200R290H0.38
STADchr1917772688Missense_MutationNAE246G0.11
STADchr1917772524Missense_Mutationrs531090742S221L0.15
STADchr1917770571Missense_MutationnovelM161I0.15U1snRNP70_N
STADchr1917783083Silentrs767033905S668S0.1
STADchr1917772541Missense_MutationnovelV227M0.35
STADchr1917783083Silentrs767033905S668S0.34
STADchr1917784189Missense_MutationnovelQ727R0.3
STADchr1917772537SilentNAT225T0.49
STADchr1917783084Missense_Mutationrs750801082G669R0.1
STADchr1917775982Splice_Siters772008992X335_splice0.37
STADchr1917776670Frame_Shift_InsnovelR417Qfs*290.29
STADchr1917775982Splice_Siters772008992X335_splice0.23
STADchr1917766811Splice_SitenovelX112_splice0.33
STADchr1917774394Missense_MutationNAA279V0.22
STADchr1917776099Missense_Mutationrs148410831E374K0.26
UCECchr1917776050Missense_MutationNAF357L0.36
UCECchr1917787722SilentNAG841G0.38
UCECchr1917774266Missense_Mutationrs374509300A273V0.07
UCECchr1917772536Missense_Mutationrs528053341T225M0.4
UCECchr1917772672Missense_Mutationrs201978611E241K0.29
UCECchr1917781516Missense_MutationnovelS602N0.12
UCECchr1917784163Silentrs759256252T718T0.2
UCECchr1917778150SilentnovelL425L0.36
UCECchr1917784228Missense_Mutationrs374251080R740Q0.48
UCECchr1917764404Missense_MutationNAA50V0.38
UCECchr1917772458Missense_Mutationrs767365658R199H0.37
UCECchr1917781265Missense_MutationnovelR554S0.1
UCECchr1917784107Missense_MutationNAP700S0.29
UCECchr1917787728SilentnovelS843S0.2
UCECchr1917774252Silentrs144767216F268F0.13
UCECchr1917774453Missense_MutationNAR299W0.33
UCECchr1917776089SilentNAA370A0.26
UCECchr19177551315'UTRnovel0.44
UCECchr1917775062Missense_MutationNAF309L0.21
UCECchr1917774419Missense_MutationNAK287N0.26
UCECchr1917770828Missense_Mutationrs377605612R176W0.24
UCECchr1917774435Nonsense_MutationnovelG293*0.17
UCECchr1917774408Missense_Mutationrs142820853R284W0.2
UCECchr1917783159Missense_Mutationrs376539312D694N0.35
UCECchr1917770856Missense_MutationnovelA185V0.34
UCECchr1917784132Missense_MutationnovelK708R0.32
UCECchr1917787762Missense_MutationnovelE855K0.33
UCECchr1917770847Missense_MutationnovelY182C0.21
UCECchr1917783073Missense_Mutationrs761547319R665H0.43
UCECchr1917787820Missense_MutationNAS874L0.18
UCECchr1917770445SilentnovelS119S0.46
UCECchr1917776030Missense_Mutationrs780189734D351N0.3
UCECchr1917776043Missense_Mutationrs199761608R355H0.41
UCECchr1917762700Intronnovel0.22
UCECchr1917783073Missense_Mutationrs761547319R665H0.46
UCECchr1917775455Splice_SitenovelX316_splice0.45
UCECchr1917776050Missense_MutationNAF357L0.35
UCECchr1917781748Missense_MutationnovelS622F0.45
UCECchr1917772653SilentnovelE234E0.39
UCECchr1917762724Intronnovel0.27
UCECchr1917778176Missense_MutationnovelK433N0.58
UCECchr1917764384SilentnovelI43I0.6
UCECchr1917783159Missense_Mutationrs376539312D694N0.37
UCECchr1917762822Missense_MutationnovelT30A0.18
UCECchr19177551305'UTRrs3746966120.28
UCECchr1917776067Missense_MutationNAP363H0.58
UCECchr1917774425SilentnovelF289F0.33
UCECchr1917772479Missense_MutationnovelT206I0.11
UCECchr1917762792Missense_MutationNAY20D0.31
UCECchr1917770828Missense_Mutationrs377605612R176W0.32
UCECchr1917776029SilentnovelD350D0.28
UCECchr1917778144Nonsense_MutationnovelE423*0.25
UCECchr1917783084Missense_Mutationrs750801082G669R0.83
UCECchr1917784194Missense_MutationnovelP729S0.42
UCECchr1917772683Silentrs768979141S244S0.23
UCECchr1917774266Missense_Mutationrs374509300A273V0.39
UCSchr1917788273Intronnovel0.52

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
READDEL0.08480.23023
THCADEL0.0120.090402
THYMDEL0.02440.10691

Survival Analysis
CancerP-value Q-value
THYM0.023

Kaplan-Meier Survival Analysis

KIRC0.0001

Kaplan-Meier Survival Analysis

STAD0.0053

Kaplan-Meier Survival Analysis

ACC0.05

Kaplan-Meier Survival Analysis

SKCM0.00017

Kaplan-Meier Survival Analysis

PRAD0.018

Kaplan-Meier Survival Analysis

COAD0.019

Kaplan-Meier Survival Analysis

PCPG0.039

Kaplan-Meier Survival Analysis

READ0.00012

Kaplan-Meier Survival Analysis

KICH0.044

Kaplan-Meier Survival Analysis

UCEC0.0052

Kaplan-Meier Survival Analysis

LIHC0.034

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000130475 (Gene tree)
Gene ID
23149
Gene Symbol
FCHO1
Alias
KIAA0290
Full Name
FCH domain only 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
40,851 bases
Position
chr19:17,747,718-17,788,568
Accession
29002
RBP type
canonical RBP
Summary
FCHO1 (FCH Domain Only 1) is a Protein Coding gene. Among its related pathways are Clathrin-mediated endocytosis and Vesicle-mediated transport. Gene Ontology (GO) annotations related to this gene include AP-2 adaptor complex binding. An important paralog of this gene is FCHO2.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000473173U1snRNP70_NPF12220.80.0002211
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000602111FCHO1-236781--- (aa)--
ENST00000600058FCHO1-230910--- (aa)--
ENST00000596536FCHO1-2163204XM_006722701ENSP00000470731889 (aa)XP_006722764O14526
ENST00000598932FCHO1-226575-ENSP00000471563101 (aa)-M0R107
ENST00000595549FCHO1-209774-ENSP00000470578235 (aa)-M0QZI9
ENST00000600209FCHO1-232881-ENSP00000469075175 (aa)-M0QXD1
ENST00000599236FCHO1-228586--- (aa)--
ENST00000593385FCHO1-202573-ENSP000004710032 (aa)-UPI000005E811
ENST00000600201FCHO1-231694--- (aa)--
ENST00000596951FCHO1-2182979-ENSP00000472417889 (aa)-O14526
ENST00000595023FCHO1-2071131-ENSP00000471935264 (aa)-M0R1K4
ENST00000593870FCHO1-204567-ENSP0000047006835 (aa)-M0QYT8
ENST00000594068FCHO1-205841-ENSP00000469511155 (aa)-M0QY09
ENST00000599766FCHO1-229747--- (aa)--
ENST00000597512FCHO1-2212934-ENSP00000470568896 (aa)-M0QZI3
ENST00000595749FCHO1-211562--- (aa)--
ENST00000597474FCHO1-220556-ENSP00000470730125 (aa)-M0QZS1
ENST00000598960FCHO1-227534-ENSP0000046996723 (aa)-M0QYN8
ENST00000597076FCHO1-219501--- (aa)--
ENST00000596507FCHO1-2141014-ENSP00000473169218 (aa)-M0R3E5
ENST00000594202FCHO1-2063214-ENSP00000473001891 (aa)-A0A0C3SFZ9
ENST00000596522FCHO1-215533--- (aa)--
ENST00000598086FCHO1-224554-ENSP00000469425111 (aa)-M0QXW2
ENST00000598539FCHO1-225551-ENSP0000046971142 (aa)-M0QYA9
ENST00000596309FCHO1-212598-ENSP0000047051192 (aa)-M0QZF0
ENST00000597718FCHO1-222884-ENSP00000473173185 (aa)-M0R3E7
ENST00000596462FCHO1-213565-ENSP0000047145015 (aa)-M0R0U5
ENST00000595594FCHO1-210898--- (aa)--
ENST00000593833FCHO1-203580-ENSP00000470495134 (aa)-M0QZE1
ENST00000601247FCHO1-235458--- (aa)--
ENST00000596865FCHO1-217579-ENSP0000047262397 (aa)-M0R2J7
ENST00000595033FCHO1-2082907XM_005259831ENSP00000472668839 (aa)XP_005259888O14526
ENST00000252771FCHO1-2013118-ENSP00000252771889 (aa)-O14526
ENST00000598067FCHO1-223543-ENSP0000046945828 (aa)-M0QXY1
ENST00000600676FCHO1-2343094XM_011527824ENSP00000470493889 (aa)XP_011526126O14526
ENST00000600393FCHO1-233597--- (aa)--
Gene Model
Click here to download ENSG00000130475's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000130475Blood Pressure1.5640000E-005-
ENSG00000130475Platelet Function Tests3.9500000E-006-
ENSG00000130475Neoplasms1E-1323300138
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000130475rs121511131917748561THighest math class taken (MTAG)30038396[0.0058-0.0124] unit increase0.0091EFO_0004875
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000130475's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005515protein binding19713939.25416956.IPIFunction
GO:0005543phospholipid binding21873635.IBAFunction
GO:0005654nucleoplasm-IDAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005829cytosol-IDAComponent
GO:0005829cytosol-TASComponent
GO:0005856cytoskeleton21873635.IBAComponent
GO:0005886plasma membrane21873635.IBAComponent
GO:0005886plasma membrane20448150.IDAComponent
GO:0005905clathrin-coated pit21873635.IBAComponent
GO:0005905clathrin-coated pit20448150.22484487.IDAComponent
GO:0008017microtubule binding21873635.IBAFunction
GO:0008092cytoskeletal protein binding21873635.IBAFunction
GO:0015631tubulin binding21873635.IBAFunction
GO:0030122AP-2 adaptor complex21873635.IBAComponent
GO:0030136clathrin-coated vesicle21873635.IBAComponent
GO:0030136clathrin-coated vesicle20448150.IDAComponent
GO:0035612AP-2 adaptor complex binding22484487.IDAFunction
GO:0048268clathrin coat assembly21873635.IBAProcess
GO:0048268clathrin coat assembly20448150.IMPProcess
GO:0061024membrane organization-TASProcess
GO:0072583clathrin-dependent endocytosis21873635.IBAProcess
GO:0072583clathrin-dependent endocytosis20448150.IMPProcess
GO:0097320plasma membrane tubulation21873635.IBAProcess
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