EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
27693040miR-634 exhibits anti-tumor activities toward hepatocellular carcinoma via Rab1A and DHX33.Mol Oncol2016 DecZhang CZdoi: 10.1016/j.molonc.2016.09.001
25446900Rab1A is an mTORC1 activator and a colorectal oncogene.Cancer Cell2014 Nov 10Thomas JDdoi: 10.1016/j.ccell.2014.09.008
28184936Inhibition of RAB1A suppresses epithelial-mesenchymal transition and proliferation of triple-negative breast cancer cells.Oncol Rep2017 MarXu Hdoi: 10.3892/or.2017.5404
27902464Expression of Rab1A is upregulated in human lung cancer and associated with tumor size and T stage.Aging (Albany NY)2016 Nov 29Wang Xdoi: 10.18632/aging.101087.

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr265104794Missense_MutationnovelF12L0.17
BRCAchr265088598Missense_MutationNAE171D0.2
BRCAchr265088561Missense_MutationNAG184C0.19
BRCAchr2650883623'UTRnovel0.24
COADchr265091065Missense_MutationnovelG69D0.22MMR_HSR1
COADchr265088580SilentNAG177G0.31
COADchr265089006Missense_MutationNAN118S0.23
COADchr2651299305'UTRnovel0.5
COADchr2651299405'UTRrs7496977570.15
COADchr265089066In_Frame_InsnovelS98delinsFNT0.07MMR_HSR1
COADchr265089068Splice_RegionnovelE97E0.05
COADchr265088635Missense_MutationNAT159M0.26
ESCAchr2650872543'UTRnovel0.41
HNSCchr265088666Missense_MutationNAP149S0.54
HNSCchr265091008Missense_MutationnovelI88T0.16MMR_HSR1
KIRCchr265089069Missense_MutationNAE97G0.19MMR_HSR1
KIRCchr265088974Missense_MutationNAT129A0.2
LIHCchr265104748Missense_MutationNAL28I0.25MMR_HSR1
LIHCchr2651299165'UTRnovel0.34
LUSCchr265088942Silentrs773092152A139A0.11
SKCMchr265089066Missense_MutationNAS98F0.36MMR_HSR1
STADchr2651299305'UTRnovel0.21
TGCTchr2650883313'UTRnovel0.19
UCECchr265091050Missense_MutationNAR74Q0.13MMR_HSR1
UCECchr2650883313'UTRnovel0.4
UCECchr265091051Nonsense_MutationNAR74*0.4MMR_HSR1
UCECchr2650876483'UTRnovel0.37
UCECchr265091051Nonsense_MutationNAR74*0.22MMR_HSR1
UCECchr265088942Silentrs773092152A139A0.43
UCECchr265088686Missense_MutationnovelF142S0.6
UCECchr2650879133'UTRnovel0.44
UCECchr2650880413'UTRnovel0.23
UCECchr2650883313'UTRnovel0.22
UCECchr2650873813'UTRnovel0.18
UCECchr2650871763'UTRnovel0.73
UCECchr2650883313'UTRnovel0.35
UCECchr2650872523'UTRnovel0.14
UCECchr2650883313'UTRnovel0.4
UCECchr2650877303'UTRrs76006160.59
UCECchr265091051Nonsense_MutationNAR74*0.05MMR_HSR1
UCECchr2650883313'UTRnovel0.39
UCECchr265088675Frame_Shift_DelNAG147Efs*150.13
UCECchr265129902Missense_MutationNAN5T0.42
UCECchr265088634Silentrs537032834T159T0.36
UCECchr265088533Missense_MutationnovelQ193R0.4
UCECchr2650884813'UTRnovel0.21
UCECchr2650883313'UTRnovel0.42
UCECchr2650883313'UTRnovel0.47
UCECchr2650876493'UTRnovel0.23
UCECchr2650879953'UTRnovel0.33

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
KIRPDEL0.02430.08832
PAADDEL0.04890.2014
READDEL0.06670.19022

Survival Analysis
CancerP-value Q-value
THYM0.043

Kaplan-Meier Survival Analysis

ACC0.037

Kaplan-Meier Survival Analysis

HNSC0.012

Kaplan-Meier Survival Analysis

SKCM0.0078

Kaplan-Meier Survival Analysis

BRCA0.0011

Kaplan-Meier Survival Analysis

ESCA0.001

Kaplan-Meier Survival Analysis

COAD0.047

Kaplan-Meier Survival Analysis

PAAD0.01

Kaplan-Meier Survival Analysis

PCPG0.046

Kaplan-Meier Survival Analysis

CESC0.0024

Kaplan-Meier Survival Analysis

GBM0.021

Kaplan-Meier Survival Analysis

LIHC0.0024

Kaplan-Meier Survival Analysis

LGG0.045

Kaplan-Meier Survival Analysis

LUAD0.028

Kaplan-Meier Survival Analysis

UVM0.0074

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000138069 (Gene tree)
Gene ID
5861
Gene Symbol
RAB1A
Alias
YPT1|RAB1
Full Name
RAB1A, member RAS oncogene family
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
59,636 bases
Position
chr2:65,070,696-65,130,331
Accession
9758
RBP type
canonical RBP
Summary
This gene encodes a member of the Ras superfamily of GTPases. Members of the gene family cycle between inactive GDP-bound and active GTP-bound forms. This small GTPase controls vesicle traffic from the endoplasmic reticulum to the Golgi apparatus. Multiple alternatively spliced transcript variants have been identified for this gene which encode different protein isoforms. [provided by RefSeq, Oct 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000387286MMR_HSR1PF01926.235.7e-0511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000494188RAB1A-205771--- (aa)--
ENST00000398529RAB1A-2011198-ENSP00000381540129 (aa)-P62820
ENST00000409751RAB1A-2021333-ENSP00000386672173 (aa)-E7END7
ENST00000409892RAB1A-2042254-ENSP00000386451141 (aa)-P62820
ENST00000649427RAB1A-2061798-ENSP00000497078205 (aa)-Q5U0I6
ENST00000409784RAB1A-2032447XM_005264468ENSP00000387286205 (aa)XP_005264525P62820
Gene Model
Click here to download ENSG00000138069's gene model file
Pathways
Pathway IDPathway NameSource
hsa05134LegionellosisKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000138069Platelet Function Tests1.3700800E-005-
ENSG00000138069Platelet Function Tests4.3874947E-008-
ENSG00000138069Platelet Function Tests4.5573158E-008-
ENSG00000138069Alzheimer Disease8E-726830138
ENSG00000138069Age of Onset8E-726830138
ENSG00000138069Bronchodilator Agents4E-626634245
ENSG00000138069Forced Expiratory Volume4E-626634245
ENSG00000138069Pulmonary Disease, Chronic Obstructive4E-626634245
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000138069's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000138069RAB1A98100.000ENSAPOG00000008143-10095.545Acanthochromis_polyacanthus
ENSG00000138069RAB1A100100.000ENSAMEG00000001127RAB1A100100.000Ailuropoda_melanoleuca
ENSG00000138069RAB1A98100.000ENSAOCG00000020606-10095.545Amphiprion_ocellaris
ENSG00000138069RAB1A98100.000ENSAPEG00000022488-10095.545Amphiprion_percula
ENSG00000138069RAB1A100100.000ENSANAG00000020929RAB1A100100.000Aotus_nancymaae
ENSG00000138069RAB1A98100.000ENSACLG00000003326-10096.040Astatotilapia_calliptera
ENSG00000138069RAB1A98100.000ENSAMXG00000034850-10094.554Astyanax_mexicanus
ENSG00000138069RAB1A100100.000ENSBTAG00000016720RAB1A100100.000Bos_taurus
ENSG00000138069RAB1A100100.000ENSCJAG00000046275RAB1A100100.000Callithrix_jacchus
ENSG00000138069RAB1A100100.000ENSCAFG00000003187RAB1A100100.000Canis_familiaris
ENSG00000138069RAB1A100100.000ENSCAFG00020026971RAB1A100100.000Canis_lupus_dingo
ENSG00000138069RAB1A96100.000ENSCHIG00000014060RAB1A96100.000Capra_hircus
ENSG00000138069RAB1A100100.000ENSTSYG00000005996RAB1A100100.000Carlito_syrichta
ENSG00000138069RAB1A100100.000ENSCPOG00000015437RAB1A100100.000Cavia_porcellus
ENSG00000138069RAB1A100100.000ENSCCAG00000021869RAB1A100100.000Cebus_capucinus
ENSG00000138069RAB1A100100.000ENSCATG00000030853RAB1A100100.000Cercocebus_atys
ENSG00000138069RAB1A100100.000ENSCLAG00000014766RAB1A100100.000Chinchilla_lanigera
ENSG00000138069RAB1A100100.000ENSCPBG00000013243RAB1A10099.512Chrysemys_picta_bellii
ENSG00000138069RAB1A100100.000ENSCANG00000035916RAB1A10097.561Colobus_angolensis_palliatus
ENSG00000138069RAB1A100100.000ENSCGRG00001012691-100100.000Cricetulus_griseus_chok1gshd
ENSG00000138069RAB1A100100.000ENSCGRG00000008456-100100.000Cricetulus_griseus_crigri
ENSG00000138069RAB1A100100.000ENSDNOG00000018236RAB1A100100.000Dasypus_novemcinctus
ENSG00000138069RAB1A100100.000ENSDORG00000028628-100100.000Dipodomys_ordii
ENSG00000138069RAB1A10098.438FBgn0285937Rab110084.466Drosophila_melanogaster
ENSG00000138069RAB1A99100.000ENSETEG00000002205RAB1A100100.000Echinops_telfairi
ENSG00000138069RAB1A100100.000ENSEASG00005007298RAB1A100100.000Equus_asinus_asinus
ENSG00000138069RAB1A100100.000ENSECAG00000009926RAB1A100100.000Equus_caballus
ENSG00000138069RAB1A99100.000ENSEEUG00000011721RAB1A100100.000Erinaceus_europaeus
ENSG00000138069RAB1A98100.000ENSELUG00000012166RAB1A9695.588Esox_lucius
ENSG00000138069RAB1A100100.000ENSFCAG00000002536RAB1A100100.000Felis_catus
ENSG00000138069RAB1A9999.083ENSFALG00000013624RAB1A9997.537Ficedula_albicollis
ENSG00000138069RAB1A100100.000ENSFDAG00000019505-100100.000Fukomys_damarensis
ENSG00000138069RAB1A98100.000ENSFHEG00000014414-10094.554Fundulus_heteroclitus
ENSG00000138069RAB1A100100.000ENSGALG00000031582RAB1A10099.512Gallus_gallus
ENSG00000138069RAB1A98100.000ENSGAFG00000000918-10094.554Gambusia_affinis
ENSG00000138069RAB1A100100.000ENSGAGG00000006802RAB1A10099.512Gopherus_agassizii
ENSG00000138069RAB1A100100.000ENSGGOG00000026603RAB1A100100.000Gorilla_gorilla
ENSG00000138069RAB1A100100.000ENSHGLG00000013585RAB1A100100.000Heterocephalus_glaber_female
ENSG00000138069RAB1A99100.000ENSHGLG00100007994RAB1A9997.549Heterocephalus_glaber_male
ENSG00000138069RAB1A100100.000ENSSTOG00000020693-100100.000Ictidomys_tridecemlineatus
ENSG00000138069RAB1A96100.000ENSJJAG00000014396Rab1a100100.000Jaculus_jaculus
ENSG00000138069RAB1A94100.000ENSKMAG00000014038-9395.431Kryptolebias_marmoratus
ENSG00000138069RAB1A98100.000ENSLBEG00000028426RAB1A10095.050Labrus_bergylta
ENSG00000138069RAB1A10098.537ENSLACG00000012869RAB1A10098.537Latimeria_chalumnae
ENSG00000138069RAB1A100100.000ENSLAFG00000016666RAB1A100100.000Loxodonta_africana
ENSG00000138069RAB1A100100.000ENSMFAG00000046246RAB1A100100.000Macaca_fascicularis
ENSG00000138069RAB1A96100.000ENSMMUG00000021721RAB1A91100.000Macaca_mulatta
ENSG00000138069RAB1A9599.485ENSMNEG00000028414-9799.485Macaca_nemestrina
ENSG00000138069RAB1A100100.000ENSMLEG00000042535RAB1A100100.000Mandrillus_leucophaeus
ENSG00000138069RAB1A98100.000ENSMZEG00005013959-10096.040Maylandia_zebra
ENSG00000138069RAB1A9699.492ENSMGAG00000004611RAB1A9899.492Meleagris_gallopavo
ENSG00000138069RAB1A100100.000ENSMAUG00000012156Rab1a10099.512Mesocricetus_auratus
ENSG00000138069RAB1A100100.000ENSMICG00000012587RAB1A100100.000Microcebus_murinus
ENSG00000138069RAB1A100100.000ENSMOCG00000017022Rab1a10099.512Microtus_ochrogaster
ENSG00000138069RAB1A98100.000ENSMMOG00000018709RAB1A10093.564Mola_mola
ENSG00000138069RAB1A100100.000ENSMODG00000003340RAB1A10099.512Monodelphis_domestica
ENSG00000138069RAB1A100100.000MGP_CAROLIEiJ_G0016115Rab1a100100.000Mus_caroli
ENSG00000138069RAB1A100100.000ENSMUSG00000020149Rab1a100100.000Mus_musculus
ENSG00000138069RAB1A100100.000MGP_PahariEiJ_G0016776Rab1a100100.000Mus_pahari
ENSG00000138069RAB1A100100.000MGP_SPRETEiJ_G0016958Rab1a100100.000Mus_spretus
ENSG00000138069RAB1A100100.000ENSMPUG00000006139RAB1A82100.000Mustela_putorius_furo
ENSG00000138069RAB1A100100.000ENSMLUG00000009489RAB1A100100.000Myotis_lucifugus
ENSG00000138069RAB1A100100.000ENSNGAG00000005838Rab1a100100.000Nannospalax_galili
ENSG00000138069RAB1A98100.000ENSNBRG00000020492-10096.040Neolamprologus_brichardi
ENSG00000138069RAB1A96100.000ENSOPRG00000006595RAB1A100100.000Ochotona_princeps
ENSG00000138069RAB1A94100.000ENSODEG00000011248-96100.000Octodon_degus
ENSG00000138069RAB1A9996.774ENSONIG00000006819-10093.627Oreochromis_niloticus
ENSG00000138069RAB1A100100.000ENSOANG00000012438RAB1A10099.512Ornithorhynchus_anatinus
ENSG00000138069RAB1A100100.000ENSOCUG00000017003RAB1A100100.000Oryctolagus_cuniculus
ENSG00000138069RAB1A100100.000ENSOGAG00000026181RAB1A100100.000Otolemur_garnettii
ENSG00000138069RAB1A96100.000ENSOARG00000019997RAB1A97100.000Ovis_aries
ENSG00000138069RAB1A99100.000ENSPPAG00000030253RAB1A100100.000Pan_paniscus
ENSG00000138069RAB1A100100.000ENSPPRG00000025077RAB1A100100.000Panthera_pardus
ENSG00000138069RAB1A96100.000ENSPTIG00000013471RAB1A97100.000Panthera_tigris_altaica
ENSG00000138069RAB1A100100.000ENSPTRG00000011989RAB1A100100.000Pan_troglodytes
ENSG00000138069RAB1A100100.000ENSPANG00000010485RAB1A100100.000Papio_anubis
ENSG00000138069RAB1A9999.083ENSPSIG00000008028RAB1A9996.552Pelodiscus_sinensis
ENSG00000138069RAB1A9998.413ENSPMGG00000021015-9995.588Periophthalmus_magnuspinnatus
ENSG00000138069RAB1A100100.000ENSPEMG00000009340Rab1a100100.000Peromyscus_maniculatus_bairdii
ENSG00000138069RAB1A100100.000ENSPCIG00000023212RAB1A10099.512Phascolarctos_cinereus
ENSG00000138069RAB1A9996.825ENSPFOG00000000498-9993.137Poecilia_formosa
ENSG00000138069RAB1A98100.000ENSPLAG00000015592-10094.059Poecilia_latipinna
ENSG00000138069RAB1A98100.000ENSPMEG00000005288-10094.059Poecilia_mexicana
ENSG00000138069RAB1A100100.000ENSPPYG00000012360RAB1A100100.000Pongo_abelii
ENSG00000138069RAB1A100100.000ENSPCOG00000017244RAB1A100100.000Propithecus_coquereli
ENSG00000138069RAB1A98100.000ENSPNYG00000015841-10096.040Pundamilia_nyererei
ENSG00000138069RAB1A100100.000ENSRNOG00000004992Rab1a100100.000Rattus_norvegicus
ENSG00000138069RAB1A100100.000ENSSBOG00000023732RAB1A100100.000Saimiri_boliviensis_boliviensis
ENSG00000138069RAB1A9799.083ENSSHAG00000003597RAB1A9898.010Sarcophilus_harrisii
ENSG00000138069RAB1A98100.000ENSSMAG00000021049-10095.545Scophthalmus_maximus
ENSG00000138069RAB1A98100.000ENSSDUG00000022535RAB1A10096.040Seriola_dumerili
ENSG00000138069RAB1A100100.000ENSSPUG00000012822RAB1A10099.512Sphenodon_punctatus
ENSG00000138069RAB1A98100.000ENSSPAG00000012564-10095.545Stegastes_partitus
ENSG00000138069RAB1A100100.000ENSSSCG00000008359RAB1A100100.000Sus_scrofa
ENSG00000138069RAB1A10099.083ENSTGUG00000002328RAB1A10097.073Taeniopygia_guttata
ENSG00000138069RAB1A98100.000ENSTRUG00000024994RAB1A10095.050Takifugu_rubripes
ENSG00000138069RAB1A96100.000ENSUMAG00000021038RAB1A99100.000Ursus_maritimus
ENSG00000138069RAB1A9799.495ENSVPAG00000005640RAB1A9999.495Vicugna_pacos
ENSG00000138069RAB1A100100.000ENSVVUG00000027588RAB1A100100.000Vulpes_vulpes
ENSG00000138069RAB1A98100.000ENSXMAG00000015776-10094.554Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000045autophagosome assembly21873635.IBAProcess
GO:0000045autophagosome assembly22939626.IMPProcess
GO:0000139Golgi membrane21873635.IBAComponent
GO:0000139Golgi membrane-TASComponent
GO:0003924GTPase activity21873635.IBAFunction
GO:0003924GTPase activity17684057.22939626.IDAFunction
GO:0005515protein binding15186776.15796781.16902405.17684057.19942850.25107275.25446900.26496610.27334615.IPIFunction
GO:0005525GTP binding-IEAFunction
GO:0005769early endosome-IEAComponent
GO:0005789endoplasmic reticulum membrane21873635.IBAComponent
GO:0005794Golgi apparatus16791210.HDAComponent
GO:0005829cytosol-TASComponent
GO:0006886intracellular protein transport21873635.IBAProcess
GO:0006888ER to Golgi vesicle-mediated transport21873635.IBAProcess
GO:0006888ER to Golgi vesicle-mediated transport21680502.IGIProcess
GO:0006888ER to Golgi vesicle-mediated transport17684057.21680502.22939626.IMPProcess
GO:0006888ER to Golgi vesicle-mediated transport-TASProcess
GO:0006890retrograde vesicle-mediated transport, Golgi to ER-TASProcess
GO:0006897endocytosis21303926.IMPProcess
GO:0006914autophagy22939626.IMPProcess
GO:0007030Golgi organization17684057.IMPProcess
GO:0016192vesicle-mediated transport2501306.TASProcess
GO:0016477cell migration20639577.IMPProcess
GO:0019068virion assembly21680502.IGIProcess
GO:0019068virion assembly21680502.IMPProcess
GO:0030252growth hormone secretion22939626.IMPProcess
GO:0030658transport vesicle membrane-TASComponent
GO:0032402melanosome transport-IEAProcess
GO:0032482Rab protein signal transduction21873635.IBAProcess
GO:0034446substrate adhesion-dependent cell spreading-IEAProcess
GO:0042470melanosome-IEAComponent
GO:0042742defense response to bacterium22939626.IMPProcess
GO:0043687post-translational protein modification-TASProcess
GO:0045296cadherin binding25468996.HDAFunction
GO:0047496vesicle transport along microtubule21303926.IMPProcess
GO:0048208COPII vesicle coating-TASProcess
GO:0060271cilium assembly17646400.IMPProcess
GO:0070062extracellular exosome20458337.HDAComponent
GO:0072606interleukin-8 secretion22939626.IMPProcess
GO:0090110cargo loading into COPII-coated vesicle17684057.IMPProcess
GO:0090557establishment of endothelial intestinal barrier23885123.IMPProcess
GO:1903020positive regulation of glycoprotein metabolic process21680502.IGIProcess
GO:1904668positive regulation of ubiquitin protein ligase activity-TASProcess
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