EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr7158656355Missense_MutationnovelE765K0.28
BLCAchr7158664600Missense_MutationnovelV544M0.34
BLCAchr7158644373Nonsense_MutationNAS1099*0.12
BLCAchr7158631668Nonstop_Mutationnovel*1144Eext*140.25
BLCAchr7158650874Frame_Shift_DelnovelV1007Sfs*80.38
BLCAchr7158664199SilentNAE600E0.11
BLCAchr71586316163'UTRnovel0.19
BRCAchr7158701897Translation_Start_SitenovelM1?0.19
BRCAchr71586314973'UTRnovel0.07
BRCAchr7158680718Splice_Regionnovel0.43
BRCAchr7158656596Missense_MutationNAE724K0.12
BRCAchr7158655222Missense_MutationNAE848K0.21
BRCAchr7158693448Nonsense_MutationNAS43*0.17
BRCAchr7158664552Missense_MutationNAE560K0.21
CESCchr7158652479Splice_RegionnovelV916V0.08
CESCchr7158683347Missense_Mutationrs747423439G293R0.36
CESCchr7158671601SilentNAL464L0.29
CESCchr7158654725Intronnovel0.22
CESCchr71586314483'UTRnovel0.7
CESCchr7158652294Missense_Mutationrs201551364R978Q0.39
CESCchr7158658401Missense_Mutationrs370630902R666H0.18
CESCchr7158689928Missense_Mutationrs371198970R188H0.43
CESCchr7158686184SilentnovelG275G0.3
COADchr7158675564Silentrs370565592P413P0.44
COADchr7158680742SilentnovelP333P0.06
COADchr7158671578Missense_Mutationrs199662183S472L0.14
COADchr7158692949Missense_MutationnovelS92N0.26
COADchr7158646515Missense_MutationnovelP1042S0.19
COADchr7158680022Missense_MutationnovelD362Y0.07
COADchr7158664558Missense_MutationnovelA558T0.33
COADchr7158664713Missense_Mutationrs753719449R506H0.34
COADchr7158680720Splice_SiteNAX340_splice0.31
COADchr7158652328Missense_Mutationrs377006246R967W0.38
COADchr7158662313Nonsense_MutationnovelE624*0.22
COADchr7158692919Missense_MutationNAV102A0.18
COADchr7158693411Missense_Mutationrs547669473K55N0.2
ESCAchr7158655452Missense_MutationnovelD798Y0.37
ESCAchr7158690693Nonsense_MutationnovelR138*0.35
GBMchr7158671581Missense_MutationnovelN471T0.23
GBMchr7158664630Missense_MutationnovelE534K0.26
GBMchr7158654649Missense_MutationNAD898Y0.14
GBMchr7158654770Intronnovel0.12
GBMchr7158656325Missense_MutationnovelE775K0.2
GBMchr7158675595Missense_MutationnovelI403T0.09
GBMchr7158689869Missense_MutationnovelD208Y0.31
GBMchr7158690722Missense_MutationnovelG128V0.06
GBMchr7158655168Missense_MutationnovelE866K0.37
GBMchr7158680783Missense_Mutationrs201348020R320W0.21
HNSCchr7158679968Missense_MutationnovelE380K0.11
HNSCchr7158683350Missense_MutationnovelH292Y0.13
HNSCchr7158656558SilentnovelQ736Q0.11
HNSCchr7158662208SilentnovelL659L0.25
KIRCchr7158654619SilentNAR908R0.23
KIRCchr7158679997Missense_MutationNAM370R0.39
KIRCchr7158654629Silentrs752571821Q904Q0.19
KIRCchr7158664747Frame_Shift_DelnovelW495Gfs*250.14
KIRCchr7158654746Intronnovel0.26
KIRCchr7158690663Missense_MutationNAC148S0.06
KIRCchr7158656560Frame_Shift_InsnovelQ736Tfs*120.06
LAMLchr7158631676Frame_Shift_DelnovelL1141*0.22
LAMLchr7158664186Frame_Shift_DelnovelT605Lfs*90.05
LGGchr7158654737Intronnovel0.06
LGGchr7158650966Missense_MutationnovelY981H0.06
LIHCchr7158644365Missense_MutationNAR1102G0.23
LIHCchr7158656357Missense_MutationnovelI764T0.26
LIHCchr71586316563'UTRnovel0.06
LUADchr7158646523Missense_MutationnovelS1039F0.05
LUADchr7158675647Nonsense_MutationNAE386*0.23
LUADchr7158689954Splice_SitenovelX180_splice0.22
LUADchr71586316603'UTRrs7557255410.19
LUADchr7158652292Splice_SitenovelX978_splice0.16
LUADchr7158652294Missense_MutationnovelR978L0.16
LUADchr7158655417Missense_MutationnovelK809N0.27
LUADchr71586315203'UTRnovel0.21
LUADchr7158658338Missense_MutationnovelS687I0.13
LUADchr7158664237Missense_MutationnovelE588Q0.18
LUADchr7158656329SilentnovelN773N0.21
LUADchr7158662328Missense_MutationNAM619V0.12
LUADchr7158690670SilentNAQ145Q0.17
LUADchr7158675633SilentNAP390P0.15
LUADchr7158656362SilentNAV762V0.12
LUADchr7158654673Missense_MutationNAD890H0.15
LUADchr7158675616Missense_MutationnovelG396V0.21
LUSCchr7158656417Missense_MutationNAK744I0.17
LUSCchr7158654789Intronnovel0.33
LUSCchr7158645562SilentNAV1079V0.3
LUSCchr7158671547Missense_MutationNAM482I0.19
LUSCchr7158664595Missense_MutationnovelQ545H0.32
LUSCchr7158662348Missense_MutationNAS612L0.12
LUSCchr7158687403In_Frame_DelnovelI237del0.23
LUSCchr7158652482Splice_SitenovelX916_splice0.12
LUSCchr7158701883Missense_MutationnovelT6K0.27
LUSCchr7158664683Missense_Mutationrs774500092R516Q0.07
LUSCchr7158664574Missense_MutationnovelR552S0.23
LUSCchr7158662292Missense_MutationnovelK631E0.35
LUSCchr7158671562SilentNAV477V0.23
LUSCchr7158656358Missense_MutationnovelI764V0.14
LUSCchr7158692956Nonsense_MutationnovelR90*0.17
LUSCchr7158690617Missense_MutationnovelG163V0.24
LUSCchr7158652403Missense_MutationNAD942Y0.07
OVchr7158650879Missense_MutationnovelT1010P0.1
OVchr7158680040Frame_Shift_InsnovelE356Kfs*400.05
OVchr7158654779Intronnovel0.11
OVchr7158680043Missense_MutationNAV355I0.61
OVchr7158656572Frame_Shift_InsnovelT732Lfs*380.24
OVchr7158652309Frame_Shift_InsnovelP973Qfs*260.03
OVchr7158683357SilentNAF289F0.27
OVchr7158650893Frame_Shift_DelnovelH1004Rfs*70.31
PAADchr71586315193'UTRnovel0.15
PAADchr7158655360Silentrs781659252L828L0.16
PAADchr7158664631Missense_MutationnovelE533D0.16
PAADchr7158680783Missense_Mutationrs201348020R320W0.07
PRADchr7158650924Nonsense_MutationNAQ995*0.11
PRADchr7158658407Missense_MutationNAD664V0.31
READchr71586314973'UTRnovel0.08
READchr7158689824Nonsense_MutationNAE223*0.41
SARCchr7158693477Silentrs765968854F33F0.21
SARCchr7158683334Missense_MutationnovelP297L0.23
SKCMchr7158631718Splice_SitenovelX1127_splice0.25
SKCMchr7158683365Nonsense_MutationnovelQ287*0.4
SKCMchr7158655413Missense_Mutationrs369184720R811C0.25
SKCMchr7158675641Missense_MutationnovelP388S0.3
SKCMchr7158680067Nonsense_MutationNAR347*0.13
SKCMchr7158664273Missense_MutationNAH576Y0.92
SKCMchr71586315563'UTRnovel0.22
SKCMchr7158646534SilentnovelP1035P0.35
SKCMchr7158664656Missense_MutationNAS525F0.05
SKCMchr7158650911Missense_MutationnovelT999I0.49
SKCMchr7158650912Missense_MutationnovelT999S0.49
SKCMchr7158679987Missense_MutationnovelE373D0.45
SKCMchr7158646540SilentNAT1033T0.13
SKCMchr7158654741Intronnovel0.27
SKCMchr7158656307Missense_MutationnovelP781S0.23
SKCMchr7158664230Missense_MutationNAP590L0.47
SKCMchr7158701853Missense_MutationNAV16A0.08
SKCMchr7158664276Missense_Mutationrs373939140R575C0.45
SKCMchr7158693473SilentNAL35L0.2
SKCMchr7158680789Missense_MutationNAK318E0.31
SKCMchr7158662247Missense_MutationnovelY646H0.44
STADchr7158656286Missense_MutationnovelL788F0.14
STADchr7158693415Missense_MutationNAL54P0.05
STADchr7158680006Missense_MutationNAA367V0.31
STADchr7158652294Missense_Mutationrs201551364R978Q0.1
STADchr7158690662Missense_MutationNAC148Y0.19
STADchr7158644325Missense_MutationNAF1115C0.29
STADchr7158664274SilentNAR575R0.29
STADchr7158655212Missense_MutationnovelG851D0.37
STADchr7158655123Missense_MutationNAI881V0.07
STADchr7158652466Frame_Shift_DelNAY921Mfs*90.16
STADchr7158687383Silentrs372309426H244H0.19
STADchr7158683348SilentNAH292H0.07
STADchr7158650915Missense_MutationNAH998Y0.16
STADchr7158654618Missense_Mutationrs186888334R908Q0.21
STADchr7158655420Silentrs527387542G808G0.42
STADchr7158654769Intronnovel0.17
STADchr7158679974Missense_MutationNAF378L0.18
THCAchr7158686219Missense_MutationNAE264Q0.35
UCECchr71586314713'UTRrs5337399910.56
UCECchr7158693411SilentNAK55K0.33
UCECchr7158664543Missense_MutationnovelA563S0.42
UCECchr7158645598Missense_MutationnovelK1067N0.18
UCECchr7158664264Missense_MutationnovelN579H0.36
UCECchr7158664656Missense_MutationnovelS525Y0.23
UCECchr7158680745Missense_MutationnovelK332N0.39
UCECchr7158690637SilentnovelL156L0.39
UCECchr7158664552Missense_MutationNAE560K0.49
UCECchr7158693431Nonsense_MutationnovelE49*0.42
UCECchr7158693368Missense_MutationnovelW70R0.19
UCECchr7158656325Missense_MutationnovelE775K0.29
UCECchr7158693411Missense_Mutationrs547669473K55N0.24
UCECchr71586314823'UTRnovel0.24
UCECchr7158693470Missense_MutationNAN36H0.13
UCECchr7158652295Missense_MutationnovelR978W0.58
UCECchr7158689951Splice_RegionNAG180G0.48
UCECchr71586315193'UTRnovel0.22
UCECchr7158675510Silentrs377533159T431T0.46
UCECchr7158652416Missense_MutationnovelL937F0.43
UCECchr7158683374Missense_MutationnovelD284Y0.32
UCECchr7158662340Missense_Mutationrs755516454D615N0.47
UCECchr7158680790Missense_MutationnovelK317N0.31
UCECchr71586316263'UTRnovel0.27
UCECchr7158656304Missense_Mutationrs201255175R782W0.3
UCECchr7158690693Nonsense_MutationnovelR138*0.34
UCECchr7158644379Missense_Mutationrs186267236K1097T0.33
UCECchr7158658359Missense_MutationNAA680D0.38
UCECchr7158693330Missense_Mutationrs778406650E82D0.57
UCECchr7158652384Missense_MutationnovelA948V0.57
UCECchr7158671577Silentrs144031410S472S0.27
UCECchr71586315873'UTRnovel0.36
UCECchr7158664620Missense_MutationNAC537Y0.09
UCECchr7158693438Missense_MutationnovelQ46H0.19
UCECchr7158664552Missense_MutationNAE560K0.4
UCECchr7158687435Missense_MutationnovelR227K0.29
UCECchr7158656404Missense_MutationnovelQ748H0.14
UCECchr7158675657Splice_SiteNAX383_splice0.43
UCECchr7158683348SilentNAH292H0.34
UCECchr7158680782Missense_Mutationrs756707913R320Q0.55
UCECchr7158650953Missense_MutationNAR985M0.2
UCECchr7158679967Missense_MutationnovelE380A0.14
UCECchr7158664680Missense_MutationNAR517H0.36
UCECchr7158689945Silentrs781578992D182D0.36
UCECchr7158650837Missense_Mutationrs373650801R1024W0.37
UCECchr7158671586Silentrs772140188H469H0.54
UCECchr7158652466Frame_Shift_DelNAY921Mfs*90.38
UCECchr7158679981Missense_MutationNAQ375H0.43
UCECchr7158645564Missense_MutationnovelV1079M0.35
UCECchr7158655440Missense_MutationNAL802I0.5
UCECchr7158644360SilentNAE1103E0.26
UCECchr71586315153'UTRnovel0.11
UCECchr7158689878Nonsense_MutationnovelE205*0.48
UCECchr7158690720In_Frame_InsnovelG128_I129insLREIVSP0.08
UCECchr7158644303Missense_MutationnovelE1122D0.22
UCECchr7158650915Missense_MutationNAH998Y0.23
UCECchr7158652339Missense_MutationnovelE963A0.38
UCECchr7158680738Missense_MutationnovelL335I0.29
UCECchr7158671655Missense_MutationnovelM446I0.39
UCECchr7158692843Splice_Regionrs766552957N127N0.38
UCECchr7158644377Missense_MutationnovelS1098G0.04
UCECchr7158664275Missense_MutationnovelR575H0.06
UCECchr7158675657Splice_SiteNAX383_splice0.12
UCECchr7158664641Missense_MutationnovelN530T0.38
UCECchr7158689825Missense_MutationnovelK222N0.28
UCECchr7158692875Missense_MutationnovelE117K0.33
UCSchr7158675492SilentnovelR437R0.35

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCDEL0.10.12261
BLCADEL0.11760.062073
CESCDEL0.17630.0016147
DLBCDEL0.08330.03486
KIRCAMP0.29170.075418
LAMLDEL0.13093.4101e-05
LGGAMP0.29821.5525e-07
LIHCDEL0.08110.24831
LUSCDEL0.15973.2062e-06
OVAMP0.49221.5763e-13
PAADDEL0.06520.049388
SARCDEL0.24122.9687e-06
TGCTDEL0.07330.11738
THCADEL00.27619
UCECDEL0.09650.0001859
UCSDEL0.33930.10142

Survival Analysis
CancerP-value Q-value
THYM0.0025

Kaplan-Meier Survival Analysis

STAD0.017

Kaplan-Meier Survival Analysis

MESO0.00012

Kaplan-Meier Survival Analysis

ACC0.0001

Kaplan-Meier Survival Analysis

HNSC0.0082

Kaplan-Meier Survival Analysis

SKCM0.00025

Kaplan-Meier Survival Analysis

KIRP0.00011

Kaplan-Meier Survival Analysis

PAAD0.0022

Kaplan-Meier Survival Analysis

READ0.049

Kaplan-Meier Survival Analysis

KICH0.00012

Kaplan-Meier Survival Analysis

UCEC0.0027

Kaplan-Meier Survival Analysis

LIHC0.00018

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

LUAD0.00015

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000146918 (Gene tree)
Gene ID
54892
Gene Symbol
NCAPG2
Alias
FLJ20311|MTB|CAP-G2|hCAP-G2|LUZP5
Full Name
non-SMC condensin II complex subunit G2
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
73,663 bases
Position
chr7:158,631,169-158,704,831
Accession
21904
RBP type
non-canonical RBP
Summary
This gene encodes a protein that belongs to the Condensin2nSMC family of proteins. The encoded protein is a regulatory subunit of the condensin II complex which, along with the condensin I complex, plays a role in chromosome assembly and segregation during mitosis. A similar protein in mouse is required for early development of the embryo. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Aug 2013]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000409423NCAPG2-2033957-ENSP000003865691143 (aa)-Q86XI2
ENST00000472591NCAPG2-207554--- (aa)--
ENST00000432615NCAPG2-2044134-ENSP00000414337389 (aa)-F8WE06
ENST00000474940NCAPG2-208583--- (aa)--
ENST00000475918NCAPG2-209557--- (aa)--
ENST00000491792NCAPG2-210581--- (aa)--
ENST00000409339NCAPG2-2025253XM_011516356ENSP000003870071156 (aa)XP_011514658Q86XI2
ENST00000467785NCAPG2-2063276--- (aa)--
ENST00000441982NCAPG2-2052926XM_011516362ENSP00000408080898 (aa)XP_011514664H0Y6U5
ENST00000621338NCAPG2-211597--- (aa)--
ENST00000356309NCAPG2-2013930XM_005249547ENSP000003486571143 (aa)XP_005249604Q86XI2
Gene Model
Click here to download ENSG00000146918's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000146918's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000796condensin complex-IEAComponent
GO:0001833inner cell mass cell proliferation-IEAProcess
GO:0005515protein binding17268547.IPIFunction
GO:0005654nucleoplasm-TASComponent
GO:0006366transcription by RNA polymerase II-IEAProcess
GO:0007049cell cycle-IEAProcess
GO:0016020membrane19946888.HDAComponent
GO:0016607nuclear speck-IDAComponent
GO:0030218erythrocyte differentiation-IEAProcess
GO:0030261chromosome condensation-IEAProcess
GO:0035064methylated histone binding20622854.IDAFunction
GO:0043425bHLH transcription factor binding-IEAFunction
GO:0045647negative regulation of erythrocyte differentiation-IEAProcess
GO:0051301cell division-IEAProcess
GO:0061098positive regulation of protein tyrosine kinase activity-IEAProcess
GO:0098772molecular function regulator-IEAFunction
GO:2000273positive regulation of signaling receptor activity-IEAProcess
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